Wall clock time and date at job start Tue Mar 31 2020 22:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86808 * 119.99908 * 2 1 4 4 H 1.48499 * 109.47011 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47152 * 300.00204 * 3 2 1 6 6 H 1.48494 * 109.46938 * 60.00422 * 3 2 1 7 7 C 1.37878 * 120.00226 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00012 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99812 * 359.97438 * 7 2 1 10 10 N 1.46501 * 109.47186 * 180.02562 * 9 7 2 11 11 C 1.34987 * 125.97342 * 124.97677 * 10 9 7 12 12 C 1.35215 * 107.87152 * 179.76256 * 11 10 9 13 13 C 1.40453 * 107.87173 * 0.36819 * 12 11 10 14 14 N 1.39957 * 125.98533 * 179.88794 * 13 12 11 15 15 C 1.34777 * 119.99678 * 359.43786 * 14 13 12 16 16 O 1.21433 * 120.00318 * 0.27925 * 15 14 13 17 17 C 1.48988 * 119.99989 * 180.27474 * 15 14 13 18 18 O 1.21653 * 120.00023 * 0.02562 * 17 15 14 19 19 C 1.41297 * 119.99834 * 180.02562 * 17 15 14 20 20 C 1.37612 * 125.47475 * 179.71963 * 19 17 15 21 21 C 1.36875 * 113.24362 * 179.83406 * 20 19 17 22 22 C 1.34519 * 115.13220 * 0.45759 * 21 20 19 23 23 Cl 1.73591 * 124.50327 * 179.76435 * 22 21 20 24 24 S 1.70609 * 110.99056 * 359.74279 * 22 21 20 25 25 N 1.31275 * 108.03674 * 359.62558 * 13 12 11 26 26 H 0.96992 * 120.00026 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.47362 * 59.99731 * 9 7 2 28 28 H 1.09002 * 109.47199 * 299.99674 * 9 7 2 29 29 H 1.07994 * 126.06217 * 359.97438 * 11 10 9 30 30 H 1.08005 * 126.06660 * 180.21460 * 12 11 10 31 31 H 0.97001 * 120.00535 * 179.72034 * 14 13 12 32 32 H 1.08003 * 123.37649 * 0.02562 * 20 19 17 33 33 H 1.08002 * 122.43387 * 180.21589 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3465 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 2.2424 -4.6223 0.8946 12 6 3.2573 -5.4455 0.5473 13 6 3.8688 -4.9153 -0.6006 14 7 4.9624 -5.4659 -1.2786 15 6 5.5302 -6.6030 -0.8301 16 8 5.0899 -7.1525 0.1592 17 6 6.6982 -7.1860 -1.5482 18 8 7.1397 -6.6354 -2.5391 19 6 7.2931 -8.3784 -1.0784 20 6 8.3680 -9.0156 -1.6548 21 6 8.7424 -10.1520 -0.9900 22 6 8.0004 -10.4521 0.0911 23 17 8.2567 -11.8368 1.1061 24 16 6.7743 -9.2905 0.3325 25 7 3.2316 -3.8157 -0.9295 26 1 -0.4850 0.8400 0.0004 27 1 0.6241 -2.5567 -0.8902 28 1 0.6248 -2.5571 0.8897 29 1 1.5786 -4.7516 1.7366 30 1 3.5479 -6.3491 1.0627 31 1 5.3143 -5.0271 -2.0688 32 1 8.8681 -8.6535 -2.5410 33 1 9.5708 -10.7654 -1.3125 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000428734228.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:09 Heat of formation + Delta-G solvation = 54.910546 kcal Electronic energy + Delta-G solvation = -22660.576269 eV Core-core repulsion = 18842.010336 eV Total energy + Delta-G solvation = -3818.565934 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 339.023 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.21334 -40.29799 -38.88102 -38.01404 -36.95186 -35.11282 -33.42537 -31.11119 -30.65112 -29.47908 -27.36382 -26.39914 -24.51133 -22.96668 -21.83860 -20.58248 -19.87483 -19.81080 -18.54644 -17.32834 -16.83672 -16.65140 -16.24502 -16.12857 -15.71097 -15.07981 -14.66423 -14.59055 -14.26494 -14.03220 -13.82835 -13.64234 -13.06033 -13.03546 -12.47913 -12.35389 -12.08887 -11.96688 -11.84481 -11.59681 -11.11820 -11.02194 -10.89985 -10.61630 -10.31411 -10.10994 -9.68103 -9.56958 -9.20218 -9.06742 -8.68422 -8.29797 -7.64943 -6.29170 -4.34419 -0.49587 0.64048 1.00601 1.37703 1.69374 1.96335 2.27283 2.59693 2.91363 3.20035 3.27860 3.33454 3.46443 3.57299 4.10785 4.29513 4.49162 4.60912 4.79387 5.06313 5.28590 5.36259 5.48825 5.63522 5.67017 6.01907 6.20060 6.34025 6.62438 6.75475 6.97728 7.15138 7.33235 7.64118 7.75498 7.83422 7.92369 8.47685 8.74242 9.31721 10.79706 Molecular weight = 339.02amu Principal moments of inertia in cm(-1) A = 0.027596 B = 0.002107 C = 0.002021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.401718 B =13284.191984 C =13854.313889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.062 3.938 3 Si 0.908 3.092 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.530 4.530 8 H 0.070 0.930 9 C 0.256 3.744 10 N -0.313 5.313 11 C 0.054 3.946 12 C -0.284 4.284 13 C 0.246 3.754 14 N -0.596 5.596 15 C 0.486 3.514 16 O -0.489 6.489 17 C 0.427 3.573 18 O -0.415 6.415 19 C -0.319 4.319 20 C -0.024 4.024 21 C -0.154 4.154 22 C -0.185 4.185 23 Cl -0.008 7.008 24 S 0.382 5.618 25 N -0.293 5.293 26 H 0.267 0.733 27 H 0.047 0.953 28 H 0.059 0.941 29 H 0.171 0.829 30 H 0.162 0.838 31 H 0.423 0.577 32 H 0.162 0.838 33 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.179 -22.342 0.342 27.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.141 4.141 3 Si 0.735 3.265 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.568 4.568 8 H 0.088 0.912 9 C 0.139 3.861 10 N -0.095 5.095 11 C -0.096 4.096 12 C -0.315 4.315 13 C -0.006 4.006 14 N -0.243 5.243 15 C 0.268 3.732 16 O -0.363 6.363 17 C 0.301 3.699 18 O -0.290 6.290 19 C -0.438 4.438 20 C -0.059 4.059 21 C -0.186 4.186 22 C -0.332 4.332 23 Cl 0.021 6.979 24 S 0.651 5.349 25 N -0.125 5.125 26 H 0.077 0.923 27 H 0.065 0.935 28 H 0.077 0.923 29 H 0.188 0.812 30 H 0.180 0.820 31 H 0.260 0.740 32 H 0.180 0.820 33 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 13.629 -21.205 0.889 25.223 hybrid contribution 1.798 0.155 -0.800 1.974 sum 15.428 -21.051 0.089 26.099 Atomic orbital electron populations 1.69920 1.06045 1.27621 1.49658 1.24950 0.94999 0.99608 0.94514 0.86265 0.80067 0.82386 0.77761 1.19538 1.20649 1.20725 1.21278 0.94036 0.89296 1.52203 0.91207 1.19819 0.85555 0.81227 0.99477 1.49187 1.22894 1.19679 1.17751 1.22595 1.00266 0.89995 0.96769 1.21508 1.02112 1.06304 1.01548 1.19036 0.91576 0.94873 0.95137 1.42111 1.28691 1.23755 1.29785 1.20544 0.85247 0.81626 0.85802 1.90644 1.61595 1.59411 1.24687 1.19709 0.82711 0.83661 0.83805 1.90716 1.58482 1.58055 1.21730 1.23707 1.07697 1.05209 1.07234 1.20800 0.93271 0.92485 0.99309 1.20018 1.03291 0.99499 0.95814 1.26224 1.06890 0.99546 1.00528 1.98394 1.95836 1.38065 1.65607 1.84402 1.21668 1.08326 1.20538 1.77406 1.03273 1.15835 1.15955 0.92312 0.93508 0.92330 0.81168 0.82046 0.74024 0.82028 0.82960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.89 13.29 55.43 0.74 -24.16 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.91 21.11 29.54 -169.99 -5.02 16.09 16 4 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 7 C -0.53 -14.44 9.24 -34.44 -0.32 -14.76 16 8 H 0.07 1.98 7.81 -52.49 -0.41 1.57 16 9 C 0.26 6.32 6.26 -5.19 -0.03 6.28 16 10 N -0.31 -6.99 3.67 -62.56 -0.23 -7.21 16 11 C 0.05 1.00 11.43 -17.24 -0.20 0.81 16 12 C -0.28 -5.16 9.60 -39.82 -0.38 -5.55 16 13 C 0.25 4.72 8.10 -154.52 -1.25 3.46 16 14 N -0.60 -9.20 5.43 -11.68 -0.06 -9.26 16 15 C 0.49 6.68 7.81 -11.80 -0.09 6.59 16 16 O -0.49 -7.11 11.56 5.42 0.06 -7.04 16 17 C 0.43 4.99 6.99 -33.96 -0.24 4.76 16 18 O -0.42 -5.24 16.86 5.23 0.09 -5.15 16 19 C -0.32 -3.16 6.24 -38.65 -0.24 -3.40 16 20 C -0.02 -0.19 9.96 -40.30 -0.40 -0.59 16 21 C -0.15 -1.10 10.08 -41.39 -0.42 -1.52 16 22 C -0.18 -1.48 6.83 29.42 0.20 -1.28 16 23 Cl -0.01 -0.06 29.27 -51.86 -1.52 -1.57 16 24 S 0.38 3.49 20.57 -107.50 -2.21 1.28 16 25 N -0.29 -6.55 12.42 31.42 0.39 -6.16 16 26 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 27 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 28 H 0.06 1.41 8.07 -51.93 -0.42 0.99 16 29 H 0.17 2.53 8.06 -52.49 -0.42 2.11 16 30 H 0.16 2.71 5.91 -52.48 -0.31 2.40 16 31 H 0.42 5.84 8.28 -40.82 -0.34 5.50 16 32 H 0.16 1.04 8.03 -52.48 -0.42 0.62 16 33 H 0.15 0.77 8.06 -52.49 -0.42 0.35 16 LS Contribution 332.60 15.07 5.01 5.01 Total: -1.00 -30.25 332.60 -8.52 -38.78 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: -2.30 Total: 3.01 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: -3.47 Total: -3.60 kcal Atomic # 7 Polarization: -47.63 SS G_CDS: 0.83 Total: -46.79 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: 0.15 Total: -12.20 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: 3.49 SS G_CDS: -2.21 Total: 1.28 kcal Atomic # 17 Polarization: -0.06 SS G_CDS: -1.52 Total: -1.57 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.25 -8.52 -38.78 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428734228.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.687 kcal (2) G-P(sol) polarization free energy of solvation -30.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds