Wall clock time and date at job start Tue Mar 31 2020 22:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86808 * 119.99908 * 2 1 4 4 H 1.48499 * 109.47011 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47152 * 300.00204 * 3 2 1 6 6 H 1.48494 * 109.46938 * 60.00422 * 3 2 1 7 7 C 1.37878 * 120.00226 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00012 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99812 * 359.97438 * 7 2 1 10 10 N 1.46501 * 109.47186 * 180.02562 * 9 7 2 11 11 C 1.34987 * 125.97342 * 124.97677 * 10 9 7 12 12 C 1.35215 * 107.87152 * 179.76256 * 11 10 9 13 13 C 1.40453 * 107.87173 * 0.36819 * 12 11 10 14 14 N 1.39957 * 125.98533 * 179.88794 * 13 12 11 15 15 C 1.34777 * 119.99678 * 359.43786 * 14 13 12 16 16 O 1.21433 * 120.00318 * 0.27925 * 15 14 13 17 17 C 1.48988 * 119.99989 * 180.27474 * 15 14 13 18 18 O 1.21653 * 120.00023 * 0.02562 * 17 15 14 19 19 C 1.41297 * 119.99834 * 180.02562 * 17 15 14 20 20 C 1.37612 * 125.47475 * 179.71963 * 19 17 15 21 21 C 1.36875 * 113.24362 * 179.83406 * 20 19 17 22 22 C 1.34519 * 115.13220 * 0.45759 * 21 20 19 23 23 Cl 1.73591 * 124.50327 * 179.76435 * 22 21 20 24 24 S 1.70609 * 110.99056 * 359.74279 * 22 21 20 25 25 N 1.31275 * 108.03674 * 359.62558 * 13 12 11 26 26 H 0.96992 * 120.00026 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.47362 * 59.99731 * 9 7 2 28 28 H 1.09002 * 109.47199 * 299.99674 * 9 7 2 29 29 H 1.07994 * 126.06217 * 359.97438 * 11 10 9 30 30 H 1.08005 * 126.06660 * 180.21460 * 12 11 10 31 31 H 0.97001 * 120.00535 * 179.72034 * 14 13 12 32 32 H 1.08003 * 123.37649 * 0.02562 * 20 19 17 33 33 H 1.08002 * 122.43387 * 180.21589 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3465 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 2.2424 -4.6223 0.8946 12 6 3.2573 -5.4455 0.5473 13 6 3.8688 -4.9153 -0.6006 14 7 4.9624 -5.4659 -1.2786 15 6 5.5302 -6.6030 -0.8301 16 8 5.0899 -7.1525 0.1592 17 6 6.6982 -7.1860 -1.5482 18 8 7.1397 -6.6354 -2.5391 19 6 7.2931 -8.3784 -1.0784 20 6 8.3680 -9.0156 -1.6548 21 6 8.7424 -10.1520 -0.9900 22 6 8.0004 -10.4521 0.0911 23 17 8.2567 -11.8368 1.1061 24 16 6.7743 -9.2905 0.3325 25 7 3.2316 -3.8157 -0.9295 26 1 -0.4850 0.8400 0.0004 27 1 0.6241 -2.5567 -0.8902 28 1 0.6248 -2.5571 0.8897 29 1 1.5786 -4.7516 1.7366 30 1 3.5479 -6.3491 1.0627 31 1 5.3143 -5.0271 -2.0688 32 1 8.8681 -8.6535 -2.5410 33 1 9.5708 -10.7654 -1.3125 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000428734228.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:09 Heat of formation + Delta-G solvation = 37.237308 kcal Electronic energy + Delta-G solvation = -22661.342638 eV Core-core repulsion = 18842.010336 eV Total energy + Delta-G solvation = -3819.332303 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 339.023 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.48477 -41.55323 -39.91529 -38.74877 -37.60149 -36.48006 -35.33115 -32.85459 -31.43409 -31.02431 -28.89561 -27.57219 -25.61524 -24.56546 -22.98301 -22.01707 -21.15735 -20.54163 -19.60506 -18.71069 -18.27267 -18.19486 -17.23844 -17.19062 -16.90256 -16.47161 -16.12618 -15.81452 -15.42691 -15.19762 -14.63862 -14.60373 -14.41652 -14.24922 -13.88898 -13.75145 -13.63318 -13.12155 -12.88564 -12.70258 -12.61027 -12.33308 -12.29589 -12.15423 -11.71620 -11.65552 -11.43373 -10.81373 -10.72975 -9.88548 -9.84928 -9.73593 -9.22784 -8.34542 -6.47910 -1.27590 -0.04228 0.08561 0.67954 1.02712 1.04568 1.07817 1.33505 1.36643 1.39188 1.51444 1.79049 2.03695 2.21921 2.34804 2.90104 2.97908 3.65416 3.90086 3.98706 4.18943 4.21936 4.61284 4.72866 4.80929 4.85200 4.88913 4.95076 5.02697 5.10459 5.55303 5.58862 5.77419 5.78501 6.04415 6.24742 6.55977 6.63713 6.95543 7.22147 8.73525 Molecular weight = 339.02amu Principal moments of inertia in cm(-1) A = 0.027596 B = 0.002107 C = 0.002021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.401718 B =13284.191984 C =13854.313889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.019 3.981 3 Si 0.970 3.030 4 H -0.276 1.276 5 H -0.274 1.274 6 H -0.269 1.269 7 C -0.547 4.547 8 H 0.051 0.949 9 C 0.271 3.729 10 N -0.340 5.340 11 C 0.060 3.940 12 C -0.285 4.285 13 C 0.256 3.744 14 N -0.600 5.600 15 C 0.487 3.513 16 O -0.494 6.494 17 C 0.441 3.559 18 O -0.429 6.429 19 C -0.342 4.342 20 C -0.005 4.005 21 C -0.150 4.150 22 C -0.177 4.177 23 Cl 0.001 6.999 24 S 0.360 5.640 25 N -0.341 5.341 26 H 0.273 0.727 27 H 0.023 0.977 28 H 0.063 0.937 29 H 0.207 0.793 30 H 0.179 0.821 31 H 0.428 0.572 32 H 0.180 0.820 33 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.942 -23.697 0.688 29.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.182 4.182 3 Si 0.795 3.205 4 H -0.200 1.200 5 H -0.199 1.199 6 H -0.194 1.194 7 C -0.585 4.585 8 H 0.070 0.930 9 C 0.152 3.848 10 N -0.122 5.122 11 C -0.089 4.089 12 C -0.316 4.316 13 C 0.002 3.998 14 N -0.249 5.249 15 C 0.271 3.729 16 O -0.368 6.368 17 C 0.316 3.684 18 O -0.305 6.305 19 C -0.461 4.461 20 C -0.040 4.040 21 C -0.181 4.181 22 C -0.325 4.325 23 Cl 0.029 6.971 24 S 0.629 5.371 25 N -0.173 5.173 26 H 0.082 0.918 27 H 0.041 0.959 28 H 0.081 0.919 29 H 0.223 0.777 30 H 0.196 0.804 31 H 0.266 0.734 32 H 0.197 0.803 33 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 15.399 -22.595 1.248 27.371 hybrid contribution 1.365 0.340 -0.877 1.658 sum 16.764 -22.254 0.371 27.864 Atomic orbital electron populations 1.69989 1.07128 1.28716 1.49967 1.25719 0.95845 1.02671 0.93937 0.85317 0.78378 0.78513 0.78309 1.20028 1.19948 1.19422 1.21417 0.93350 0.90999 1.52748 0.93025 1.19390 0.85615 0.81387 0.98370 1.48913 1.23535 1.20403 1.19329 1.23258 1.00472 0.88497 0.96656 1.21764 1.01839 1.06670 1.01279 1.19358 0.91571 0.93823 0.95080 1.42253 1.28119 1.24427 1.30087 1.21089 0.85446 0.80754 0.85652 1.90625 1.61839 1.59375 1.24935 1.19420 0.81688 0.83977 0.83333 1.90719 1.58771 1.58699 1.22323 1.23593 1.09061 1.05160 1.08306 1.21099 0.91855 0.91869 0.99165 1.20292 1.03559 0.99246 0.95027 1.26280 1.06245 0.99285 1.00673 1.98405 1.95696 1.37499 1.65453 1.84455 1.22706 1.09144 1.20810 1.77315 1.04594 1.17935 1.17407 0.91822 0.95923 0.91933 0.77666 0.80406 0.73362 0.80255 0.80331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.53 13.29 21.45 0.28 -51.24 16 2 C 0.02 1.03 5.46 84.65 0.46 1.49 16 3 Si 0.97 43.44 29.54 68.60 2.03 45.46 16 4 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 5 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 6 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 7 C -0.55 -30.51 9.24 25.60 0.24 -30.27 16 8 H 0.05 3.01 7.81 -2.91 -0.02 2.99 16 9 C 0.27 13.74 6.26 85.63 0.54 14.28 16 10 N -0.34 -15.44 3.67 -351.85 -1.29 -16.73 16 11 C 0.06 2.19 11.43 83.51 0.95 3.15 16 12 C -0.28 -10.17 9.60 22.11 0.21 -9.96 16 13 C 0.26 9.83 8.10 133.39 1.08 10.92 16 14 N -0.60 -18.52 5.43 -309.18 -1.68 -20.20 16 15 C 0.49 13.11 7.81 87.13 0.68 13.79 16 16 O -0.49 -13.91 11.56 -3.51 -0.04 -13.95 16 17 C 0.44 9.86 6.99 25.91 0.18 10.04 16 18 O -0.43 -10.42 16.86 -4.20 -0.07 -10.49 16 19 C -0.34 -6.22 6.24 22.87 0.14 -6.08 16 20 C 0.00 -0.06 9.96 21.80 0.22 0.16 16 21 C -0.15 -1.67 10.08 21.10 0.21 -1.45 16 22 C -0.18 -2.43 6.83 66.97 0.46 -1.97 16 23 Cl 0.00 0.01 29.27 -2.72 -0.08 -0.07 16 24 S 0.36 6.08 20.57 -56.49 -1.16 4.92 16 25 N -0.34 -15.63 12.42 -54.52 -0.68 -16.31 16 26 H 0.27 14.27 8.31 -92.71 -0.77 13.50 16 27 H 0.02 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.06 3.07 8.07 -2.39 -0.02 3.05 16 29 H 0.21 5.76 8.06 -2.91 -0.02 5.73 16 30 H 0.18 5.71 5.91 -2.91 -0.02 5.70 16 31 H 0.43 12.00 8.28 -92.71 -0.77 11.23 16 32 H 0.18 1.72 8.03 -2.91 -0.02 1.70 16 33 H 0.18 1.07 8.06 -2.91 -0.02 1.05 16 Total: -1.00 -65.15 332.60 3.12 -62.04 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: 0.43 Total: 12.49 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: 5.37 Total: 4.09 kcal Atomic # 7 Polarization: -101.12 SS G_CDS: -3.36 Total: -104.48 kcal Atomic # 8 Polarization: -24.33 SS G_CDS: -0.11 Total: -24.44 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.46 kcal Atomic # 16 Polarization: 6.08 SS G_CDS: -1.16 Total: 4.92 kcal Atomic # 17 Polarization: 0.01 SS G_CDS: -0.08 Total: -0.07 kcal Total: -65.15 3.12 -62.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428734228.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.273 kcal (2) G-P(sol) polarization free energy of solvation -65.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds