Wall clock time and date at job start Tue Mar 31 2020 22:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46956 * 111.00258 * 2 1 4 4 C 1.53041 * 109.36803 * 183.18823 * 3 2 1 5 5 N 1.46959 * 109.36319 * 301.59561 * 4 3 2 6 6 C 1.46898 * 111.00441 * 183.18920 * 5 4 3 7 7 C 1.52996 * 109.47493 * 163.85904 * 6 5 4 8 8 C 1.53039 * 109.46211 * 296.46972 * 7 6 5 9 9 C 1.53195 * 109.31236 * 178.61295 * 8 7 6 10 10 N 1.46923 * 108.77730 * 54.63554 * 9 8 7 11 11 C 1.34774 * 120.63218 * 126.36548 * 10 9 8 12 12 O 1.21589 * 120.00147 * 185.12614 * 11 10 9 13 13 N 1.34769 * 119.99927 * 5.12800 * 11 10 9 14 14 C 1.46503 * 120.00277 * 175.05373 * 13 11 10 15 15 C 1.52998 * 109.47199 * 179.97438 * 14 13 11 16 16 C 1.50707 * 109.47096 * 179.97438 * 15 14 13 17 17 H 1.08008 * 119.99768 * 0.02562 * 16 15 14 18 18 C 1.37869 * 120.00096 * 179.97438 * 16 15 14 19 19 N 1.31509 * 119.99996 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00012 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47232 * 60.00047 * 20 18 16 22 22 H 1.48497 * 109.47251 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.47287 * 300.00023 * 20 18 16 24 24 C 1.46927 * 118.73663 * 306.64245 * 10 9 8 25 25 C 1.52761 * 109.01151 * 53.31012 * 24 10 9 26 26 C 1.46959 * 110.88171 * 59.31722 * 5 4 3 27 27 C 1.46959 * 110.99924 * 123.79604 * 2 1 3 28 28 H 1.09006 * 109.47158 * 60.00480 * 1 2 3 29 29 H 1.09000 * 109.47297 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47500 * 300.00552 * 1 2 3 31 31 H 1.08998 * 109.48759 * 63.21448 * 3 2 1 32 32 H 1.09006 * 109.50543 * 303.16724 * 3 2 1 33 33 H 1.09001 * 109.49223 * 181.63457 * 4 3 2 34 34 H 1.08994 * 109.49426 * 61.55940 * 4 3 2 35 35 H 1.08998 * 109.47001 * 43.86013 * 6 5 4 36 36 H 1.09002 * 109.46829 * 283.86185 * 6 5 4 37 37 H 1.09002 * 109.44538 * 56.43968 * 7 6 5 38 38 H 1.08999 * 109.49386 * 58.65965 * 8 7 6 39 39 H 1.09000 * 109.49797 * 298.56392 * 8 7 6 40 40 H 1.09003 * 109.58649 * 294.84965 * 9 8 7 41 41 H 1.08995 * 109.58566 * 174.42489 * 9 8 7 42 42 H 0.96999 * 120.00205 * 355.04741 * 13 11 10 43 43 H 1.09000 * 109.47294 * 59.99331 * 14 13 11 44 44 H 1.09003 * 109.46741 * 299.99972 * 14 13 11 45 45 H 1.08997 * 109.47116 * 299.99435 * 15 14 13 46 46 H 1.08993 * 109.47455 * 60.00272 * 15 14 13 47 47 H 0.97009 * 120.00041 * 180.02562 * 19 18 16 48 48 H 1.09005 * 109.58696 * 173.14127 * 24 10 9 49 49 H 1.08995 * 109.59149 * 293.57004 * 24 10 9 50 50 H 1.09000 * 109.56879 * 185.55242 * 25 24 10 51 51 H 1.09005 * 109.36058 * 65.49565 * 25 24 10 52 52 H 1.09006 * 109.48486 * 60.64869 * 26 5 4 53 53 H 1.08994 * 109.49075 * 180.70918 * 26 5 4 54 54 H 1.09004 * 109.48962 * 296.78310 * 27 2 1 55 55 H 1.09004 * 109.48540 * 56.82059 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3719 0.0000 4 6 3.5234 1.3291 -0.0803 5 7 4.0500 0.5659 1.0599 6 6 5.5190 0.5659 1.0600 7 6 6.0289 0.1284 2.4345 8 6 5.5925 1.1484 3.4887 9 6 6.0750 0.6893 4.8682 10 7 7.5258 0.4639 4.8110 11 6 8.3495 1.0659 5.6915 12 8 9.5541 0.9463 5.5770 13 7 7.8381 1.8005 6.6990 14 6 8.7263 2.3650 7.7183 15 6 7.8986 3.1490 8.7385 16 6 8.8122 3.7291 9.7873 17 1 9.8769 3.5562 9.7314 18 6 8.2892 4.4814 10.8175 19 7 6.9929 4.6924 10.8852 20 14 9.4217 5.2010 12.1170 21 1 10.4020 6.1102 11.4708 22 1 8.6184 5.9619 13.1073 23 1 10.1452 4.1025 12.8064 24 6 8.0620 -0.4254 3.7716 25 6 7.5567 0.0418 2.4077 26 6 3.5233 -0.8060 1.0600 27 6 1.9956 -0.7632 1.1402 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.6937 1.8774 0.9173 32 1 1.6013 1.9132 -0.8601 33 1 3.9178 2.3448 -0.0512 34 1 3.8254 0.8479 -1.0105 35 1 5.8823 1.5698 0.8403 36 1 5.8823 -0.1263 0.3004 37 1 5.6142 -0.8490 2.6812 38 1 4.5053 1.2266 3.4909 39 1 6.0272 2.1206 3.2561 40 1 5.5717 -0.2382 5.1414 41 1 5.8538 1.4590 5.6075 42 1 6.8819 1.9557 6.7494 43 1 9.4454 3.0329 7.2440 44 1 9.2579 1.5587 8.2237 45 1 7.3674 3.9553 8.2328 46 1 7.1793 2.4815 9.2129 47 1 6.6249 5.2220 11.6098 48 1 9.1514 -0.3909 3.7875 49 1 7.7240 -1.4455 3.9534 50 1 7.8675 -0.6676 1.6407 51 1 7.9729 1.0244 2.1854 52 1 3.8253 -1.3115 0.1426 53 1 3.9177 -1.3469 1.9202 54 1 1.6936 -0.2820 2.0705 55 1 1.6009 -1.7788 1.1113 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000433411755.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:10 Heat of formation + Delta-G solvation = -46.240069 kcal Electronic energy + Delta-G solvation = -29982.851277 eV Core-core repulsion = 26053.321222 eV Total energy + Delta-G solvation = -3929.530054 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.46793 -40.34187 -38.78513 -36.69784 -36.43387 -34.91096 -33.93869 -32.17837 -31.86256 -31.21869 -29.77346 -27.44980 -26.44134 -24.83111 -24.49143 -24.25139 -23.34814 -22.75838 -21.48107 -20.68905 -20.46141 -19.09287 -18.48227 -17.27092 -17.09957 -16.75813 -16.50808 -16.20761 -15.95459 -15.79151 -15.74140 -15.50400 -15.35585 -15.27922 -15.04732 -14.79155 -14.33312 -14.22157 -14.16739 -13.89102 -13.40619 -13.32373 -13.14251 -13.05910 -12.91725 -12.83071 -12.53279 -12.47377 -12.24298 -12.22169 -12.17107 -12.08699 -11.77935 -11.65518 -11.62095 -11.44037 -11.31742 -11.24854 -11.05250 -10.59789 -10.15725 -9.44072 -9.38254 -9.19323 -8.23438 -6.33940 1.41974 1.44767 1.52465 1.71612 2.14137 2.41303 2.89023 3.00927 3.03298 3.11041 3.74048 3.84449 3.89955 3.99296 4.11553 4.18666 4.20702 4.32369 4.36047 4.42839 4.44275 4.46460 4.50903 4.51197 4.60099 4.63741 4.64970 4.72912 4.74650 4.83022 4.85179 4.86850 4.91819 4.95058 5.00732 5.01796 5.03934 5.08132 5.11839 5.15889 5.26978 5.32858 5.50511 5.51426 5.58508 5.66597 5.79585 5.97442 5.99051 6.00729 6.17309 6.18953 6.20858 6.78544 7.00113 7.35107 7.57516 8.88315 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.015474 B = 0.001941 C = 0.001781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.091557 B =14419.096008 C =15718.368019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.558 5.558 3 C 0.058 3.942 4 C 0.059 3.941 5 N -0.543 5.543 6 C 0.067 3.933 7 C -0.071 4.071 8 C -0.109 4.109 9 C 0.106 3.894 10 N -0.626 5.626 11 C 0.698 3.302 12 O -0.641 6.641 13 N -0.736 5.736 14 C 0.160 3.840 15 C 0.026 3.974 16 C -0.547 4.547 17 H 0.059 0.941 18 C 0.007 3.993 19 N -0.926 5.926 20 Si 0.966 3.034 21 H -0.269 1.269 22 H -0.280 1.280 23 H -0.268 1.268 24 C 0.127 3.873 25 C -0.120 4.120 26 C 0.059 3.941 27 C 0.057 3.943 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.024 0.976 31 H 0.034 0.966 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.037 0.963 35 H 0.070 0.930 36 H 0.043 0.957 37 H 0.083 0.917 38 H 0.092 0.908 39 H 0.048 0.952 40 H 0.086 0.914 41 H 0.072 0.928 42 H 0.403 0.597 43 H 0.041 0.959 44 H 0.043 0.957 45 H 0.007 0.993 46 H 0.008 0.992 47 H 0.266 0.734 48 H 0.069 0.931 49 H 0.082 0.918 50 H 0.095 0.905 51 H 0.052 0.948 52 H 0.036 0.964 53 H 0.090 0.910 54 H 0.035 0.965 55 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.825 -12.607 -26.051 32.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.283 5.283 3 C -0.070 4.070 4 C -0.069 4.069 5 N -0.268 5.268 6 C -0.060 4.060 7 C -0.090 4.090 8 C -0.147 4.147 9 C -0.016 4.016 10 N -0.363 5.363 11 C 0.399 3.601 12 O -0.523 6.523 13 N -0.393 5.393 14 C 0.035 3.965 15 C -0.012 4.012 16 C -0.586 4.586 17 H 0.077 0.923 18 C -0.192 4.192 19 N -0.565 5.565 20 Si 0.791 3.209 21 H -0.194 1.194 22 H -0.205 1.205 23 H -0.193 1.193 24 C 0.004 3.996 25 C -0.159 4.159 26 C -0.069 4.069 27 C -0.071 4.071 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.042 0.958 31 H 0.052 0.948 32 H 0.105 0.895 33 H 0.101 0.899 34 H 0.055 0.945 35 H 0.088 0.912 36 H 0.061 0.939 37 H 0.101 0.899 38 H 0.111 0.889 39 H 0.067 0.933 40 H 0.104 0.896 41 H 0.091 0.909 42 H 0.241 0.759 43 H 0.060 0.940 44 H 0.062 0.938 45 H 0.025 0.975 46 H 0.027 0.973 47 H 0.075 0.925 48 H 0.087 0.913 49 H 0.100 0.900 50 H 0.113 0.887 51 H 0.071 0.929 52 H 0.054 0.946 53 H 0.108 0.892 54 H 0.053 0.947 55 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -13.114 -12.616 -26.016 31.749 hybrid contribution 0.041 0.767 0.925 1.202 sum -13.074 -11.849 -25.091 30.673 Atomic orbital electron populations 1.22373 0.86330 1.02635 1.00921 1.62212 1.08750 1.14154 1.43147 1.22159 0.94542 0.89277 1.01023 1.22136 0.94363 0.98681 0.91706 1.62103 1.07795 1.14126 1.42793 1.22059 0.86536 1.01258 0.96177 1.21041 0.93987 0.99599 0.94342 1.21755 1.02070 0.98212 0.92659 1.21879 0.78757 1.01989 0.99022 1.47368 1.07140 1.49306 1.32483 1.16119 0.84899 0.78894 0.80167 1.90829 1.14981 1.69009 1.77521 1.45431 1.11477 1.55483 1.26905 1.21078 0.92290 0.95637 0.87453 1.19109 0.95120 0.94234 0.92731 1.21427 0.94273 1.32906 1.09958 0.92283 1.25880 0.96726 0.96420 1.00188 1.70054 1.12757 1.40235 1.33488 0.85482 0.78575 0.78612 0.78278 1.19383 1.20511 1.19310 1.21460 0.99335 0.92627 0.86150 1.21820 0.95740 1.02140 0.96180 1.22190 0.94150 0.89356 1.01229 1.22186 0.94720 0.98756 0.91473 0.90749 0.90672 0.95779 0.94812 0.89538 0.89877 0.94492 0.91182 0.93887 0.89852 0.88938 0.93317 0.89595 0.90942 0.75888 0.94040 0.93822 0.97485 0.97317 0.92520 0.91283 0.89990 0.88659 0.92902 0.94563 0.89218 0.94718 0.89471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.60 127.69 1.23 1.49 16 2 N -0.56 -7.32 4.97 -921.95 -4.58 -11.90 16 3 C 0.06 0.74 5.62 86.31 0.49 1.22 16 4 C 0.06 0.76 5.58 86.31 0.48 1.24 16 5 N -0.54 -7.14 4.03 -895.76 -3.61 -10.75 16 6 C 0.07 0.85 4.38 86.30 0.38 1.23 16 7 C -0.07 -0.96 2.16 -10.77 -0.02 -0.98 16 8 C -0.11 -1.84 5.25 30.67 0.16 -1.68 16 9 C 0.11 2.15 6.39 86.36 0.55 2.70 16 10 N -0.63 -16.93 2.98 -837.75 -2.50 -19.42 16 11 C 0.70 26.17 8.30 179.06 1.49 27.66 16 12 O -0.64 -29.25 15.77 -4.00 -0.06 -29.31 16 13 N -0.74 -28.04 5.46 -478.54 -2.62 -30.66 16 14 C 0.16 7.29 5.62 86.38 0.49 7.78 16 15 C 0.03 1.33 5.09 29.85 0.15 1.48 16 16 C -0.55 -31.18 9.11 25.60 0.23 -30.95 16 17 H 0.06 3.29 7.74 -2.91 -0.02 3.26 16 18 C 0.01 0.38 5.46 84.65 0.46 0.84 16 19 N -0.93 -54.78 13.29 21.44 0.28 -54.49 16 20 Si 0.97 44.11 29.54 68.60 2.03 46.14 16 21 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 22 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 23 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 24 C 0.13 2.78 6.41 86.22 0.55 3.33 16 25 C -0.12 -1.91 5.35 30.53 0.16 -1.75 16 26 C 0.06 0.70 5.44 86.31 0.47 1.17 16 27 C 0.06 0.69 5.62 86.31 0.49 1.18 16 28 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 29 H 0.07 0.65 8.13 -2.39 -0.02 0.63 16 30 H 0.02 0.26 8.14 -2.39 -0.02 0.24 16 31 H 0.03 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.09 0.92 8.14 -2.38 -0.02 0.90 16 33 H 0.08 0.99 8.02 -2.39 -0.02 0.97 16 34 H 0.04 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.07 0.97 7.91 -2.39 -0.02 0.95 16 36 H 0.04 0.50 8.05 -2.39 -0.02 0.49 16 37 H 0.08 1.00 6.60 -2.39 -0.02 0.98 16 38 H 0.09 1.48 7.67 -2.39 -0.02 1.47 16 39 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.09 1.44 8.14 -2.39 -0.02 1.43 16 41 H 0.07 1.58 5.64 -2.39 -0.01 1.57 16 42 H 0.40 13.43 5.96 -92.71 -0.55 12.88 16 43 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 44 H 0.04 2.06 8.14 -2.39 -0.02 2.04 16 45 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 46 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 47 H 0.27 14.79 8.31 -92.70 -0.77 14.02 16 48 H 0.07 1.88 7.00 -2.38 -0.02 1.86 16 49 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 50 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 51 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 52 H 0.04 0.47 8.14 -2.38 -0.02 0.45 16 53 H 0.09 0.93 6.55 -2.39 -0.02 0.91 16 54 H 0.03 0.49 8.14 -2.39 -0.02 0.47 16 55 H 0.09 0.88 8.13 -2.39 -0.02 0.86 16 Total: -1.00 -70.18 418.70 -3.01 -73.20 By element: Atomic # 1 Polarization: 20.94 SS G_CDS: 0.29 Total: 21.23 kcal Atomic # 6 Polarization: 8.21 SS G_CDS: 7.75 Total: 15.96 kcal Atomic # 7 Polarization: -114.20 SS G_CDS: -13.01 Total: -127.21 kcal Atomic # 8 Polarization: -29.25 SS G_CDS: -0.06 Total: -29.31 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -70.18 -3.01 -73.20 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000433411755.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.955 kcal (2) G-P(sol) polarization free energy of solvation -70.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds