Wall clock time and date at job start Tue Mar 31 2020 22:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33397 * 125.19939 * 2 1 4 4 C 1.38468 * 114.91639 * 179.76903 * 3 2 1 5 5 Br 1.89101 * 122.54572 * 180.24918 * 4 3 2 6 6 C 1.33429 * 114.90440 * 0.42822 * 4 3 2 7 7 S 1.76199 * 125.20432 * 179.86068 * 6 4 3 8 8 O 1.42096 * 106.40321 * 66.17795 * 7 6 4 9 9 O 1.42108 * 106.39883 * 293.25804 * 7 6 4 10 10 N 1.65597 * 107.22117 * 179.71953 * 7 6 4 11 11 C 1.46499 * 119.99926 * 64.72196 * 10 7 6 12 12 C 1.50700 * 109.46995 * 165.27893 * 11 10 7 13 13 H 1.07999 * 120.00045 * 0.02562 * 12 11 10 14 14 C 1.37884 * 119.99889 * 180.02562 * 12 11 10 15 15 N 1.31518 * 119.99999 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 119.99912 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47449 * 89.99869 * 16 14 12 18 18 H 1.48506 * 109.47067 * 210.00130 * 16 14 12 19 19 H 1.48498 * 109.47228 * 329.99775 * 16 14 12 20 20 S 1.75881 * 125.19719 * 179.97438 * 2 1 3 21 21 H 1.09002 * 109.47012 * 180.02562 * 1 2 3 22 22 H 1.09007 * 109.47134 * 300.03010 * 1 2 3 23 23 H 1.08998 * 109.46897 * 60.02830 * 1 2 3 24 24 H 1.08004 * 122.54241 * 359.97438 * 3 2 1 25 25 H 0.97001 * 120.00224 * 245.00409 * 10 7 6 26 26 H 1.09007 * 109.47241 * 285.27714 * 11 10 7 27 27 H 1.08995 * 109.47308 * 45.27753 * 11 10 7 28 28 H 0.96994 * 120.00181 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0901 0.0000 4 6 3.6384 0.8429 0.0051 5 35 4.9238 2.2297 0.0130 6 6 3.9752 -0.4482 0.0001 7 16 5.6247 -1.0676 0.0011 8 8 6.1911 -0.6988 1.2511 9 8 6.1924 -0.6992 -1.2484 10 7 5.5276 -2.7207 0.0014 11 6 4.9445 -3.4204 -1.1461 12 6 5.2933 -4.8846 -1.0719 13 1 5.8894 -5.2568 -0.2518 14 6 4.8515 -5.7490 -2.0510 15 7 4.1252 -5.2958 -3.0494 16 14 5.2845 -7.5638 -1.9595 17 1 4.2343 -8.2855 -1.1969 18 1 5.3709 -8.1220 -3.3329 19 1 6.5926 -7.7267 -1.2758 20 16 2.5207 -1.4373 0.0006 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5143 0.8898 23 1 -0.3633 0.5134 -0.8902 24 1 1.8668 2.0896 -0.0004 25 1 5.8531 -3.2256 0.7630 26 1 3.8608 -3.3038 -1.1304 27 1 5.3419 -2.9985 -2.0692 28 1 3.8141 -5.9039 -3.7380 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000487342038.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:18 Heat of formation + Delta-G solvation = -68.224355 kcal Electronic energy + Delta-G solvation = -17148.468283 eV Core-core repulsion = 14077.453239 eV Total energy + Delta-G solvation = -3071.015044 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 338.939 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.35548 -38.34982 -37.06231 -36.61834 -34.20286 -33.83663 -31.57750 -28.80211 -28.33848 -24.56850 -24.04982 -21.80023 -19.98748 -19.72918 -18.73189 -17.59742 -17.44246 -17.29052 -16.51149 -15.79226 -15.50054 -15.18891 -14.74013 -14.22922 -14.16730 -13.94172 -13.78885 -13.65166 -13.31291 -13.26263 -13.22970 -12.75537 -12.57096 -12.39140 -12.15796 -11.96543 -11.89062 -11.66022 -11.43847 -10.91834 -10.28023 -10.18658 -9.64077 -8.25159 -6.37603 -0.85813 -0.77528 -0.29128 0.43962 0.72355 1.07299 1.46098 1.47628 1.58154 1.94762 2.42092 2.45876 3.09980 3.52323 3.60932 3.89134 4.27706 4.43262 4.48981 4.71472 4.80102 4.90941 5.18213 5.20887 5.22647 5.72570 5.90570 6.21751 6.74472 7.31795 8.85900 Molecular weight = 338.94amu Principal moments of inertia in cm(-1) A = 0.018216 B = 0.004772 C = 0.004028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.770881 B = 5866.335349 C = 6950.058387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.126 4.126 3 C -0.158 4.158 4 C 0.022 3.978 5 Br -0.017 7.017 6 C -0.802 4.802 7 S 2.714 3.286 8 O -0.968 6.968 9 O -0.975 6.975 10 N -1.101 6.101 11 C 0.250 3.750 12 C -0.550 4.550 13 H 0.077 0.923 14 C 0.013 3.987 15 N -0.922 5.922 16 Si 0.971 3.029 17 H -0.267 1.267 18 H -0.284 1.284 19 H -0.266 1.266 20 S 0.261 5.739 21 H 0.081 0.919 22 H 0.111 0.889 23 H 0.106 0.894 24 H 0.188 0.812 25 H 0.423 0.577 26 H 0.030 0.970 27 H 0.009 0.991 28 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.938 13.144 7.549 17.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.247 4.247 3 C -0.187 4.187 4 C -0.077 4.077 5 Br 0.067 6.933 6 C -1.006 5.006 7 S 2.800 3.200 8 O -0.958 6.958 9 O -0.965 6.965 10 N -0.865 5.865 11 C 0.126 3.874 12 C -0.590 4.590 13 H 0.095 0.905 14 C -0.188 4.188 15 N -0.561 5.561 16 Si 0.795 3.205 17 H -0.193 1.193 18 H -0.209 1.209 19 H -0.190 1.190 20 S 0.527 5.473 21 H 0.100 0.900 22 H 0.130 0.870 23 H 0.124 0.876 24 H 0.205 0.795 25 H 0.260 0.740 26 H 0.048 0.952 27 H 0.027 0.973 28 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.183 12.643 7.227 16.704 hybrid contribution -0.047 0.107 -0.035 0.123 sum -8.231 12.750 7.192 16.794 Atomic orbital electron populations 1.20730 0.83289 1.05019 1.05834 1.25792 1.02912 0.95551 1.00401 1.20246 0.88800 1.02358 1.07334 1.20585 0.96041 0.90453 1.00604 1.96800 1.53155 1.46197 1.97106 1.35619 1.29161 1.06854 1.28974 1.01095 0.72993 0.72588 0.73340 1.93547 1.75841 1.82632 1.43789 1.93563 1.74880 1.82854 1.45165 1.55302 1.77804 1.23617 1.29769 1.18942 0.93075 0.93069 0.82300 1.21563 1.34665 0.92339 1.10396 0.90527 1.25850 0.94521 1.04001 0.94424 1.70047 1.36084 1.37390 1.12571 0.85351 0.79088 0.78492 0.77521 1.19258 1.20911 1.19016 1.84840 0.90331 1.05551 1.66546 0.90023 0.87027 0.87594 0.79485 0.74024 0.95231 0.97254 0.92101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.14 10.38 71.24 0.74 -0.40 15 2 C -0.13 -2.81 6.51 24.59 0.16 -2.65 15 3 C -0.16 -3.76 9.91 21.23 0.21 -3.55 15 4 C 0.02 0.69 6.17 21.24 0.13 0.82 15 5 Br -0.02 -0.52 33.13 -20.37 -0.67 -1.20 15 6 C -0.80 -28.81 6.46 66.73 0.43 -28.38 15 7 S 2.71 112.32 5.05 -56.49 -0.29 112.04 15 8 O -0.97 -40.45 18.02 -128.00 -2.31 -42.76 15 9 O -0.97 -46.10 17.50 -128.00 -2.24 -48.34 15 10 N -1.10 -46.36 5.81 -190.79 -1.11 -47.47 15 11 C 0.25 12.48 5.71 85.63 0.49 12.97 15 12 C -0.55 -28.91 9.27 25.60 0.24 -28.67 15 13 H 0.08 3.79 7.65 -2.91 -0.02 3.76 15 14 C 0.01 0.67 5.46 84.66 0.46 1.13 15 15 N -0.92 -51.67 13.29 21.45 0.28 -51.39 15 16 Si 0.97 41.24 29.54 68.60 2.03 43.27 15 17 H -0.27 -10.82 7.11 99.48 0.71 -10.11 15 18 H -0.28 -11.93 7.11 99.48 0.71 -11.22 15 19 H -0.27 -10.94 7.11 99.48 0.71 -10.24 15 20 S 0.26 8.01 21.04 -56.49 -1.19 6.82 15 21 H 0.08 0.99 8.14 -2.39 -0.02 0.97 15 22 H 0.11 0.91 8.14 -2.38 -0.02 0.89 15 23 H 0.11 1.01 8.14 -2.39 -0.02 0.99 15 24 H 0.19 3.07 8.06 -2.91 -0.02 3.05 15 25 H 0.42 15.85 8.54 -96.74 -0.83 15.02 15 26 H 0.03 1.46 6.22 -2.38 -0.01 1.44 15 27 H 0.01 0.53 7.76 -2.39 -0.02 0.51 15 28 H 0.27 14.17 8.31 -92.71 -0.77 13.40 15 Total: -1.00 -67.03 295.52 -2.24 -69.28 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: 0.39 Total: 8.47 kcal Atomic # 6 Polarization: -51.58 SS G_CDS: 2.86 Total: -48.72 kcal Atomic # 7 Polarization: -98.03 SS G_CDS: -0.82 Total: -98.86 kcal Atomic # 8 Polarization: -86.55 SS G_CDS: -4.55 Total: -91.10 kcal Atomic # 14 Polarization: 41.24 SS G_CDS: 2.03 Total: 43.27 kcal Atomic # 16 Polarization: 120.34 SS G_CDS: -1.47 Total: 118.86 kcal Atomic # 35 Polarization: -0.52 SS G_CDS: -0.67 Total: -1.20 kcal Total: -67.03 -2.24 -69.28 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000487342038.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.051 kcal (2) G-P(sol) polarization free energy of solvation -67.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds