Wall clock time and date at job start Tue Mar 31 2020 22:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35925 * 116.99722 * 2 1 4 4 C 1.38727 * 120.05502 * 359.97438 * 3 2 1 5 5 C 1.38151 * 119.98392 * 179.97438 * 4 3 2 6 6 C 1.38258 * 120.08786 * 359.97286 * 5 4 3 7 7 S 1.76200 * 119.94824 * 180.02562 * 6 5 4 8 8 O 1.42103 * 106.40324 * 228.54261 * 7 6 5 9 9 O 1.42100 * 106.40079 * 1.46172 * 7 6 5 10 10 N 1.65593 * 107.21909 * 115.00381 * 7 6 5 11 11 C 1.46501 * 120.00644 * 65.00020 * 10 7 6 12 12 C 1.50693 * 109.47660 * 164.99745 * 11 10 7 13 13 H 1.08004 * 120.00117 * 0.02562 * 12 11 10 14 14 C 1.37877 * 120.00351 * 179.97438 * 12 11 10 15 15 N 1.31520 * 119.99720 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00329 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47170 * 359.97438 * 16 14 12 18 18 H 1.48493 * 109.47540 * 120.00093 * 16 14 12 19 19 H 1.48497 * 109.47076 * 240.00360 * 16 14 12 20 20 C 1.38369 * 120.10612 * 0.02562 * 6 5 4 21 21 Cl 1.73600 * 119.98964 * 179.97438 * 20 6 5 22 22 C 1.38366 * 120.01428 * 359.78359 * 20 6 5 23 23 Cl 1.73598 * 120.04032 * 180.25587 * 22 20 6 24 24 H 1.09002 * 109.47382 * 60.00054 * 1 2 3 25 25 H 1.09001 * 109.46938 * 300.00041 * 1 2 3 26 26 H 1.09004 * 109.46926 * 180.02562 * 1 2 3 27 27 H 1.08000 * 120.00399 * 359.97438 * 4 3 2 28 28 H 1.08003 * 119.95634 * 180.02562 * 5 4 3 29 29 H 0.97001 * 119.99835 * 244.99857 * 10 7 6 30 30 H 1.09002 * 109.46953 * 285.00514 * 11 10 7 31 31 H 1.09002 * 109.46665 * 44.99933 * 11 10 7 32 32 H 0.96996 * 120.00244 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2916 2.3753 -0.0005 5 6 1.9202 3.6055 0.0000 6 6 3.3009 3.6783 0.0016 7 16 4.0989 5.2492 0.0030 8 8 5.0864 5.1986 -1.0175 9 8 3.0655 6.2241 0.0368 10 7 4.9152 5.3831 1.4375 11 6 6.0338 4.4836 1.7306 12 6 6.8263 5.0288 2.8905 13 1 6.5266 5.9528 3.3626 14 6 7.9335 4.3475 3.3499 15 7 8.2982 3.2220 2.7755 16 14 8.9156 5.0230 4.7882 17 1 8.3029 6.2935 5.2528 18 1 8.9111 4.0361 5.8977 19 1 10.3137 5.2769 4.3572 20 6 4.0570 2.5195 0.0022 21 17 5.7904 2.6145 0.0036 22 6 3.4319 1.2851 0.0057 23 17 4.3799 -0.1691 0.0131 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 0.2130 2.3198 -0.0014 28 1 1.3324 4.5115 0.0000 29 1 4.6529 6.0572 2.0837 30 1 5.6487 3.4962 1.9856 31 1 6.6777 4.4072 0.8545 32 1 9.0773 2.7429 3.0984 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000487410080.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:30 Heat of formation + Delta-G solvation = -104.479812 kcal Electronic energy + Delta-G solvation = -23108.890080 eV Core-core repulsion = 19248.686861 eV Total energy + Delta-G solvation = -3860.203219 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 338.993 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.51387 -39.12943 -38.36585 -37.66661 -37.53665 -36.92596 -36.40447 -34.08211 -32.16733 -31.64146 -28.69632 -28.41191 -24.66872 -24.36428 -23.95170 -20.68884 -19.89988 -19.31698 -18.58652 -18.05915 -17.66113 -17.15494 -16.98070 -16.60978 -16.38992 -15.90977 -15.53022 -15.21955 -15.05250 -14.58637 -14.38719 -14.29402 -13.57013 -13.46703 -13.23893 -13.12535 -12.95506 -12.78392 -12.73583 -12.67248 -12.46168 -12.39638 -12.23003 -12.08450 -11.91813 -11.82205 -10.90138 -10.74885 -10.13508 -9.88115 -9.80850 -8.16511 -6.28073 -0.70530 -0.48089 -0.33054 0.59276 0.98200 1.45217 1.46962 1.58362 1.85854 1.98491 2.19540 2.45617 2.65177 3.16849 3.26973 3.51685 3.66546 3.87623 4.02479 4.17709 4.33639 4.39519 4.62897 4.67287 4.68072 4.79953 5.09145 5.36662 5.40306 5.80633 5.96169 6.04886 6.35993 6.84296 7.39793 8.92593 Molecular weight = 338.99amu Principal moments of inertia in cm(-1) A = 0.013547 B = 0.004988 C = 0.004143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.401276 B = 5612.174347 C = 6757.533321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.006 3.994 2 O -0.309 6.309 3 C 0.204 3.796 4 C -0.202 4.202 5 C 0.036 3.964 6 C -0.712 4.712 7 S 2.706 3.294 8 O -0.981 6.981 9 O -0.974 6.974 10 N -1.101 6.101 11 C 0.248 3.752 12 C -0.552 4.552 13 H 0.072 0.928 14 C 0.014 3.986 15 N -0.915 5.915 16 Si 0.965 3.035 17 H -0.262 1.262 18 H -0.279 1.279 19 H -0.283 1.283 20 C 0.064 3.936 21 Cl -0.004 7.004 22 C -0.111 4.111 23 Cl -0.038 7.038 24 H 0.082 0.918 25 H 0.080 0.920 26 H 0.127 0.873 27 H 0.200 0.800 28 H 0.187 0.813 29 H 0.420 0.580 30 H 0.025 0.975 31 H 0.023 0.977 32 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.922 -5.860 -4.886 20.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 O -0.221 6.221 3 C 0.154 3.846 4 C -0.221 4.221 5 C 0.017 3.983 6 C -0.800 4.800 7 S 2.795 3.205 8 O -0.971 6.971 9 O -0.965 6.965 10 N -0.864 5.864 11 C 0.124 3.876 12 C -0.591 4.591 13 H 0.090 0.910 14 C -0.187 4.187 15 N -0.553 5.553 16 Si 0.790 3.210 17 H -0.186 1.186 18 H -0.205 1.205 19 H -0.209 1.209 20 C 0.035 3.965 21 Cl 0.026 6.974 22 C -0.140 4.140 23 Cl -0.009 7.009 24 H 0.101 0.899 25 H 0.098 0.902 26 H 0.145 0.855 27 H 0.217 0.783 28 H 0.204 0.796 29 H 0.256 0.744 30 H 0.043 0.957 31 H 0.041 0.959 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -18.456 -5.887 -5.684 20.189 hybrid contribution 0.893 -0.438 1.167 1.534 sum -17.563 -6.325 -4.517 19.205 Atomic orbital electron populations 1.23715 0.74329 1.06883 1.03792 1.86217 1.25168 1.24517 1.86191 1.18813 0.89080 0.87021 0.89666 1.21834 1.02945 0.89490 1.07866 1.21227 0.90089 1.00792 0.86233 1.30762 1.06305 1.19196 1.23728 1.01265 0.72789 0.73250 0.73179 1.93571 1.59674 1.86879 1.56944 1.93509 1.58182 1.57699 1.87068 1.55290 1.45521 1.47483 1.38106 1.19476 0.83406 0.88564 0.96194 1.21716 1.12078 1.09213 1.16119 0.91029 1.25767 0.98137 0.95109 0.99682 1.70065 1.26552 1.16420 1.42302 0.85398 0.78162 0.78644 0.78758 1.18638 1.20496 1.20876 1.20550 0.87878 0.92777 0.95322 1.98601 1.06255 1.97625 1.94936 1.20129 0.90778 0.87805 1.15331 1.98377 1.71496 1.33949 1.97049 0.89903 0.90151 0.85516 0.78266 0.79619 0.74429 0.95693 0.95933 0.92563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.05 9.81 113.37 1.11 1.16 16 2 O -0.31 -6.12 9.96 -92.71 -0.92 -7.04 16 3 C 0.20 4.93 6.68 22.52 0.15 5.08 16 4 C -0.20 -3.74 9.04 22.37 0.20 -3.53 16 5 C 0.04 0.84 9.54 22.25 0.21 1.05 16 6 C -0.71 -23.48 5.89 22.31 0.13 -23.35 16 7 S 2.71 101.68 5.44 -56.49 -0.31 101.38 16 8 O -0.98 -43.46 15.96 -128.00 -2.04 -45.50 16 9 O -0.97 -34.89 16.96 -128.00 -2.17 -37.06 16 10 N -1.10 -45.32 5.99 -190.79 -1.14 -46.46 16 11 C 0.25 12.45 3.86 85.63 0.33 12.78 16 12 C -0.55 -29.65 9.27 25.60 0.24 -29.41 16 13 H 0.07 3.64 7.65 -2.91 -0.02 3.62 16 14 C 0.01 0.75 5.46 84.65 0.46 1.21 16 15 N -0.91 -52.27 13.29 21.45 0.28 -51.99 16 16 Si 0.97 42.67 29.54 68.60 2.03 44.70 16 17 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 18 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 19 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 20 C 0.06 2.35 6.09 22.33 0.14 2.49 16 21 Cl 0.00 -0.18 19.60 -2.72 -0.05 -0.23 16 22 C -0.11 -3.59 6.34 22.43 0.14 -3.45 16 23 Cl -0.04 -1.22 27.51 -2.72 -0.07 -1.30 16 24 H 0.08 0.37 7.66 -2.39 -0.02 0.35 16 25 H 0.08 0.41 7.66 -2.39 -0.02 0.39 16 26 H 0.13 0.56 8.14 -2.38 -0.02 0.54 16 27 H 0.20 1.58 6.30 -2.91 -0.02 1.56 16 28 H 0.19 3.29 7.33 -2.91 -0.02 3.27 16 29 H 0.42 15.33 8.54 -96.75 -0.83 14.50 16 30 H 0.03 1.31 6.14 -2.39 -0.01 1.29 16 31 H 0.02 1.26 5.88 -2.39 -0.01 1.24 16 32 H 0.27 14.36 8.31 -92.71 -0.77 13.59 16 Total: -1.00 -71.64 311.15 -0.91 -72.55 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: 0.38 Total: 6.92 kcal Atomic # 6 Polarization: -39.08 SS G_CDS: 3.12 Total: -35.97 kcal Atomic # 7 Polarization: -97.59 SS G_CDS: -0.86 Total: -98.45 kcal Atomic # 8 Polarization: -84.46 SS G_CDS: -5.14 Total: -89.60 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Atomic # 16 Polarization: 101.68 SS G_CDS: -0.31 Total: 101.38 kcal Atomic # 17 Polarization: -1.40 SS G_CDS: -0.13 Total: -1.53 kcal Total: -71.64 -0.91 -72.55 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000487410080.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.927 kcal (2) G-P(sol) polarization free energy of solvation -71.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds