Wall clock time and date at job start Tue Mar 31 2020 22:48:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47136 * 271.71786 * 3 2 1 5 5 C 1.36939 * 119.99912 * 275.00475 * 4 3 2 6 6 H 1.08000 * 120.00447 * 0.88701 * 5 4 3 7 7 C 1.38812 * 119.99480 * 180.89010 * 5 4 3 8 8 N 1.31617 * 120.00435 * 318.98886 * 7 5 4 9 9 Si 1.86798 * 119.99827 * 138.99594 * 7 5 4 10 10 H 1.48499 * 109.47398 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47389 * 119.99505 * 9 7 5 12 12 H 1.48497 * 109.47426 * 239.99768 * 9 7 5 13 13 S 1.65593 * 119.99898 * 95.00311 * 4 3 2 14 14 O 1.42100 * 106.40420 * 243.74287 * 13 4 3 15 15 O 1.42101 * 106.40405 * 16.65943 * 13 4 3 16 16 C 1.76196 * 107.21814 * 130.20272 * 13 4 3 17 17 C 1.34224 * 126.57204 * 122.22842 * 16 13 4 18 18 N 1.36939 * 109.89886 * 180.02562 * 17 16 13 19 19 H 0.96999 * 124.98519 * 179.97438 * 18 17 16 20 20 C 1.37415 * 110.02027 * 359.97438 * 18 17 16 21 21 N 1.32691 * 133.16778 * 179.97438 * 20 18 17 22 22 C 1.31606 * 121.70404 * 180.02562 * 21 20 18 23 23 C 1.38618 * 121.58895 * 0.02562 * 22 21 20 24 24 C 1.38353 * 119.39024 * 359.97438 * 23 22 21 25 25 Cl 1.73608 * 120.98848 * 180.02562 * 24 23 22 26 26 C 1.39816 * 118.02237 * 359.70313 * 24 23 22 27 27 H 4.40644 * 5.51404 * 180.02562 * 4 1 2 28 28 H 1.09006 * 109.46659 * 151.72071 * 3 2 1 29 29 H 1.08997 * 109.47279 * 31.71985 * 3 2 1 30 30 H 0.96999 * 120.00109 * 188.75931 * 8 7 5 31 31 H 1.08000 * 125.04786 * 359.97438 * 17 16 13 32 32 H 1.07999 * 119.20622 * 179.97438 * 22 21 20 33 33 H 1.07998 * 120.30200 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1344 -0.0405 1.3806 5 6 3.2646 1.1200 2.0957 6 1 2.9937 2.0642 1.6469 7 6 3.7448 1.0828 3.3976 8 7 3.3513 0.1312 4.2173 9 14 4.9494 2.3835 3.9863 10 1 5.2310 3.3340 2.8807 11 1 4.3615 3.1193 5.1344 12 1 6.2137 1.7310 4.4116 13 16 3.5289 -1.4905 2.0764 14 8 2.6256 -1.6759 3.1575 15 8 3.6685 -2.4216 1.0120 16 6 5.1291 -1.3079 2.7908 17 6 5.4565 -1.4984 4.0785 18 7 6.7932 -1.2622 4.2594 19 1 7.2614 -1.3356 5.1058 20 6 7.3738 -0.9062 3.0659 21 7 8.6137 -0.5843 2.7199 22 6 8.9271 -0.2730 1.4802 23 6 7.9767 -0.2649 0.4712 24 6 6.6661 -0.5919 0.7702 25 17 5.4424 -0.5958 -0.4613 26 6 6.3577 -0.9258 2.0925 27 1 -1.0500 -0.0002 0.0000 28 1 3.0089 0.9059 -0.4869 29 1 3.0098 -0.8733 -0.5403 30 1 3.5836 0.1747 5.1581 31 1 4.7679 -1.7933 4.8565 32 1 9.9492 -0.0169 1.2435 33 1 8.2568 -0.0058 -0.5392 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490986911.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:08 Heat of formation + Delta-G solvation = 100.680886 kcal Electronic energy + Delta-G solvation = -26210.613575 eV Core-core repulsion = 22394.032392 eV Total energy + Delta-G solvation = -3816.581183 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 339.023 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.22284 -37.69825 -36.26990 -35.90131 -35.66087 -34.14104 -32.91927 -32.23752 -31.05364 -29.91536 -28.80894 -26.55507 -23.67472 -23.40544 -22.51830 -21.26813 -18.99236 -18.47447 -17.78975 -16.74072 -16.49922 -16.02310 -15.66611 -15.00965 -14.98449 -14.81095 -14.42810 -14.02792 -13.77275 -13.48496 -13.24899 -12.94718 -12.50207 -12.46186 -12.12128 -11.97308 -11.67358 -11.21651 -11.02978 -10.63982 -10.49236 -10.39224 -10.22429 -10.13778 -10.03283 -9.68709 -9.53183 -9.40050 -9.34998 -9.17499 -8.31863 -8.28240 -7.60565 -6.24105 -3.65833 1.08385 1.50183 1.95334 2.38772 2.75043 2.99758 3.13683 3.25879 3.30022 3.49898 3.55608 4.00303 4.14242 4.66923 4.70919 4.77525 4.89097 5.05568 5.15504 5.20851 5.32450 5.58705 5.60317 5.78356 6.03544 6.18410 6.26170 6.28232 6.51361 6.62537 6.73502 7.01276 7.06361 7.49115 7.66577 8.14911 8.29436 8.32550 8.93358 9.33160 10.59241 Molecular weight = 339.02amu Principal moments of inertia in cm(-1) A = 0.012752 B = 0.008052 C = 0.006700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2195.147325 B = 3476.592554 C = 4178.159803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.176 4.176 3 C 0.227 3.773 4 N -0.851 5.851 5 C -0.294 4.294 6 H 0.098 0.902 7 C 0.013 3.987 8 N -0.821 5.821 9 Si 0.880 3.120 10 H -0.270 1.270 11 H -0.286 1.286 12 H -0.280 1.280 13 S 2.705 3.295 14 O -0.917 6.917 15 O -1.014 7.014 16 C -0.682 4.682 17 C 0.209 3.791 18 N -0.580 5.580 19 H 0.419 0.581 20 C 0.289 3.711 21 N -0.496 5.496 22 C 0.131 3.869 23 C -0.194 4.194 24 C 0.047 3.953 25 Cl -0.034 7.034 26 C -0.073 4.073 27 H 0.211 0.789 28 H 0.088 0.912 29 H 0.095 0.905 30 H 0.269 0.731 31 H 0.199 0.801 32 H 0.166 0.834 33 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.067 -1.161 -3.752 8.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.179 4.179 3 C 0.100 3.900 4 N -0.681 5.681 5 C -0.425 4.425 6 H 0.116 0.884 7 C -0.193 4.193 8 N -0.462 5.462 9 Si 0.707 3.293 10 H -0.194 1.194 11 H -0.212 1.212 12 H -0.205 1.205 13 S 2.793 3.207 14 O -0.906 6.906 15 O -1.004 7.004 16 C -0.770 4.770 17 C 0.078 3.922 18 N -0.186 5.186 19 H 0.257 0.743 20 C 0.056 3.944 21 N -0.210 5.210 22 C -0.034 4.034 23 C -0.216 4.216 24 C 0.011 3.989 25 Cl -0.004 7.004 26 C -0.082 4.082 27 H 0.228 0.772 28 H 0.106 0.894 29 H 0.113 0.887 30 H 0.080 0.920 31 H 0.216 0.784 32 H 0.183 0.817 33 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 7.321 -2.103 -2.867 8.139 hybrid contribution 0.552 1.410 0.446 1.578 sum 7.873 -0.693 -2.421 8.266 Atomic orbital electron populations 1.24713 0.95725 1.02836 1.01085 1.24227 0.95452 0.98822 0.99371 1.18054 0.82999 1.03005 0.85907 1.53109 1.73328 1.23529 1.18146 1.18820 1.41471 0.86239 0.96000 0.88399 1.25078 0.99317 0.98919 0.95974 1.70838 1.38053 1.33405 1.03886 0.86550 0.82316 0.81641 0.78801 1.19422 1.21248 1.20533 1.02029 0.74085 0.71899 0.72680 1.93594 1.59830 1.83653 1.53501 1.93429 1.87860 1.61735 1.57332 1.32530 1.20715 1.21567 1.02231 1.21917 0.81509 0.91712 0.97059 1.41884 1.08607 1.59591 1.08495 0.74312 1.18268 0.89466 1.00217 0.86494 1.66414 1.17806 1.15497 1.21240 1.22296 0.99289 0.96021 0.85839 1.21756 0.91464 1.06482 1.01935 1.20780 0.90796 0.98410 0.88864 1.98406 1.52982 1.96225 1.52810 1.18895 0.93915 1.03639 0.91715 0.77207 0.89422 0.88685 0.91956 0.78417 0.81742 0.83678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -4.17 19.25 29.55 0.57 -3.60 16 2 C -0.18 -3.68 13.64 -37.12 -0.51 -4.19 16 3 C 0.23 4.74 4.17 -6.82 -0.03 4.71 16 4 N -0.85 -20.22 2.18 -62.77 -0.14 -20.35 16 5 C -0.29 -7.30 9.49 -15.06 -0.14 -7.45 16 6 H 0.10 2.39 8.06 -52.49 -0.42 1.97 16 7 C 0.01 0.31 3.47 -17.43 -0.06 0.25 16 8 N -0.82 -20.69 6.86 55.49 0.38 -20.31 16 9 Si 0.88 19.98 29.70 -169.99 -5.05 14.94 16 10 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 11 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 13 S 2.70 66.04 4.40 -107.50 -0.47 65.57 16 14 O -0.92 -24.77 14.73 -57.17 -0.84 -25.62 16 15 O -1.01 -24.98 15.04 -57.17 -0.86 -25.84 16 16 C -0.68 -15.00 4.20 -37.72 -0.16 -15.16 16 17 C 0.21 4.01 9.55 -16.69 -0.16 3.85 16 18 N -0.58 -9.90 6.05 -12.15 -0.07 -9.97 16 19 H 0.42 5.50 8.96 -40.82 -0.37 5.13 16 20 C 0.29 5.54 8.43 -155.69 -1.31 4.22 16 21 N -0.50 -8.66 10.39 -12.29 -0.13 -8.79 16 22 C 0.13 1.90 11.14 -17.51 -0.20 1.70 16 23 C -0.19 -2.92 9.93 -39.40 -0.39 -3.31 16 24 C 0.05 0.88 6.40 -38.95 -0.25 0.63 16 25 Cl -0.03 -0.62 22.43 -51.86 -1.16 -1.78 16 26 C -0.07 -1.53 6.24 -105.09 -0.66 -2.18 16 27 H 0.21 2.94 7.80 -54.09 -0.42 2.52 16 28 H 0.09 1.63 8.07 -51.93 -0.42 1.21 16 29 H 0.10 1.92 5.51 -51.93 -0.29 1.63 16 30 H 0.27 6.31 8.14 -40.82 -0.33 5.98 16 31 H 0.20 3.45 7.59 -52.49 -0.40 3.05 16 32 H 0.17 1.65 8.06 -52.49 -0.42 1.23 16 33 H 0.15 1.66 8.06 -52.49 -0.42 1.24 16 LS Contribution 309.27 15.07 4.66 4.66 Total: -1.00 -32.64 309.27 -9.26 -41.91 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -2.29 Total: 6.10 kcal Atomic # 6 Polarization: -17.23 SS G_CDS: -3.29 Total: -20.52 kcal Atomic # 7 Polarization: -59.46 SS G_CDS: 0.04 Total: -59.41 kcal Atomic # 8 Polarization: -49.75 SS G_CDS: -1.70 Total: -51.45 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.05 Total: 14.94 kcal Atomic # 16 Polarization: 66.04 SS G_CDS: -0.47 Total: 65.57 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -1.16 Total: -1.78 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -32.64 -9.26 -41.91 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490986911.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.586 kcal (2) G-P(sol) polarization free energy of solvation -32.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds