Wall clock time and date at job start Tue Mar 31 2020 22:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47136 * 271.71786 * 3 2 1 5 5 C 1.36939 * 119.99912 * 275.00475 * 4 3 2 6 6 H 1.08000 * 120.00447 * 0.88701 * 5 4 3 7 7 C 1.38812 * 119.99480 * 180.89010 * 5 4 3 8 8 N 1.31617 * 120.00435 * 318.98886 * 7 5 4 9 9 Si 1.86798 * 119.99827 * 138.99594 * 7 5 4 10 10 H 1.48499 * 109.47398 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47389 * 119.99505 * 9 7 5 12 12 H 1.48497 * 109.47426 * 239.99768 * 9 7 5 13 13 S 1.65593 * 119.99898 * 95.00311 * 4 3 2 14 14 O 1.42100 * 106.40420 * 243.74287 * 13 4 3 15 15 O 1.42101 * 106.40405 * 16.65943 * 13 4 3 16 16 C 1.76196 * 107.21814 * 130.20272 * 13 4 3 17 17 C 1.34224 * 126.57204 * 122.22842 * 16 13 4 18 18 N 1.36939 * 109.89886 * 180.02562 * 17 16 13 19 19 H 0.96999 * 124.98519 * 179.97438 * 18 17 16 20 20 C 1.37415 * 110.02027 * 359.97438 * 18 17 16 21 21 N 1.32691 * 133.16778 * 179.97438 * 20 18 17 22 22 C 1.31606 * 121.70404 * 180.02562 * 21 20 18 23 23 C 1.38618 * 121.58895 * 0.02562 * 22 21 20 24 24 C 1.38353 * 119.39024 * 359.97438 * 23 22 21 25 25 Cl 1.73608 * 120.98848 * 180.02562 * 24 23 22 26 26 C 1.39816 * 118.02237 * 359.70313 * 24 23 22 27 27 H 4.40644 * 5.51404 * 180.02562 * 4 1 2 28 28 H 1.09006 * 109.46659 * 151.72071 * 3 2 1 29 29 H 1.08997 * 109.47279 * 31.71985 * 3 2 1 30 30 H 0.96999 * 120.00109 * 188.75931 * 8 7 5 31 31 H 1.08000 * 125.04786 * 359.97438 * 17 16 13 32 32 H 1.07999 * 119.20622 * 179.97438 * 22 21 20 33 33 H 1.07998 * 120.30200 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1344 -0.0405 1.3806 5 6 3.2646 1.1200 2.0957 6 1 2.9937 2.0642 1.6469 7 6 3.7448 1.0828 3.3976 8 7 3.3513 0.1312 4.2173 9 14 4.9494 2.3835 3.9863 10 1 5.2310 3.3340 2.8807 11 1 4.3615 3.1193 5.1344 12 1 6.2137 1.7310 4.4116 13 16 3.5289 -1.4905 2.0764 14 8 2.6256 -1.6759 3.1575 15 8 3.6685 -2.4216 1.0120 16 6 5.1291 -1.3079 2.7908 17 6 5.4565 -1.4984 4.0785 18 7 6.7932 -1.2622 4.2594 19 1 7.2614 -1.3356 5.1058 20 6 7.3738 -0.9062 3.0659 21 7 8.6137 -0.5843 2.7199 22 6 8.9271 -0.2730 1.4802 23 6 7.9767 -0.2649 0.4712 24 6 6.6661 -0.5919 0.7702 25 17 5.4424 -0.5958 -0.4613 26 6 6.3577 -0.9258 2.0925 27 1 -1.0500 -0.0002 0.0000 28 1 3.0089 0.9059 -0.4869 29 1 3.0098 -0.8733 -0.5403 30 1 3.5836 0.1747 5.1581 31 1 4.7679 -1.7933 4.8565 32 1 9.9492 -0.0169 1.2435 33 1 8.2568 -0.0058 -0.5392 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490986911.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:06 Heat of formation + Delta-G solvation = 79.029683 kcal Electronic energy + Delta-G solvation = -26211.552441 eV Core-core repulsion = 22394.032392 eV Total energy + Delta-G solvation = -3817.520049 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 339.023 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -42.59564 -39.02823 -37.75819 -37.63965 -37.41509 -36.09821 -34.58029 -33.63875 -32.73252 -31.26077 -30.22405 -28.25405 -25.43429 -24.77347 -23.82605 -22.84650 -20.80493 -19.86474 -19.32248 -18.46793 -17.84850 -17.60478 -17.22191 -16.65749 -16.62515 -16.38238 -15.86024 -15.69394 -15.31231 -15.07917 -14.85866 -14.21595 -14.12868 -13.93742 -13.81827 -13.41470 -13.13102 -13.03478 -12.76025 -12.52215 -12.28183 -12.12297 -11.93876 -11.81252 -11.77692 -11.33626 -11.16308 -11.00249 -10.91321 -10.58588 -10.03860 -9.60006 -9.17091 -8.08074 -5.53927 -0.28347 0.16913 0.23556 1.03811 1.20989 1.33028 1.42305 1.49731 1.67176 1.91584 2.00800 2.34129 2.69656 2.88309 2.95718 3.33171 3.50526 3.60135 3.71591 3.84478 3.89904 4.28642 4.30661 4.41031 4.46325 4.68213 4.82906 4.97774 5.03997 5.16680 5.26926 5.33583 5.66394 5.79182 6.23445 6.44740 6.79978 6.86675 7.11558 7.49219 8.77777 Molecular weight = 339.02amu Principal moments of inertia in cm(-1) A = 0.012752 B = 0.008052 C = 0.006700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2195.147325 B = 3476.592554 C = 4178.159803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.237 4.237 3 C 0.225 3.775 4 N -0.860 5.860 5 C -0.313 4.313 6 H 0.094 0.906 7 C -0.008 4.008 8 N -0.845 5.845 9 Si 0.923 3.077 10 H -0.273 1.273 11 H -0.288 1.288 12 H -0.279 1.279 13 S 2.717 3.283 14 O -0.956 6.956 15 O -1.027 7.027 16 C -0.711 4.711 17 C 0.219 3.781 18 N -0.564 5.564 19 H 0.437 0.563 20 C 0.274 3.726 21 N -0.504 5.504 22 C 0.142 3.858 23 C -0.178 4.178 24 C 0.019 3.981 25 Cl -0.042 7.042 26 C -0.105 4.105 27 H 0.253 0.747 28 H 0.102 0.898 29 H 0.095 0.905 30 H 0.273 0.727 31 H 0.209 0.791 32 H 0.218 0.782 33 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.032 -0.462 -4.215 9.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.239 4.239 3 C 0.099 3.901 4 N -0.690 5.690 5 C -0.443 4.443 6 H 0.112 0.888 7 C -0.212 4.212 8 N -0.487 5.487 9 Si 0.750 3.250 10 H -0.198 1.198 11 H -0.215 1.215 12 H -0.205 1.205 13 S 2.809 3.191 14 O -0.945 6.945 15 O -1.016 7.016 16 C -0.805 4.805 17 C 0.086 3.914 18 N -0.172 5.172 19 H 0.278 0.722 20 C 0.041 3.959 21 N -0.218 5.218 22 C -0.023 4.023 23 C -0.200 4.200 24 C -0.016 4.016 25 Cl -0.012 7.012 26 C -0.113 4.113 27 H 0.269 0.731 28 H 0.120 0.880 29 H 0.113 0.887 30 H 0.084 0.916 31 H 0.226 0.774 32 H 0.235 0.765 33 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 9.261 -1.387 -3.331 9.939 hybrid contribution 0.023 1.168 0.501 1.271 sum 9.284 -0.218 -2.830 9.708 Atomic orbital electron populations 1.25740 0.96746 1.00437 0.98534 1.24612 0.96387 1.01138 1.01761 1.18157 0.83465 1.03689 0.84786 1.52961 1.74674 1.22432 1.18955 1.18887 1.42445 0.86346 0.96661 0.88786 1.25424 0.99565 1.00184 0.96016 1.70872 1.39034 1.34555 1.04199 0.85901 0.80948 0.80086 0.78053 1.19787 1.21454 1.20523 1.00811 0.74439 0.71758 0.72093 1.93546 1.61736 1.84444 1.54762 1.93404 1.88329 1.62281 1.57630 1.31910 1.19772 1.25022 1.03778 1.22015 0.82475 0.90466 0.96443 1.41800 1.07841 1.58455 1.09086 0.72214 1.18482 0.89898 1.00945 0.86588 1.66584 1.16624 1.15856 1.22708 1.23278 1.01316 0.93195 0.84539 1.22290 0.89751 1.03855 1.04055 1.21190 0.92211 0.99835 0.88394 1.98396 1.53726 1.96352 1.52775 1.19115 0.93749 1.05289 0.93120 0.73117 0.87981 0.88705 0.91586 0.77439 0.76541 0.79811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 51. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -7.05 19.25 74.32 1.43 -5.62 16 2 C -0.24 -9.94 13.64 31.13 0.42 -9.52 16 3 C 0.23 9.59 4.17 84.58 0.35 9.94 16 4 N -0.86 -41.60 2.18 -352.49 -0.77 -42.37 16 5 C -0.31 -15.81 9.49 84.03 0.80 -15.01 16 6 H 0.09 4.69 8.06 -2.91 -0.02 4.67 16 7 C -0.01 -0.39 3.47 84.86 0.29 -0.10 16 8 N -0.85 -43.15 6.86 21.65 0.15 -43.00 16 9 Si 0.92 40.90 29.70 68.60 2.04 42.93 16 10 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 11 H -0.29 -12.69 7.11 99.48 0.71 -11.99 16 12 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 13 S 2.72 135.74 4.40 -56.49 -0.25 135.49 16 14 O -0.96 -53.20 14.73 -128.00 -1.89 -55.08 16 15 O -1.03 -51.90 15.04 -128.00 -1.93 -53.82 16 16 C -0.71 -31.48 4.20 23.48 0.10 -31.38 16 17 C 0.22 8.38 9.55 82.98 0.79 9.17 16 18 N -0.56 -18.57 6.05 -192.35 -1.16 -19.74 16 19 H 0.44 10.73 8.96 -92.71 -0.83 9.90 16 20 C 0.27 10.00 8.43 133.90 1.13 11.12 16 21 N -0.50 -15.98 10.39 -192.79 -2.00 -17.99 16 22 C 0.14 3.49 11.14 84.82 0.95 4.44 16 23 C -0.18 -4.73 9.93 22.39 0.22 -4.51 16 24 C 0.02 0.69 6.40 22.68 0.15 0.83 16 25 Cl -0.04 -1.52 22.43 -2.72 -0.06 -1.58 16 26 C -0.10 -4.27 6.24 -20.16 -0.13 -4.40 16 27 H 0.25 6.30 7.80 -4.42 -0.03 6.26 16 28 H 0.10 3.90 8.07 -2.38 -0.02 3.88 16 29 H 0.10 3.94 5.51 -2.39 -0.01 3.93 16 30 H 0.27 12.93 8.14 -92.71 -0.76 12.18 16 31 H 0.21 7.31 7.59 -2.91 -0.02 7.29 16 32 H 0.22 2.96 8.06 -2.91 -0.02 2.94 16 33 H 0.18 3.34 8.06 -2.91 -0.02 3.32 16 Total: -1.00 -71.77 309.27 1.01 -70.75 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: 0.38 Total: 19.42 kcal Atomic # 6 Polarization: -41.53 SS G_CDS: 6.51 Total: -35.03 kcal Atomic # 7 Polarization: -119.30 SS G_CDS: -3.79 Total: -123.09 kcal Atomic # 8 Polarization: -105.09 SS G_CDS: -3.81 Total: -108.90 kcal Atomic # 14 Polarization: 40.90 SS G_CDS: 2.04 Total: 42.93 kcal Atomic # 16 Polarization: 135.74 SS G_CDS: -0.25 Total: 135.49 kcal Atomic # 17 Polarization: -1.52 SS G_CDS: -0.06 Total: -1.58 kcal Total: -71.77 1.01 -70.75 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490986911.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.783 kcal (2) G-P(sol) polarization free energy of solvation -71.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds