Wall clock time and date at job start Tue Mar 31 2020 22:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46502 * 109.46862 * 245.56367 * 3 2 1 5 5 C 1.36895 * 119.99900 * 264.50986 * 4 3 2 6 6 H 1.07997 * 120.00465 * 199.09084 * 5 4 3 7 7 C 1.39037 * 120.00003 * 19.08679 * 5 4 3 8 8 N 1.31375 * 120.00019 * 22.27155 * 7 5 4 9 9 Si 1.86798 * 119.99978 * 202.27184 * 7 5 4 10 10 H 1.48502 * 109.47295 * 60.00197 * 9 7 5 11 11 H 1.48504 * 109.47055 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47406 * 300.00397 * 9 7 5 13 13 C 1.34771 * 119.99901 * 84.51176 * 4 3 2 14 14 O 1.21618 * 119.99594 * 179.97438 * 13 4 3 15 15 C 1.47518 * 120.00245 * 359.97438 * 13 4 3 16 16 C 1.39953 * 120.18329 * 90.29763 * 15 13 4 17 17 F 1.35109 * 120.10372 * 359.97438 * 16 15 13 18 18 C 1.38221 * 119.78762 * 180.25474 * 16 15 13 19 19 C 1.38302 * 120.15224 * 359.44663 * 18 16 15 20 20 C 1.38378 * 120.36293 * 0.27943 * 19 18 16 21 21 C 1.50702 * 119.88632 * 180.02562 * 20 19 18 22 22 C 1.38009 * 120.21946 * 359.97438 * 20 19 18 23 23 Br 1.89096 * 120.08054 * 180.02562 * 22 20 19 24 24 H 4.40637 * 5.51443 * 179.97438 * 4 1 2 25 25 H 1.09004 * 109.46820 * 125.56595 * 3 2 1 26 26 H 1.09000 * 109.47246 * 5.56576 * 3 2 1 27 27 H 0.96994 * 120.00036 * 179.97438 * 8 7 5 28 28 H 1.08007 * 119.92478 * 179.72493 * 18 16 15 29 29 H 1.07996 * 119.81393 * 180.25512 * 19 18 16 30 30 H 1.08997 * 109.46927 * 90.00616 * 21 20 19 31 31 H 1.09004 * 109.46997 * 209.99841 * 21 20 19 32 32 H 1.08996 * 109.47678 * 329.99864 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1340 0.5723 1.2575 5 6 3.4685 1.8981 1.3224 6 1 4.1028 2.2567 2.1195 7 6 2.9916 2.7832 0.3620 8 7 1.9126 2.4868 -0.3264 9 14 3.8850 4.3938 0.0506 10 1 5.2776 4.1120 -0.3814 11 1 3.1803 5.1531 -1.0135 12 1 3.9072 5.1972 1.2993 13 6 3.2537 -0.2072 2.3504 14 8 3.6593 0.2673 3.3942 15 6 2.8928 -1.6358 2.2806 16 6 3.8574 -2.5893 1.9356 17 9 5.1239 -2.2045 1.6643 18 6 3.5090 -3.9251 1.8675 19 6 2.2144 -4.3207 2.1504 20 6 1.2569 -3.3839 2.4978 21 6 -0.1505 -3.8269 2.8045 22 6 1.5869 -2.0456 2.5653 23 35 0.2756 -0.7689 3.0412 24 1 -1.0501 0.0001 -0.0002 25 1 3.0090 0.5986 -0.8360 26 1 3.0098 -1.0220 -0.0997 27 1 1.5797 3.1044 -0.9961 28 1 4.2507 -4.6623 1.5971 29 1 1.9491 -5.3663 2.0996 30 1 -0.2390 -4.0446 3.8689 31 1 -0.8478 -3.0330 2.5369 32 1 -0.3827 -4.7234 2.2297 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491014107.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:23 Heat of formation + Delta-G solvation = 23.547760 kcal Electronic energy + Delta-G solvation = -21665.862002 eV Core-core repulsion = 18168.835557 eV Total energy + Delta-G solvation = -3497.026445 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 339.001 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.62091 -39.54161 -37.96293 -35.14479 -32.70724 -32.37813 -31.55879 -31.16527 -29.31432 -26.53787 -26.42070 -25.13478 -23.05293 -21.62983 -19.37617 -17.88240 -17.29287 -16.78132 -16.56163 -16.17660 -15.36471 -14.97628 -14.34740 -14.19086 -13.92642 -13.77441 -13.72339 -13.33754 -12.90275 -12.36420 -12.24921 -12.02551 -11.86162 -11.80179 -11.55722 -11.12604 -10.99422 -10.65823 -10.49435 -10.36225 -9.66424 -9.26174 -9.12461 -8.88436 -8.78010 -8.34078 -8.28455 -7.88341 -6.35852 -3.88183 1.07550 1.14240 1.94354 3.14954 3.24401 3.27753 3.45887 3.59025 3.89949 4.13022 4.20141 4.36002 4.67102 4.74641 4.92345 5.11003 5.12222 5.30097 5.51792 5.58653 5.61945 5.67149 5.85235 6.08768 6.10850 6.17098 6.29312 6.35214 6.69424 6.83103 7.07331 7.53646 7.98026 8.37592 8.92655 9.06366 9.28515 9.82496 10.63456 Molecular weight = 339.00amu Principal moments of inertia in cm(-1) A = 0.015571 B = 0.006620 C = 0.005515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.795461 B = 4228.274977 C = 5075.945736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.116 4.116 3 C 0.233 3.767 4 N -0.414 5.414 5 C -0.317 4.317 6 H 0.106 0.894 7 C 0.037 3.963 8 N -0.849 5.849 9 Si 0.921 3.079 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.272 1.272 13 C 0.483 3.517 14 O -0.564 6.564 15 C -0.092 4.092 16 C 0.115 3.885 17 F -0.127 7.127 18 C -0.142 4.142 19 C -0.090 4.090 20 C -0.075 4.075 21 C -0.120 4.120 22 C -0.037 4.037 23 Br -0.013 7.013 24 H 0.196 0.804 25 H 0.107 0.893 26 H 0.055 0.945 27 H 0.270 0.730 28 H 0.141 0.859 29 H 0.139 0.861 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.834 -13.385 0.579 14.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C -0.118 4.118 3 C 0.110 3.890 4 N -0.130 5.130 5 C -0.444 4.444 6 H 0.123 0.877 7 C -0.169 4.169 8 N -0.485 5.485 9 Si 0.747 3.253 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.197 1.197 13 C 0.270 3.730 14 O -0.448 6.448 15 C -0.098 4.098 16 C 0.094 3.906 17 F -0.105 7.105 18 C -0.162 4.162 19 C -0.108 4.108 20 C -0.078 4.078 21 C -0.177 4.177 22 C -0.118 4.118 23 Br 0.074 6.926 24 H 0.213 0.787 25 H 0.125 0.875 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.159 0.841 29 H 0.156 0.844 30 H 0.095 0.905 31 H 0.097 0.903 32 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.179 -12.497 1.091 13.571 hybrid contribution 0.603 0.647 -0.497 1.014 sum -4.576 -11.850 0.594 12.716 Atomic orbital electron populations 1.24017 0.95068 1.05705 1.01357 1.22778 0.93962 0.95780 0.99250 1.18172 0.84982 0.96175 0.89660 1.43534 1.54174 1.08945 1.06338 1.19601 1.29010 0.82133 1.13685 0.87673 1.25329 0.94857 0.99408 0.97324 1.70092 1.17403 1.37497 1.23546 0.86079 0.79625 0.81255 0.78293 1.19765 1.20973 1.19740 1.17453 0.86395 0.84432 0.84763 1.90657 1.51038 1.73993 1.29113 1.20349 0.92331 0.96721 1.00427 1.17654 0.79500 0.92303 1.01148 1.91540 1.36028 1.91911 1.91014 1.21106 0.98061 0.93851 1.03151 1.20828 0.91565 0.99360 0.99096 1.19744 0.97368 0.91023 0.99629 1.20953 0.91941 1.02451 1.02336 1.21656 0.92850 0.93406 1.03931 1.96751 1.50282 1.54853 1.90671 0.78709 0.87485 0.92729 0.91952 0.84124 0.84364 0.90540 0.90292 0.90988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -4.95 17.40 29.55 0.51 -4.43 16 2 C -0.12 -2.59 9.84 -37.12 -0.37 -2.96 16 3 C 0.23 5.36 4.91 -6.83 -0.03 5.33 16 4 N -0.41 -10.70 2.59 -119.12 -0.31 -11.01 16 5 C -0.32 -8.77 9.28 -14.99 -0.14 -8.91 16 6 H 0.11 3.06 7.41 -52.49 -0.39 2.67 16 7 C 0.04 0.95 4.83 -17.45 -0.08 0.87 16 8 N -0.85 -21.96 9.56 55.50 0.53 -21.43 16 9 Si 0.92 20.37 29.61 -169.99 -5.03 15.34 16 10 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 11 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 12 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 13 C 0.48 12.36 5.52 -12.48 -0.07 12.29 16 14 O -0.56 -16.42 16.77 5.26 0.09 -16.33 16 15 C -0.09 -1.93 3.89 -104.89 -0.41 -2.34 16 16 C 0.11 2.10 6.88 -38.95 -0.27 1.83 16 17 F -0.13 -2.46 16.83 2.25 0.04 -2.43 16 18 C -0.14 -1.94 10.01 -39.56 -0.40 -2.33 16 19 C -0.09 -1.09 9.68 -39.51 -0.38 -1.47 16 20 C -0.08 -1.08 5.88 -104.65 -0.61 -1.69 16 21 C -0.12 -1.32 9.54 36.01 0.34 -0.97 16 22 C -0.04 -0.69 5.81 -39.08 -0.23 -0.92 16 23 Br -0.01 -0.24 27.81 -68.01 -1.89 -2.13 16 24 H 0.20 3.33 7.80 -54.08 -0.42 2.91 16 25 H 0.11 2.54 6.61 -51.93 -0.34 2.20 16 26 H 0.05 1.13 6.78 -51.93 -0.35 0.78 16 27 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 28 H 0.14 1.45 8.06 -52.48 -0.42 1.03 16 29 H 0.14 1.14 8.06 -52.49 -0.42 0.71 16 30 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.08 0.93 6.63 -51.93 -0.34 0.59 16 32 H 0.07 0.61 8.08 -51.93 -0.42 0.19 16 LS Contribution 303.84 15.07 4.58 4.58 Total: -1.00 -31.59 303.84 -6.80 -38.39 By element: Atomic # 1 Polarization: 3.40 SS G_CDS: -2.67 Total: 0.73 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: -2.13 Total: -5.71 kcal Atomic # 7 Polarization: -32.66 SS G_CDS: 0.22 Total: -32.44 kcal Atomic # 8 Polarization: -16.42 SS G_CDS: 0.09 Total: -16.33 kcal Atomic # 9 Polarization: -2.46 SS G_CDS: 0.04 Total: -2.43 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.03 Total: 15.34 kcal Atomic # 35 Polarization: -0.24 SS G_CDS: -1.89 Total: -2.13 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.59 -6.80 -38.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491014107.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.936 kcal (2) G-P(sol) polarization free energy of solvation -31.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds