Wall clock time and date at job start Tue Mar 31 2020 22:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46502 * 109.46862 * 245.56367 * 3 2 1 5 5 C 1.36895 * 119.99900 * 264.50986 * 4 3 2 6 6 H 1.07997 * 120.00465 * 199.09084 * 5 4 3 7 7 C 1.39037 * 120.00003 * 19.08679 * 5 4 3 8 8 N 1.31375 * 120.00019 * 22.27155 * 7 5 4 9 9 Si 1.86798 * 119.99978 * 202.27184 * 7 5 4 10 10 H 1.48502 * 109.47295 * 60.00197 * 9 7 5 11 11 H 1.48504 * 109.47055 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47406 * 300.00397 * 9 7 5 13 13 C 1.34771 * 119.99901 * 84.51176 * 4 3 2 14 14 O 1.21618 * 119.99594 * 179.97438 * 13 4 3 15 15 C 1.47518 * 120.00245 * 359.97438 * 13 4 3 16 16 C 1.39953 * 120.18329 * 90.29763 * 15 13 4 17 17 F 1.35109 * 120.10372 * 359.97438 * 16 15 13 18 18 C 1.38221 * 119.78762 * 180.25474 * 16 15 13 19 19 C 1.38302 * 120.15224 * 359.44663 * 18 16 15 20 20 C 1.38378 * 120.36293 * 0.27943 * 19 18 16 21 21 C 1.50702 * 119.88632 * 180.02562 * 20 19 18 22 22 C 1.38009 * 120.21946 * 359.97438 * 20 19 18 23 23 Br 1.89096 * 120.08054 * 180.02562 * 22 20 19 24 24 H 4.40637 * 5.51443 * 179.97438 * 4 1 2 25 25 H 1.09004 * 109.46820 * 125.56595 * 3 2 1 26 26 H 1.09000 * 109.47246 * 5.56576 * 3 2 1 27 27 H 0.96994 * 120.00036 * 179.97438 * 8 7 5 28 28 H 1.08007 * 119.92478 * 179.72493 * 18 16 15 29 29 H 1.07996 * 119.81393 * 180.25512 * 19 18 16 30 30 H 1.08997 * 109.46927 * 90.00616 * 21 20 19 31 31 H 1.09004 * 109.46997 * 209.99841 * 21 20 19 32 32 H 1.08996 * 109.47678 * 329.99864 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1340 0.5723 1.2575 5 6 3.4685 1.8981 1.3224 6 1 4.1028 2.2567 2.1195 7 6 2.9916 2.7832 0.3620 8 7 1.9126 2.4868 -0.3264 9 14 3.8850 4.3938 0.0506 10 1 5.2776 4.1120 -0.3814 11 1 3.1803 5.1531 -1.0135 12 1 3.9072 5.1972 1.2993 13 6 3.2537 -0.2072 2.3504 14 8 3.6593 0.2673 3.3942 15 6 2.8928 -1.6358 2.2806 16 6 3.8574 -2.5893 1.9356 17 9 5.1239 -2.2045 1.6643 18 6 3.5090 -3.9251 1.8675 19 6 2.2144 -4.3207 2.1504 20 6 1.2569 -3.3839 2.4978 21 6 -0.1505 -3.8269 2.8045 22 6 1.5869 -2.0456 2.5653 23 35 0.2756 -0.7689 3.0412 24 1 -1.0501 0.0001 -0.0002 25 1 3.0090 0.5986 -0.8360 26 1 3.0098 -1.0220 -0.0997 27 1 1.5797 3.1044 -0.9961 28 1 4.2507 -4.6623 1.5971 29 1 1.9491 -5.3663 2.0996 30 1 -0.2390 -4.0446 3.8689 31 1 -0.8478 -3.0330 2.5369 32 1 -0.3827 -4.7234 2.2297 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491014107.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:22 Heat of formation + Delta-G solvation = 5.034355 kcal Electronic energy + Delta-G solvation = -21666.664803 eV Core-core repulsion = 18168.835557 eV Total energy + Delta-G solvation = -3497.829246 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 339.001 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -50.03027 -41.08008 -39.52867 -37.11534 -34.17800 -33.85366 -33.06439 -32.92789 -30.65073 -28.31480 -27.54365 -26.95541 -24.54905 -22.87492 -21.03035 -19.72879 -18.75367 -18.46372 -18.00306 -17.79461 -16.88586 -16.70419 -16.07492 -15.64803 -15.48179 -15.08424 -14.81031 -14.68837 -14.55323 -14.06994 -14.06529 -13.58496 -13.07967 -12.99603 -12.93961 -12.76076 -12.54487 -12.35120 -12.17722 -11.94434 -11.21513 -11.08101 -10.80708 -10.65226 -10.46178 -9.92086 -9.78178 -9.54358 -8.35681 -5.97532 -0.16661 -0.07961 0.60486 1.33326 1.40706 1.50392 1.75538 2.11187 2.31401 2.34234 2.47754 2.96843 3.01977 3.14553 3.68188 3.79619 3.87680 3.93808 4.07284 4.33445 4.53668 4.61903 4.79308 4.82533 4.84971 4.89861 5.02677 5.25270 5.30013 5.43013 5.43992 5.70769 5.97348 6.36628 7.05037 7.24060 7.30748 7.86618 8.61556 Molecular weight = 339.00amu Principal moments of inertia in cm(-1) A = 0.015571 B = 0.006620 C = 0.005515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.795461 B = 4228.274977 C = 5075.945736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.153 4.153 3 C 0.240 3.760 4 N -0.422 5.422 5 C -0.360 4.360 6 H 0.074 0.926 7 C 0.012 3.988 8 N -0.855 5.855 9 Si 0.983 3.017 10 H -0.267 1.267 11 H -0.268 1.268 12 H -0.279 1.279 13 C 0.478 3.522 14 O -0.621 6.621 15 C -0.130 4.130 16 C 0.087 3.913 17 F -0.145 7.145 18 C -0.121 4.121 19 C -0.064 4.064 20 C -0.068 4.068 21 C -0.120 4.120 22 C -0.057 4.057 23 Br -0.035 7.035 24 H 0.227 0.773 25 H 0.091 0.909 26 H 0.071 0.929 27 H 0.275 0.725 28 H 0.183 0.817 29 H 0.197 0.803 30 H 0.090 0.910 31 H 0.066 0.934 32 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.254 -16.352 -0.582 17.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.154 4.154 3 C 0.118 3.882 4 N -0.137 5.137 5 C -0.487 4.487 6 H 0.092 0.908 7 C -0.194 4.194 8 N -0.490 5.490 9 Si 0.807 3.193 10 H -0.192 1.192 11 H -0.192 1.192 12 H -0.205 1.205 13 C 0.267 3.733 14 O -0.509 6.509 15 C -0.136 4.136 16 C 0.066 3.934 17 F -0.123 7.123 18 C -0.140 4.140 19 C -0.083 4.083 20 C -0.070 4.070 21 C -0.176 4.176 22 C -0.138 4.138 23 Br 0.052 6.948 24 H 0.244 0.756 25 H 0.109 0.891 26 H 0.089 0.911 27 H 0.085 0.915 28 H 0.200 0.800 29 H 0.214 0.786 30 H 0.109 0.891 31 H 0.085 0.915 32 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -6.621 -15.485 -0.110 16.841 hybrid contribution 0.974 1.452 -0.134 1.753 sum -5.647 -14.033 -0.245 15.129 Atomic orbital electron populations 1.24711 0.95735 1.03861 0.99396 1.22782 0.94159 0.97458 1.01014 1.18084 0.85917 0.96436 0.87806 1.43684 1.53989 1.08537 1.07507 1.19486 1.30754 0.83898 1.14526 0.90848 1.25996 0.95097 1.02027 0.96248 1.70165 1.17382 1.38379 1.23081 0.85166 0.78797 0.77352 0.78011 1.19236 1.19233 1.20477 1.18134 0.84875 0.86533 0.83737 1.90581 1.53363 1.75943 1.31022 1.20039 0.94558 0.94179 1.04820 1.18068 0.78501 0.93905 1.02917 1.91487 1.37077 1.92351 1.91408 1.21602 0.99743 0.92019 1.00636 1.21520 0.89894 1.01499 0.95349 1.20283 0.99702 0.89332 0.97676 1.21072 0.89217 1.03497 1.03858 1.21805 0.91511 0.94851 1.05624 1.96694 1.50631 1.56579 1.90945 0.75633 0.89070 0.91135 0.91459 0.80016 0.78564 0.89114 0.91480 0.87260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -8.69 17.40 74.32 1.29 -7.39 16 2 C -0.15 -6.84 9.84 31.13 0.31 -6.54 16 3 C 0.24 11.39 4.91 84.57 0.42 11.81 16 4 N -0.42 -23.01 2.59 -649.04 -1.68 -24.70 16 5 C -0.36 -21.08 9.28 84.09 0.78 -20.30 16 6 H 0.07 4.65 7.41 -2.91 -0.02 4.63 16 7 C 0.01 0.64 4.83 84.95 0.41 1.05 16 8 N -0.86 -44.71 9.56 21.68 0.21 -44.50 16 9 Si 0.98 42.71 29.61 68.60 2.03 44.74 16 10 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 11 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 12 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 13 C 0.48 25.91 5.52 86.69 0.48 26.39 16 14 O -0.62 -38.93 16.77 -4.09 -0.07 -39.00 16 15 C -0.13 -5.57 3.89 -20.04 -0.08 -5.65 16 16 C 0.09 3.13 6.88 22.68 0.16 3.29 16 17 F -0.14 -5.79 16.83 44.97 0.76 -5.03 16 18 C -0.12 -2.82 10.01 22.28 0.22 -2.59 16 19 C -0.06 -1.20 9.68 22.32 0.22 -0.98 16 20 C -0.07 -1.69 5.88 -19.88 -0.12 -1.81 16 21 C -0.12 -2.10 9.54 71.24 0.68 -1.42 16 22 C -0.06 -2.08 5.81 22.59 0.13 -1.94 16 23 Br -0.04 -1.35 27.81 -20.37 -0.57 -1.92 16 24 H 0.23 7.18 7.80 -4.41 -0.03 7.15 16 25 H 0.09 4.50 6.61 -2.39 -0.02 4.48 16 26 H 0.07 3.02 6.78 -2.39 -0.02 3.01 16 27 H 0.28 13.54 8.31 -92.71 -0.77 12.77 16 28 H 0.18 2.73 8.06 -2.91 -0.02 2.70 16 29 H 0.20 1.51 8.06 -2.91 -0.02 1.49 16 30 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.07 1.38 6.63 -2.39 -0.02 1.37 16 32 H 0.11 1.13 8.08 -2.39 -0.02 1.11 16 Total: -1.00 -75.65 303.84 6.74 -68.91 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: 1.16 Total: 7.59 kcal Atomic # 6 Polarization: -10.99 SS G_CDS: 4.90 Total: -6.09 kcal Atomic # 7 Polarization: -67.72 SS G_CDS: -1.47 Total: -69.20 kcal Atomic # 8 Polarization: -38.93 SS G_CDS: -0.07 Total: -39.00 kcal Atomic # 9 Polarization: -5.79 SS G_CDS: 0.76 Total: -5.03 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Atomic # 35 Polarization: -1.35 SS G_CDS: -0.57 Total: -1.92 kcal Total: -75.65 6.74 -68.91 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491014107.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.944 kcal (2) G-P(sol) polarization free energy of solvation -75.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds