Wall clock time and date at job start Tue Mar 31 2020 21:59:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 C 1.53008 * 109.47249 * 2 1
4 4 N 1.46904 * 109.47210 * 119.99685 * 2 1 3
5 5 C 1.46954 * 111.00238 * 175.00418 * 4 2 1
6 6 C 1.53050 * 109.36407 * 183.19210 * 5 4 2
7 7 N 1.46959 * 109.36138 * 301.59238 * 6 5 4
8 8 C 1.46897 * 111.00029 * 183.19060 * 7 6 5
9 9 H 1.09001 * 110.91569 * 297.54832 * 8 7 6
10 10 C 1.55166 * 111.00373 * 173.65100 * 8 7 6
11 11 C 1.54319 * 102.86193 * 206.22798 * 10 8 7
12 12 N 1.47022 * 107.27315 * 22.52534 * 11 10 8
13 13 C 1.34784 * 125.64434 * 180.96618 * 12 11 10
14 14 O 1.21588 * 119.99858 * 179.69170 * 13 12 11
15 15 N 1.34777 * 119.99964 * 359.69586 * 13 12 11
16 16 C 1.46496 * 119.99610 * 180.02562 * 15 13 12
17 17 C 1.52998 * 109.46847 * 179.97438 * 16 15 13
18 18 C 1.50706 * 109.47348 * 179.97438 * 17 16 15
19 19 H 1.08005 * 119.99758 * 359.97438 * 18 17 16
20 20 C 1.37871 * 120.00102 * 179.97438 * 18 17 16
21 21 N 1.31516 * 120.00217 * 0.02562 * 20 18 17
22 22 Si 1.86800 * 119.99766 * 179.97438 * 20 18 17
23 23 H 1.48501 * 109.47057 * 179.97438 * 22 20 18
24 24 H 1.48500 * 109.47389 * 300.00068 * 22 20 18
25 25 H 1.48504 * 109.47102 * 60.00417 * 22 20 18
26 26 C 1.47427 * 108.70654 * 0.70482 * 12 11 10
27 27 C 1.46963 * 110.88140 * 59.32125 * 7 6 5
28 28 C 1.46960 * 110.99524 * 298.80210 * 4 2 1
29 29 H 1.08997 * 109.47235 * 300.00852 * 1 2 3
30 30 H 1.09006 * 109.46980 * 60.00515 * 1 2 3
31 31 H 1.09000 * 109.47227 * 180.02562 * 1 2 3
32 32 H 1.08994 * 109.47512 * 239.99596 * 2 1 3
33 33 H 1.09006 * 109.46709 * 299.99651 * 3 2 1
34 34 H 1.08994 * 109.47193 * 59.99401 * 3 2 1
35 35 H 1.09000 * 109.46897 * 180.02562 * 3 2 1
36 36 H 1.08997 * 109.49085 * 63.21552 * 5 4 2
37 37 H 1.09004 * 109.48657 * 303.15148 * 5 4 2
38 38 H 1.09004 * 109.48751 * 181.63090 * 6 5 4
39 39 H 1.08997 * 109.49237 * 61.55543 * 6 5 4
40 40 H 1.09000 * 110.71677 * 324.78645 * 10 8 7
41 41 H 1.08998 * 110.71750 * 87.88406 * 10 8 7
42 42 H 1.08998 * 109.98487 * 263.05041 * 11 10 8
43 43 H 1.08994 * 109.77349 * 141.88586 * 11 10 8
44 44 H 0.96996 * 119.99887 * 359.97438 * 15 13 12
45 45 H 1.09000 * 109.47627 * 59.99917 * 16 15 13
46 46 H 1.09002 * 109.46983 * 299.99313 * 16 15 13
47 47 H 1.09001 * 109.47671 * 59.99931 * 17 16 15
48 48 H 1.09006 * 109.47297 * 299.99651 * 17 16 15
49 49 H 0.97001 * 119.99646 * 359.97438 * 21 20 18
50 50 H 1.08997 * 110.36573 * 94.94035 * 26 12 11
51 51 H 1.09005 * 110.36434 * 217.25781 * 26 12 11
52 52 H 1.08997 * 109.48346 * 60.64528 * 27 7 6
53 53 H 1.08990 * 109.48857 * 180.70861 * 27 7 6
54 54 H 1.08998 * 109.49033 * 296.77170 * 28 4 2
55 55 H 1.08992 * 109.49303 * 56.84290 * 28 4 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 7 2.0197 -0.6924 1.1995
5 6 3.4838 -0.8164 1.1753
6 6 3.9461 -1.6110 2.3989
7 7 3.4985 -0.9281 3.6208
8 6 3.9881 -1.6205 4.8203
9 1 3.5858 -2.6320 4.8772
10 6 3.6519 -0.8154 6.1034
11 6 4.7509 -1.2651 7.0890
12 7 5.8767 -1.7676 6.2879
13 6 7.0269 -2.2708 6.7783
14 8 7.8911 -2.6639 6.0187
15 7 7.2189 -2.3384 8.1106
16 6 8.4693 -2.8849 8.6435
17 6 8.4314 -2.8474 10.1726
18 6 9.7174 -3.4101 10.7210
19 1 10.4848 -3.7600 10.0463
20 6 9.9142 -3.4784 12.0839
21 7 8.9795 -3.0529 12.9054
22 14 11.5080 -4.1766 12.7635
23 1 11.4717 -4.1390 14.2476
24 1 11.6677 -5.5807 12.3072
25 1 12.6518 -3.3645 12.2761
26 6 5.5366 -1.6357 4.8594
27 6 2.0343 -0.8040 3.6451
28 6 1.5720 -0.0095 2.4214
29 1 -0.3633 0.5139 0.8899
30 1 -0.3633 0.5138 -0.8901
31 1 -0.3634 -1.0277 0.0005
32 1 1.8933 -0.5139 -0.8899
33 1 1.6767 1.9563 -0.8901
34 1 1.6766 1.9564 0.8899
35 1 3.1300 1.4425 -0.0005
36 1 3.9332 0.1764 1.1951
37 1 3.7897 -1.3363 0.2673
38 1 5.0340 -1.6793 2.3983
39 1 3.5183 -2.6129 2.3649
40 1 3.7140 0.2562 5.9136
41 1 2.6641 -1.0826 6.4786
42 1 4.3716 -2.0580 7.7335
43 1 5.0747 -0.4171 7.6923
44 1 6.5295 -2.0245 8.7165
45 1 9.3083 -2.2876 8.2865
46 1 8.5877 -3.9151 8.3079
47 1 7.5924 -3.4444 10.5301
48 1 8.3131 -1.8170 10.5080
49 1 8.1518 -2.6907 12.5525
50 1 5.9354 -0.7037 4.4590
51 1 5.9220 -2.4866 4.2976
52 1 1.5849 -1.7968 3.6251
53 1 1.7285 -0.2842 4.5530
54 1 1.9997 0.9924 2.4555
55 1 0.4842 0.0589 2.4220
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000542445143.mol2 55
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:59:49
Heat of formation + Delta-G solvation = -45.714464 kcal
Electronic energy + Delta-G solvation = -29854.323824 eV
Core-core repulsion = 25924.816562 eV
Total energy + Delta-G solvation = -3929.507262 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 338.242 amu
Computer time = 0.99 seconds
Orbital eigenvalues (eV)
-41.54075 -40.63093 -38.99800 -36.92453 -36.66664 -35.05238 -33.23305 -32.07481
-31.65222 -30.85330 -29.35513 -28.11916 -26.87359 -26.02202 -24.85285 -23.98659
-23.16335 -22.17614 -21.39789 -21.04871 -20.14777 -19.41517 -18.68379 -17.95532
-17.21838 -17.04274 -16.49443 -16.05384 -15.90087 -15.86178 -15.65733 -15.61239
-15.48835 -15.06372 -14.86545 -14.71916 -14.37754 -14.19980 -14.04275 -13.88812
-13.64718 -13.63592 -13.36632 -12.91258 -12.86759 -12.74131 -12.62552 -12.48474
-12.30060 -12.27144 -12.09720 -12.01178 -11.88854 -11.86800 -11.73658 -11.55401
-11.45586 -11.36778 -10.80936 -10.58359 -10.30008 -9.60235 -9.46167 -9.19188
-8.72221 -6.43105 1.45497 1.55640 1.62587 1.82638 2.00648 2.55445
2.75367 2.93388 2.99494 3.13412 3.38524 3.59596 3.85642 3.92182
4.01144 4.14483 4.19428 4.20909 4.26172 4.31395 4.32599 4.33011
4.37363 4.39194 4.49144 4.54922 4.55792 4.65481 4.71993 4.74967
4.78559 4.80833 4.84521 4.89605 4.92521 4.96468 5.01523 5.03435
5.06100 5.12015 5.16552 5.21508 5.31954 5.32494 5.39696 5.40351
5.89616 5.93248 5.95066 5.98521 6.13380 6.16590 6.21033 6.52764
6.88083 7.36285 7.43565 8.70153
Molecular weight = 338.24amu
Principal moments of inertia in cm(-1)
A = 0.040559 B = 0.001636 C = 0.001597
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 690.184668 B =17110.646620 C =17532.857757
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.141 4.141
2 C 0.075 3.925
3 C -0.182 4.182
4 N -0.543 5.543
5 C 0.061 3.939
6 C 0.055 3.945
7 N -0.529 5.529
8 C 0.080 3.920
9 H 0.057 0.943
10 C -0.105 4.105
11 C 0.092 3.908
12 N -0.637 5.637
13 C 0.714 3.286
14 O -0.639 6.639
15 N -0.731 5.731
16 C 0.167 3.833
17 C 0.009 3.991
18 C -0.624 4.624
19 H 0.050 0.950
20 C -0.031 4.031
21 N -0.931 5.931
22 Si 1.118 2.882
23 H -0.280 1.280
24 H -0.270 1.270
25 H -0.271 1.271
26 C 0.136 3.864
27 C 0.058 3.942
28 C 0.055 3.945
29 H 0.058 0.942
30 H 0.068 0.932
31 H 0.056 0.944
32 H 0.081 0.919
33 H 0.068 0.932
34 H 0.057 0.943
35 H 0.049 0.951
36 H 0.041 0.959
37 H 0.083 0.917
38 H 0.076 0.924
39 H 0.037 0.963
40 H 0.094 0.906
41 H 0.107 0.893
42 H 0.075 0.925
43 H 0.076 0.924
44 H 0.405 0.595
45 H 0.043 0.957
46 H 0.043 0.957
47 H 0.006 0.994
48 H 0.006 0.994
49 H 0.259 0.741
50 H 0.070 0.930
51 H 0.057 0.943
52 H 0.037 0.963
53 H 0.097 0.903
54 H 0.042 0.958
55 H 0.092 0.908
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -22.884 9.431 -25.134 35.276
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.198 4.198
2 C -0.033 4.033
3 C -0.241 4.241
4 N -0.268 5.268
5 C -0.067 4.067
6 C -0.074 4.074
7 N -0.254 5.254
8 C -0.029 4.029
9 H 0.075 0.925
10 C -0.143 4.143
11 C -0.030 4.030
12 N -0.375 5.375
13 C 0.416 3.584
14 O -0.521 6.521
15 N -0.386 5.386
16 C 0.043 3.957
17 C -0.029 4.029
18 C -0.662 4.662
19 H 0.068 0.932
20 C -0.229 4.229
21 N -0.568 5.568
22 Si 0.939 3.061
23 H -0.206 1.206
24 H -0.196 1.196
25 H -0.196 1.196
26 C 0.013 3.987
27 C -0.069 4.069
28 C -0.073 4.073
29 H 0.077 0.923
30 H 0.087 0.913
31 H 0.076 0.924
32 H 0.099 0.901
33 H 0.087 0.913
34 H 0.076 0.924
35 H 0.068 0.932
36 H 0.059 0.941
37 H 0.102 0.898
38 H 0.095 0.905
39 H 0.055 0.945
40 H 0.113 0.887
41 H 0.125 0.875
42 H 0.094 0.906
43 H 0.095 0.905
44 H 0.241 0.759
45 H 0.062 0.938
46 H 0.062 0.938
47 H 0.025 0.975
48 H 0.025 0.975
49 H 0.068 0.932
50 H 0.088 0.912
51 H 0.076 0.924
52 H 0.055 0.945
53 H 0.115 0.885
54 H 0.060 0.940
55 H 0.111 0.889
Dipole moment (debyes) X Y Z Total
from point charges -21.396 8.776 -24.253 33.512
hybrid contribution -0.834 0.384 -1.110 1.441
sum -22.231 9.161 -25.363 34.948
Atomic orbital electron populations
1.21832 0.93463 1.02220 1.02325 1.21733 0.96377 0.92517 0.92716
1.22421 1.01082 0.97855 1.02694 1.62451 1.10498 1.51195 1.02607
1.22099 0.87788 0.99266 0.97590 1.22189 1.00143 0.95771 0.89255
1.62167 1.11924 1.50467 1.00845 1.22622 0.92562 0.96506 0.91210
0.92499 1.22640 0.98316 1.01435 0.91919 1.22281 0.86189 0.99479
0.95091 1.47471 1.15732 1.65672 1.08641 1.15643 0.81691 0.78583
0.82494 1.90858 1.45268 1.57379 1.58580 1.45193 1.21128 1.67560
1.04695 1.20938 0.83953 0.96690 0.94120 1.19292 0.97014 0.95942
0.90610 1.22303 1.03301 1.45736 0.94896 0.93165 1.27364 1.06261
0.95046 0.94220 1.70923 1.07717 1.40080 1.38082 0.82919 0.70973
0.76631 0.75610 1.20570 1.19562 1.19578 1.22003 0.95064 1.01362
0.80310 1.22230 0.85918 0.99692 0.99086 1.22233 1.00803 0.95761
0.88514 0.92289 0.91274 0.92438 0.90117 0.91286 0.92446 0.93195
0.94057 0.89844 0.90545 0.94511 0.88712 0.87497 0.90621 0.90520
0.75930 0.93842 0.93819 0.97529 0.97537 0.93198 0.91172 0.92433
0.94466 0.88520 0.93966 0.88938
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.14 9.00 71.98 0.65 -0.50 16
2 C 0.07 0.76 2.96 44.92 0.13 0.89 16
3 C -0.18 -1.74 8.49 71.98 0.61 -1.13 16
4 N -0.54 -6.86 4.70 -870.47 -4.09 -10.95 16
5 C 0.06 0.83 5.25 86.31 0.45 1.28 16
6 C 0.05 0.85 5.43 86.31 0.47 1.32 16
7 N -0.53 -7.89 4.61 -862.35 -3.97 -11.86 16
8 C 0.08 1.33 2.70 46.31 0.13 1.46 16
9 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16
10 C -0.11 -1.37 5.39 31.78 0.17 -1.20 16
11 C 0.09 1.73 6.14 86.73 0.53 2.26 16
12 N -0.64 -17.76 3.33 -829.76 -2.76 -20.52 16
13 C 0.71 27.12 8.49 179.05 1.52 28.64 16
14 O -0.64 -29.78 16.60 -3.99 -0.07 -29.85 16
15 N -0.73 -27.50 5.52 -478.54 -2.64 -30.14 16
16 C 0.17 7.63 5.61 86.38 0.48 8.11 16
17 C 0.01 0.46 4.40 29.85 0.13 0.59 16
18 C -0.62 -35.82 9.11 25.60 0.23 -35.59 16
19 H 0.05 2.85 7.74 -2.91 -0.02 2.83 16
20 C -0.03 -1.75 5.46 84.65 0.46 -1.29 16
21 N -0.93 -56.35 13.65 21.45 0.29 -56.06 16
22 Si 1.12 50.12 29.90 68.60 2.05 52.17 16
23 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16
24 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16
25 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16
26 C 0.14 3.24 5.32 86.85 0.46 3.71 16
27 C 0.06 0.69 5.45 86.31 0.47 1.16 16
28 C 0.05 0.61 4.81 86.31 0.42 1.03 16
29 H 0.06 0.45 6.36 -2.39 -0.02 0.44 16
30 H 0.07 0.43 8.14 -2.38 -0.02 0.41 16
31 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16
32 H 0.08 0.83 8.11 -2.39 -0.02 0.81 16
33 H 0.07 0.54 8.14 -2.38 -0.02 0.52 16
34 H 0.06 0.58 6.46 -2.39 -0.02 0.57 16
35 H 0.05 0.56 6.59 -2.39 -0.02 0.55 16
36 H 0.04 0.61 6.60 -2.39 -0.02 0.60 16
37 H 0.08 1.04 8.12 -2.38 -0.02 1.02 16
38 H 0.08 1.29 6.97 -2.38 -0.02 1.27 16
39 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16
40 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16
41 H 0.11 0.90 8.02 -2.39 -0.02 0.89 16
42 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16
43 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16
44 H 0.41 12.98 7.46 -92.71 -0.69 12.29 16
45 H 0.04 2.08 8.14 -2.39 -0.02 2.06 16
46 H 0.04 2.09 8.14 -2.39 -0.02 2.07 16
47 H 0.01 0.34 8.01 -2.39 -0.02 0.32 16
48 H 0.01 0.33 8.01 -2.38 -0.02 0.31 16
49 H 0.26 15.59 7.22 -92.71 -0.67 14.92 16
50 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16
51 H 0.06 1.56 7.83 -2.38 -0.02 1.54 16
52 H 0.04 0.50 8.14 -2.39 -0.02 0.48 16
53 H 0.10 0.86 7.06 -2.39 -0.02 0.84 16
54 H 0.04 0.53 6.46 -2.39 -0.02 0.51 16
55 H 0.09 0.84 6.17 -2.39 -0.01 0.83 16
Total: -1.00 -72.15 414.55 -3.60 -75.75
By element:
Atomic # 1 Polarization: 20.44 SS G_CDS: 0.26 Total: 20.71 kcal
Atomic # 6 Polarization: 3.43 SS G_CDS: 7.32 Total: 10.75 kcal
Atomic # 7 Polarization: -116.36 SS G_CDS: -13.17 Total: -129.53 kcal
Atomic # 8 Polarization: -29.78 SS G_CDS: -0.07 Total: -29.85 kcal
Atomic # 14 Polarization: 50.12 SS G_CDS: 2.05 Total: 52.17 kcal
Total: -72.15 -3.60 -75.75 kcal
The number of atoms in the molecule is 55
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000542445143.mol2 55
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 30.037 kcal
(2) G-P(sol) polarization free energy of solvation -72.151 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.114 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.600 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.751 kcal
(6) G-S(sol) free energy of system = (1) + (5) -45.714 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.99 seconds