Wall clock time and date at job start Tue Mar 31 2020 21:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.46926 * 2 1 4 4 H 1.08997 * 109.47058 * 56.21892 * 3 2 1 5 5 C 1.52991 * 109.47587 * 296.21660 * 3 2 1 6 6 N 1.46904 * 109.46993 * 176.21632 * 3 2 1 7 7 C 1.46901 * 111.00102 * 182.10258 * 6 3 2 8 8 C 1.53237 * 109.33686 * 187.25341 * 7 6 3 9 9 N 1.47077 * 108.52663 * 306.16996 * 8 7 6 10 10 C 1.34776 * 120.88464 * 230.91502 * 9 8 7 11 11 O 1.21585 * 120.00443 * 175.29056 * 10 9 8 12 12 N 1.34781 * 119.99597 * 355.29233 * 10 9 8 13 13 C 1.46501 * 119.99506 * 184.69359 * 12 10 9 14 14 C 1.53038 * 109.45822 * 275.02226 * 13 12 10 15 15 C 1.53196 * 109.31133 * 178.60304 * 14 13 12 16 16 N 1.46931 * 108.76551 * 54.65760 * 15 14 13 17 17 C 1.36941 * 120.62875 * 126.35866 * 16 15 14 18 18 H 1.07996 * 119.99517 * 206.43576 * 17 16 15 19 19 C 1.38809 * 120.00112 * 26.44376 * 17 16 15 20 20 N 1.31624 * 120.00161 * 17.16884 * 19 17 16 21 21 Si 1.86799 * 120.00061 * 197.17514 * 19 17 16 22 22 H 1.48495 * 109.47491 * 94.98245 * 21 19 17 23 23 H 1.48499 * 109.46815 * 214.98709 * 21 19 17 24 24 H 1.48505 * 109.46889 * 334.98052 * 21 19 17 25 25 C 1.46926 * 118.73623 * 306.38739 * 16 15 14 26 26 C 1.53045 * 109.45988 * 154.97448 * 13 12 10 27 27 C 1.47085 * 118.23721 * 51.18283 * 9 8 7 28 28 C 1.46899 * 111.00198 * 306.40490 * 6 3 2 29 29 H 1.09001 * 109.47384 * 180.39533 * 1 2 3 30 30 H 1.09001 * 109.46978 * 300.39161 * 1 2 3 31 31 H 1.09003 * 109.47416 * 60.38714 * 1 2 3 32 32 H 1.09005 * 109.46633 * 240.00322 * 2 1 3 33 33 H 1.08997 * 109.47382 * 120.00447 * 2 1 3 34 34 H 1.09001 * 109.47298 * 59.99919 * 5 3 2 35 35 H 1.09005 * 109.47677 * 180.02562 * 5 3 2 36 36 H 1.09007 * 109.47217 * 300.00148 * 5 3 2 37 37 H 1.08999 * 109.49343 * 67.29574 * 7 6 3 38 38 H 1.08997 * 109.51332 * 307.22375 * 7 6 3 39 39 H 1.09004 * 109.62610 * 186.45890 * 8 7 6 40 40 H 1.09008 * 109.63201 * 65.88095 * 8 7 6 41 41 H 0.96991 * 120.00432 * 4.69175 * 12 10 9 42 42 H 1.08998 * 109.46463 * 34.99553 * 13 12 10 43 43 H 1.08997 * 109.50272 * 298.56946 * 14 13 12 44 44 H 1.09000 * 109.49928 * 58.66833 * 14 13 12 45 45 H 1.08995 * 109.60095 * 294.87319 * 15 14 13 46 46 H 1.09005 * 109.70330 * 174.50323 * 15 14 13 47 47 H 0.96992 * 120.00110 * 179.97438 * 20 19 17 48 48 H 1.08997 * 109.58241 * 293.81485 * 25 16 15 49 49 H 1.08998 * 109.70081 * 173.46819 * 25 16 15 50 50 H 1.09004 * 109.49288 * 301.33501 * 26 13 12 51 51 H 1.08994 * 109.49902 * 61.42637 * 26 13 12 52 52 H 1.09000 * 109.62449 * 68.52676 * 27 9 8 53 53 H 1.08994 * 109.62739 * 189.10703 * 27 9 8 54 54 H 1.09007 * 109.49420 * 292.70530 * 28 6 3 55 55 H 1.08998 * 109.49136 * 52.75508 * 28 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6223 1.9755 0.8541 5 6 1.6092 2.1358 -1.2940 6 7 3.5061 1.4435 0.0914 7 6 4.0294 2.8152 0.1442 8 6 5.5587 2.7785 0.0561 9 7 6.0658 1.8788 1.1032 10 6 7.0371 2.2783 1.9479 11 8 7.3846 1.5544 2.8608 12 7 7.6232 3.4804 1.7805 13 6 8.7479 3.8720 2.6337 14 6 8.2147 4.4762 3.9347 15 6 9.3928 4.8524 4.8388 16 7 10.2995 5.7344 4.0913 17 6 10.6706 6.9491 4.6033 18 1 10.9561 7.7508 3.9385 19 6 10.6800 7.1497 5.9768 20 7 10.6679 6.1170 6.7929 21 14 10.7097 8.8852 6.6671 22 1 9.3229 9.3215 6.9694 23 1 11.5187 8.9088 7.9121 24 1 11.3114 9.8049 5.6683 25 6 10.7997 5.2888 2.7837 26 6 9.6059 4.9074 1.9029 27 6 5.4890 0.5293 1.2004 28 6 3.9624 0.6544 1.2434 29 1 -0.3634 -1.0276 0.0071 30 1 -0.3633 0.5199 0.8865 31 1 -0.3634 0.5078 -0.8934 32 1 1.8932 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 0.5213 2.1350 -1.3619 35 1 1.9729 3.1634 -1.2942 36 1 2.0268 1.6028 -2.1482 37 1 3.7302 3.2827 1.0823 38 1 3.6305 3.3894 -0.6919 39 1 5.9584 3.7810 0.2096 40 1 5.8604 2.4071 -0.9234 41 1 7.3004 4.0862 1.0953 42 1 9.3532 2.9948 2.8620 43 1 7.6299 5.3679 3.7090 44 1 7.5846 3.7465 4.4433 45 1 9.9259 3.9503 5.1390 46 1 9.0256 5.3716 5.7241 47 1 10.6748 6.2572 7.7526 48 1 11.4475 4.4223 2.9163 49 1 11.3603 6.0949 2.3105 50 1 9.9661 4.4846 0.9650 51 1 9.0079 5.7950 1.6964 52 1 5.7838 -0.0583 0.3309 53 1 5.8425 0.0446 2.1104 54 1 3.6641 1.1521 2.1663 55 1 3.5144 -0.3385 1.2045 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590925346.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:57:15 Heat of formation + Delta-G solvation = -15.637727 kcal Electronic energy + Delta-G solvation = -30767.406326 eV Core-core repulsion = 26839.203289 eV Total energy + Delta-G solvation = -3928.203037 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.61277 -40.02887 -38.98000 -36.84929 -36.07039 -34.20613 -33.60798 -32.44724 -31.68469 -31.03945 -30.08091 -27.86136 -26.68450 -25.47775 -24.18473 -23.90436 -23.50668 -22.48734 -21.20738 -20.91684 -20.38370 -19.27867 -18.63010 -17.52955 -17.03057 -16.76162 -16.55354 -16.02483 -15.94081 -15.79859 -15.59130 -15.35460 -15.33142 -15.13074 -14.76774 -14.61305 -14.27478 -14.04356 -14.02253 -13.63690 -13.47465 -13.19821 -13.01977 -12.87889 -12.70791 -12.62145 -12.60073 -12.47949 -12.37055 -12.23771 -12.09948 -12.02019 -11.92788 -11.80938 -11.57148 -11.54375 -11.42484 -11.23427 -11.08239 -10.58837 -10.16933 -9.65317 -9.25631 -8.73661 -7.86574 -5.32094 1.47321 1.48658 1.58118 1.58472 2.11576 2.51709 2.79375 2.90355 3.28885 3.66103 3.79947 3.83384 3.87995 3.95815 3.99324 4.09388 4.20896 4.27872 4.32902 4.34122 4.38278 4.45577 4.47283 4.55184 4.64052 4.67075 4.69646 4.73814 4.77038 4.80144 4.83567 4.87625 5.02031 5.02843 5.05381 5.08422 5.12386 5.13098 5.18418 5.21196 5.31519 5.41743 5.44776 5.47658 5.49607 5.59652 5.63864 5.70533 5.89090 6.02838 6.13133 6.38212 6.97097 7.12996 7.56192 7.84537 8.36716 9.20339 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.021453 B = 0.002119 C = 0.002081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.871043 B =13211.430593 C =13454.928335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.119 4.119 3 C 0.079 3.921 4 H 0.028 0.972 5 C -0.142 4.142 6 N -0.530 5.530 7 C 0.040 3.960 8 C 0.115 3.885 9 N -0.630 5.630 10 C 0.700 3.300 11 O -0.637 6.637 12 N -0.726 5.726 13 C 0.181 3.819 14 C -0.129 4.129 15 C 0.181 3.819 16 N -0.609 5.609 17 C -0.257 4.257 18 H 0.077 0.923 19 C -0.059 4.059 20 N -0.940 5.940 21 Si 0.971 3.029 22 H -0.288 1.288 23 H -0.298 1.298 24 H -0.262 1.262 25 C 0.141 3.859 26 C -0.120 4.120 27 C 0.134 3.866 28 C 0.044 3.956 29 H 0.060 0.940 30 H 0.048 0.952 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.061 0.939 34 H 0.070 0.930 35 H 0.058 0.942 36 H 0.065 0.935 37 H 0.022 0.978 38 H 0.113 0.887 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.407 0.593 42 H 0.053 0.947 43 H 0.058 0.942 44 H 0.039 0.961 45 H -0.013 1.013 46 H 0.058 0.942 47 H 0.248 0.752 48 H 0.012 0.988 49 H 0.070 0.930 50 H 0.092 0.908 51 H 0.075 0.925 52 H 0.085 0.915 53 H 0.073 0.927 54 H 0.018 0.982 55 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.496 -9.421 -21.765 31.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.157 4.157 3 C -0.029 4.029 4 H 0.046 0.954 5 C -0.199 4.199 6 N -0.256 5.256 7 C -0.089 4.089 8 C -0.007 4.007 9 N -0.368 5.368 10 C 0.402 3.598 11 O -0.518 6.518 12 N -0.382 5.382 13 C 0.076 3.924 14 C -0.169 4.169 15 C 0.055 3.945 16 N -0.333 5.333 17 C -0.387 4.387 18 H 0.094 0.906 19 C -0.254 4.254 20 N -0.587 5.587 21 Si 0.799 3.201 22 H -0.215 1.215 23 H -0.225 1.225 24 H -0.187 1.187 25 C 0.015 3.985 26 C -0.159 4.159 27 C 0.011 3.989 28 C -0.084 4.084 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.084 0.916 37 H 0.040 0.960 38 H 0.131 0.869 39 H 0.111 0.889 40 H 0.111 0.889 41 H 0.246 0.754 42 H 0.072 0.928 43 H 0.077 0.923 44 H 0.058 0.942 45 H 0.006 0.994 46 H 0.077 0.923 47 H 0.058 0.942 48 H 0.030 0.970 49 H 0.089 0.911 50 H 0.110 0.890 51 H 0.094 0.906 52 H 0.103 0.897 53 H 0.091 0.909 54 H 0.036 0.964 55 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -20.020 -10.138 -21.409 31.015 hybrid contribution -0.195 1.215 1.813 2.191 sum -20.215 -8.923 -19.596 29.534 Atomic orbital electron populations 1.21795 0.94760 1.02198 1.02060 1.21658 0.96335 0.95106 1.02595 1.21724 0.85917 0.97220 0.98044 0.95379 1.21894 1.01603 1.00164 0.96286 1.62049 1.10067 1.12576 1.40865 1.22564 0.94596 0.90158 1.01546 1.21934 0.93499 0.93938 0.91360 1.47406 1.38805 1.16376 1.34189 1.16107 0.79949 0.82052 0.81732 1.90891 1.68338 1.57021 1.35595 1.45278 1.36042 1.17013 1.39895 1.20515 0.86019 0.96539 0.89323 1.22299 0.98503 0.99044 0.97053 1.20504 0.88661 0.91463 0.93920 1.44375 1.52012 1.18236 1.18655 1.19620 1.39648 0.89201 0.90242 0.90573 1.25869 1.01615 1.00760 0.97132 1.70216 1.55843 1.30398 1.02215 0.85192 0.77213 0.80155 0.77558 1.21497 1.22537 1.18665 1.21044 0.94074 0.97494 0.85843 1.22135 0.97232 0.98009 0.98558 1.21582 0.92098 0.82385 1.02836 1.22530 0.94632 1.00068 0.91214 0.92059 0.93291 0.91648 0.90845 0.92072 0.91077 0.92304 0.91601 0.95977 0.86907 0.88937 0.88909 0.75414 0.92836 0.92302 0.94206 0.99449 0.92335 0.94248 0.96996 0.91110 0.88955 0.90593 0.89702 0.90856 0.96388 0.87396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.63 71.98 0.69 -0.61 16 2 C -0.12 -1.26 5.12 30.59 0.16 -1.10 16 3 C 0.08 0.96 2.16 44.91 0.10 1.05 16 4 H 0.03 0.42 8.14 -2.39 -0.02 0.40 16 5 C -0.14 -1.29 8.77 71.98 0.63 -0.65 16 6 N -0.53 -7.64 4.50 -870.05 -3.91 -11.56 16 7 C 0.04 0.56 5.43 86.38 0.47 1.03 16 8 C 0.12 1.73 6.54 86.35 0.56 2.29 16 9 N -0.63 -14.65 3.01 -835.93 -2.52 -17.17 16 10 C 0.70 22.35 8.27 179.05 1.48 23.83 16 11 O -0.64 -26.87 15.47 -3.98 -0.06 -26.93 16 12 N -0.73 -20.56 4.99 -457.67 -2.28 -22.84 16 13 C 0.18 6.44 2.38 45.02 0.11 6.55 16 14 C -0.13 -5.44 5.65 30.67 0.17 -5.26 16 15 C 0.18 9.44 5.33 86.36 0.46 9.90 16 16 N -0.61 -31.06 3.00 -699.11 -2.10 -33.16 16 17 C -0.26 -14.13 9.61 84.03 0.81 -13.33 16 18 H 0.08 3.97 7.88 -2.91 -0.02 3.95 16 19 C -0.06 -3.36 4.93 84.86 0.42 -2.94 16 20 N -0.94 -57.64 11.08 21.65 0.24 -57.40 16 21 Si 0.97 45.39 29.59 68.60 2.03 47.42 16 22 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 23 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 24 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 25 C 0.14 5.71 6.51 86.36 0.56 6.28 16 26 C -0.12 -3.73 5.55 30.67 0.17 -3.56 16 27 C 0.13 2.84 6.61 86.35 0.57 3.41 16 28 C 0.04 0.76 5.27 86.38 0.46 1.22 16 29 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.06 0.48 6.55 -2.39 -0.02 0.46 16 32 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 33 H 0.06 0.70 5.95 -2.39 -0.01 0.68 16 34 H 0.07 0.53 6.54 -2.39 -0.02 0.51 16 35 H 0.06 0.50 6.30 -2.38 -0.02 0.48 16 36 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 37 H 0.02 0.39 8.14 -2.39 -0.02 0.37 16 38 H 0.11 1.09 6.02 -2.39 -0.01 1.07 16 39 H 0.09 1.16 5.74 -2.39 -0.01 1.14 16 40 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 41 H 0.41 8.49 6.14 -92.72 -0.57 7.93 16 42 H 0.05 2.22 7.65 -2.39 -0.02 2.20 16 43 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 44 H 0.04 1.77 8.10 -2.39 -0.02 1.75 16 45 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 46 H 0.06 3.43 5.92 -2.38 -0.01 3.42 16 47 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 48 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 49 H 0.07 2.67 7.93 -2.39 -0.02 2.65 16 50 H 0.09 2.27 8.14 -2.38 -0.02 2.25 16 51 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 52 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 53 H 0.07 1.92 7.04 -2.39 -0.02 1.90 16 54 H 0.02 0.38 8.14 -2.38 -0.02 0.36 16 55 H 0.11 1.50 5.71 -2.39 -0.01 1.48 16 Total: -1.00 -73.61 406.47 -0.49 -74.10 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: 0.30 Total: 19.45 kcal Atomic # 6 Polarization: 20.27 SS G_CDS: 7.82 Total: 28.09 kcal Atomic # 7 Polarization: -131.56 SS G_CDS: -10.57 Total: -142.13 kcal Atomic # 8 Polarization: -26.87 SS G_CDS: -0.06 Total: -26.93 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -73.61 -0.49 -74.10 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590925346.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.457 kcal (2) G-P(sol) polarization free energy of solvation -73.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds