Wall clock time and date at job start Tue Mar 31 2020 21:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47028 * 2 1 4 4 H 1.09003 * 109.46720 * 56.69801 * 3 2 1 5 5 C 1.53001 * 109.46884 * 176.69359 * 3 2 1 6 6 N 1.46900 * 109.47073 * 296.69728 * 3 2 1 7 7 C 1.46894 * 110.99524 * 294.39718 * 6 3 2 8 8 C 1.53249 * 109.33551 * 172.74896 * 7 6 3 9 9 N 1.47073 * 108.51921 * 53.83277 * 8 7 6 10 10 C 1.34775 * 120.88133 * 128.83849 * 9 8 7 11 11 O 1.21592 * 120.00006 * 5.40138 * 10 9 8 12 12 N 1.34776 * 120.00104 * 185.39914 * 10 9 8 13 13 C 1.46498 * 120.00014 * 185.04686 * 12 10 9 14 14 C 1.53044 * 109.46038 * 275.02493 * 13 12 10 15 15 C 1.53196 * 109.31228 * 178.59958 * 14 13 12 16 16 N 1.46924 * 108.76298 * 54.65792 * 15 14 13 17 17 C 1.36938 * 120.62879 * 126.35901 * 16 15 14 18 18 H 1.08006 * 120.00204 * 326.60653 * 17 16 15 19 19 C 1.38813 * 119.99930 * 146.60198 * 17 16 15 20 20 N 1.31618 * 120.00119 * 351.22952 * 19 17 16 21 21 Si 1.86803 * 120.00131 * 171.22646 * 19 17 16 22 22 H 1.48497 * 109.47090 * 60.00116 * 21 19 17 23 23 H 1.48499 * 109.47514 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.46899 * 300.00576 * 21 19 17 25 25 C 1.46928 * 118.74125 * 306.37981 * 16 15 14 26 26 C 1.53041 * 109.46118 * 154.97267 * 13 12 10 27 27 C 1.47079 * 118.23863 * 308.80916 * 9 8 7 28 28 C 1.46897 * 110.99830 * 170.09964 * 6 3 2 29 29 H 1.08994 * 109.47620 * 305.12986 * 1 2 3 30 30 H 1.09002 * 109.46921 * 65.13745 * 1 2 3 31 31 H 1.09003 * 109.46946 * 185.12925 * 1 2 3 32 32 H 1.09000 * 109.47124 * 239.99519 * 2 1 3 33 33 H 1.09004 * 109.46807 * 120.00007 * 2 1 3 34 34 H 1.09003 * 109.47080 * 60.00663 * 5 3 2 35 35 H 1.09001 * 109.46833 * 180.02562 * 5 3 2 36 36 H 1.09000 * 109.47426 * 300.00085 * 5 3 2 37 37 H 1.09002 * 109.49478 * 52.79213 * 7 6 3 38 38 H 1.09005 * 109.52080 * 292.72004 * 7 6 3 39 39 H 1.08998 * 109.62569 * 173.54324 * 8 7 6 40 40 H 1.08998 * 109.62786 * 294.11834 * 8 7 6 41 41 H 0.96996 * 119.99940 * 5.04442 * 12 10 9 42 42 H 1.09001 * 109.46557 * 34.99794 * 13 12 10 43 43 H 1.08998 * 109.49580 * 298.56772 * 14 13 12 44 44 H 1.09000 * 109.49715 * 58.66354 * 14 13 12 45 45 H 1.09003 * 109.60095 * 294.86948 * 15 14 13 46 46 H 1.09005 * 109.69904 * 174.50940 * 15 14 13 47 47 H 0.97001 * 120.00220 * 179.97438 * 20 19 17 48 48 H 1.08999 * 109.58326 * 293.82736 * 25 16 15 49 49 H 1.08998 * 109.70051 * 173.46430 * 25 16 15 50 50 H 1.08999 * 109.49744 * 301.33307 * 26 13 12 51 51 H 1.08999 * 109.49773 * 61.43124 * 26 13 12 52 52 H 1.08996 * 109.63416 * 291.48304 * 27 9 8 53 53 H 1.09004 * 109.62532 * 170.89725 * 27 9 8 54 54 H 1.09000 * 109.49278 * 307.21289 * 28 6 3 55 55 H 1.08999 * 109.49535 * 67.29243 * 28 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6291 1.9731 0.8590 5 6 3.5678 1.4432 0.0832 6 7 1.6166 2.1115 -1.2373 7 6 2.2588 1.5041 -2.4105 8 6 1.6579 2.1047 -3.6859 9 7 1.7642 3.5695 -3.6074 10 6 2.3040 4.2790 -4.6182 11 8 2.6209 3.7212 -5.6511 12 7 2.4926 5.6067 -4.4840 13 6 2.9756 6.3964 -5.6195 14 6 4.5038 6.3322 -5.6719 15 6 5.0032 7.1301 -6.8806 16 7 4.4590 8.4927 -6.8050 17 6 5.2891 9.5800 -6.8671 18 1 6.2826 9.5256 -6.4468 19 6 4.8538 10.7521 -7.4701 20 7 3.7165 10.7683 -8.1324 21 14 5.8821 12.3063 -7.3418 22 1 7.2179 12.0672 -7.9449 23 1 5.2024 13.4108 -8.0651 24 1 6.0434 12.6765 -5.9127 25 6 3.0071 8.6666 -6.6611 26 6 2.5301 7.8512 -5.4551 27 6 1.2651 4.2396 -2.3970 28 6 1.8815 3.5550 -1.1725 29 1 -0.3634 0.5913 0.8404 30 1 -0.3633 0.4321 -0.9324 31 1 -0.3633 -1.0236 0.0919 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 3.9787 0.9127 -0.7758 35 1 3.9310 2.4709 0.0837 36 1 3.8819 0.9468 1.0013 37 1 2.0898 0.4273 -2.4009 38 1 3.3300 1.7044 -2.3838 39 1 2.2078 1.7436 -4.5549 40 1 0.6096 1.8174 -3.7672 41 1 2.3086 6.0394 -3.6357 42 1 2.5634 5.9926 -6.5443 43 1 4.9173 6.7588 -4.7581 44 1 4.8214 5.2937 -5.7654 45 1 4.6646 6.6518 -7.7997 46 1 6.0925 7.1705 -6.8696 47 1 3.4121 11.5874 -8.5535 48 1 2.5058 8.3135 -7.5623 49 1 2.7771 9.7204 -6.5038 50 1 1.4426 7.8940 -5.3943 51 1 2.9624 8.2633 -4.5433 52 1 0.1791 4.1576 -2.3544 53 1 1.5554 5.2901 -2.4141 54 1 1.4389 3.9656 -0.2649 55 1 2.9578 3.7272 -1.1628 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590925347.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:57:18 Heat of formation + Delta-G solvation = -18.318354 kcal Electronic energy + Delta-G solvation = -30965.016067 eV Core-core repulsion = 27036.696789 eV Total energy + Delta-G solvation = -3928.319278 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.62273 -40.10473 -38.97805 -36.74820 -36.04184 -34.06956 -33.36867 -32.27770 -31.66509 -31.03891 -30.45496 -27.73111 -26.72708 -24.93825 -24.57735 -23.92666 -23.60095 -22.59972 -21.18389 -21.04958 -20.09435 -19.13490 -18.54219 -17.49546 -17.02144 -16.84437 -16.49784 -16.06779 -15.88561 -15.70526 -15.52054 -15.34438 -15.09781 -14.83535 -14.73108 -14.65347 -14.42358 -14.11979 -14.04922 -13.78231 -13.32125 -13.18952 -13.10502 -12.90263 -12.76768 -12.65570 -12.58867 -12.44858 -12.20718 -12.12747 -12.04272 -12.02529 -11.89671 -11.87462 -11.59484 -11.53512 -11.42121 -11.33463 -11.08554 -10.56099 -10.17145 -9.62029 -9.15134 -8.62139 -7.87006 -5.40563 1.48690 1.50225 1.57426 1.59898 2.12702 2.51273 2.87629 2.91354 3.30417 3.67110 3.80865 3.84928 3.89588 4.00380 4.06709 4.15568 4.20834 4.23948 4.32371 4.33933 4.42475 4.46281 4.49266 4.57578 4.65085 4.67710 4.74785 4.76463 4.83150 4.84251 4.86127 4.87538 4.98611 5.01402 5.04614 5.06915 5.13476 5.16320 5.25877 5.26748 5.29080 5.41492 5.46854 5.50026 5.59514 5.60362 5.64691 5.71607 5.91187 6.08755 6.17332 6.42574 6.97772 7.16320 7.56495 7.82948 8.38853 9.19470 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.026805 B = 0.002114 C = 0.002080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.334473 B =13239.129650 C =13458.691616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.113 4.113 3 C 0.082 3.918 4 H 0.091 0.909 5 C -0.184 4.184 6 N -0.526 5.526 7 C 0.047 3.953 8 C 0.135 3.865 9 N -0.629 5.629 10 C 0.702 3.298 11 O -0.635 6.635 12 N -0.727 5.727 13 C 0.182 3.818 14 C -0.122 4.122 15 C 0.146 3.854 16 N -0.609 5.609 17 C -0.266 4.266 18 H 0.065 0.935 19 C -0.047 4.047 20 N -0.936 5.936 21 Si 0.972 3.028 22 H -0.278 1.278 23 H -0.294 1.294 24 H -0.274 1.274 25 C 0.182 3.818 26 C -0.127 4.127 27 C 0.115 3.885 28 C 0.043 3.957 29 H 0.051 0.949 30 H 0.054 0.946 31 H 0.049 0.951 32 H 0.059 0.941 33 H 0.072 0.928 34 H 0.050 0.950 35 H 0.048 0.952 36 H 0.070 0.930 37 H 0.101 0.899 38 H 0.029 0.971 39 H 0.073 0.927 40 H 0.078 0.922 41 H 0.406 0.594 42 H 0.053 0.947 43 H 0.063 0.937 44 H 0.054 0.946 45 H 0.006 0.994 46 H 0.056 0.944 47 H 0.251 0.749 48 H -0.006 1.006 49 H 0.064 0.936 50 H 0.077 0.923 51 H 0.070 0.930 52 H 0.087 0.913 53 H 0.091 0.909 54 H 0.107 0.893 55 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.400 -19.874 21.945 30.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.151 4.151 3 C -0.026 4.026 4 H 0.109 0.891 5 C -0.243 4.243 6 N -0.250 5.250 7 C -0.082 4.082 8 C 0.011 3.989 9 N -0.367 5.367 10 C 0.403 3.597 11 O -0.517 6.517 12 N -0.384 5.384 13 C 0.077 3.923 14 C -0.162 4.162 15 C 0.020 3.980 16 N -0.332 5.332 17 C -0.396 4.396 18 H 0.082 0.918 19 C -0.243 4.243 20 N -0.581 5.581 21 Si 0.800 3.200 22 H -0.203 1.203 23 H -0.220 1.220 24 H -0.199 1.199 25 C 0.055 3.945 26 C -0.167 4.167 27 C -0.008 4.008 28 C -0.086 4.086 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.091 0.909 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.089 0.911 37 H 0.119 0.881 38 H 0.047 0.953 39 H 0.091 0.909 40 H 0.097 0.903 41 H 0.244 0.756 42 H 0.071 0.929 43 H 0.082 0.918 44 H 0.073 0.927 45 H 0.024 0.976 46 H 0.075 0.925 47 H 0.061 0.939 48 H 0.012 0.988 49 H 0.082 0.918 50 H 0.095 0.905 51 H 0.088 0.912 52 H 0.105 0.895 53 H 0.109 0.891 54 H 0.125 0.875 55 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -7.771 -20.193 21.064 30.196 hybrid contribution 1.375 1.228 -0.201 1.854 sum -6.396 -18.965 20.863 28.911 Atomic orbital electron populations 1.21593 0.95074 1.00847 1.02061 1.21586 0.96783 0.94638 1.02107 1.21825 0.92862 0.95919 0.91968 0.89106 1.22448 0.97623 1.01655 1.02587 1.62173 1.57880 1.02604 1.02348 1.22467 0.95852 1.00208 0.89658 1.21572 1.01779 0.77614 0.97904 1.47384 1.63752 1.07591 1.17929 1.16071 0.78261 0.81988 0.83363 1.90879 1.59900 1.70698 1.30208 1.45310 1.71179 1.06038 1.15862 1.20485 0.93454 0.90378 0.87993 1.22161 0.95777 0.98905 0.99354 1.20957 0.97199 0.85296 0.94583 1.44268 1.03008 1.00815 1.85157 1.19440 0.98024 0.91594 1.30582 0.91763 1.26014 0.98878 1.02492 0.96892 1.70122 1.23333 1.27433 1.37211 0.85280 0.78117 0.78777 0.77834 1.20350 1.21961 1.19947 1.20540 0.83038 0.98507 0.92386 1.22273 1.00668 0.93232 1.00530 1.21922 1.00037 0.96363 0.82491 1.22497 0.98770 0.88518 0.98809 0.92949 0.92709 0.93199 0.92187 0.90916 0.93054 0.93298 0.91083 0.88072 0.95322 0.90872 0.90340 0.75570 0.92861 0.91811 0.92703 0.97632 0.92506 0.93942 0.98795 0.91813 0.90495 0.91182 0.89499 0.89117 0.87456 0.95054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 9.72 71.98 0.70 -0.65 16 2 C -0.11 -1.04 5.30 30.59 0.16 -0.87 16 3 C 0.08 0.83 2.33 44.91 0.10 0.94 16 4 H 0.09 0.82 7.97 -2.39 -0.02 0.80 16 5 C -0.18 -2.04 8.46 71.98 0.61 -1.43 16 6 N -0.53 -6.63 4.05 -870.01 -3.53 -10.15 16 7 C 0.05 0.72 4.66 86.39 0.40 1.12 16 8 C 0.13 2.72 6.58 86.35 0.57 3.29 16 9 N -0.63 -14.14 3.01 -835.94 -2.52 -16.66 16 10 C 0.70 21.72 8.26 179.06 1.48 23.20 16 11 O -0.64 -25.63 15.49 -4.01 -0.06 -25.70 16 12 N -0.73 -20.62 4.98 -457.68 -2.28 -22.90 16 13 C 0.18 6.50 2.38 45.02 0.11 6.60 16 14 C -0.12 -4.59 5.65 30.67 0.17 -4.42 16 15 C 0.15 6.56 6.52 86.36 0.56 7.12 16 16 N -0.61 -31.30 2.98 -699.06 -2.08 -33.39 16 17 C -0.27 -14.75 9.56 84.03 0.80 -13.94 16 18 H 0.06 3.46 7.84 -2.91 -0.02 3.44 16 19 C -0.05 -2.63 5.08 84.86 0.43 -2.20 16 20 N -0.94 -55.34 11.10 21.65 0.24 -55.10 16 21 Si 0.97 44.64 29.56 68.60 2.03 46.66 16 22 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 23 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 24 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 25 C 0.18 8.79 5.23 86.36 0.45 9.24 16 26 C -0.13 -4.61 5.55 30.67 0.17 -4.44 16 27 C 0.11 1.69 6.61 86.35 0.57 2.26 16 28 C 0.04 0.53 5.25 86.38 0.45 0.98 16 29 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.05 0.66 7.85 -2.39 -0.02 0.65 16 31 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.06 0.60 6.26 -2.39 -0.01 0.58 16 33 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.05 0.66 6.50 -2.39 -0.02 0.65 16 35 H 0.05 0.62 6.85 -2.39 -0.02 0.60 16 36 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.10 1.29 6.10 -2.39 -0.01 1.27 16 38 H 0.03 0.53 6.67 -2.38 -0.02 0.51 16 39 H 0.07 1.82 7.10 -2.39 -0.02 1.80 16 40 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.41 8.84 6.13 -92.71 -0.57 8.27 16 42 H 0.05 2.22 7.65 -2.39 -0.02 2.20 16 43 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 44 H 0.05 2.08 8.09 -2.39 -0.02 2.06 16 45 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 46 H 0.06 2.48 7.93 -2.38 -0.02 2.47 16 47 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 48 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 49 H 0.06 3.42 6.21 -2.39 -0.01 3.41 16 50 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 51 H 0.07 2.40 8.14 -2.39 -0.02 2.39 16 52 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 53 H 0.09 1.15 5.63 -2.39 -0.01 1.14 16 54 H 0.11 0.90 7.99 -2.39 -0.02 0.88 16 55 H 0.03 0.47 6.94 -2.39 -0.02 0.45 16 Total: -1.00 -69.69 407.20 -0.15 -69.84 By element: Atomic # 1 Polarization: 20.27 SS G_CDS: 0.29 Total: 20.57 kcal Atomic # 6 Polarization: 19.07 SS G_CDS: 7.75 Total: 26.82 kcal Atomic # 7 Polarization: -128.03 SS G_CDS: -10.16 Total: -138.19 kcal Atomic # 8 Polarization: -25.63 SS G_CDS: -0.06 Total: -25.70 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.66 kcal Total: -69.69 -0.15 -69.84 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590925347.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.525 kcal (2) G-P(sol) polarization free energy of solvation -69.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds