Wall clock time and date at job start Tue Mar 31 2020 21:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47356 * 2 1 4 4 C 1.53005 * 109.46904 * 239.99992 * 2 1 3 5 5 H 1.08999 * 109.46975 * 65.93913 * 4 2 1 6 6 C 1.53000 * 109.46952 * 185.93023 * 4 2 1 7 7 N 1.46894 * 109.47613 * 293.14908 * 6 4 2 8 8 C 1.46900 * 110.99951 * 179.97438 * 7 6 4 9 9 C 1.53007 * 109.47209 * 179.97438 * 8 7 6 10 10 H 1.09002 * 109.46859 * 59.99565 * 9 8 7 11 11 O 1.42899 * 109.46824 * 299.99712 * 9 8 7 12 12 C 1.52993 * 109.47316 * 179.97438 * 9 8 7 13 13 N 1.46901 * 109.47247 * 184.99770 * 12 9 8 14 14 C 1.46900 * 110.99777 * 66.04689 * 13 12 9 15 15 C 1.46899 * 111.00185 * 190.00208 * 13 12 9 16 16 C 1.50694 * 109.47226 * 170.00243 * 15 13 12 17 17 H 1.08005 * 119.99994 * 359.97438 * 16 15 13 18 18 C 1.37878 * 120.00062 * 180.02562 * 16 15 13 19 19 N 1.31513 * 119.99861 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00174 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.47270 * 89.99470 * 20 18 16 22 22 H 1.48495 * 109.47179 * 209.99456 * 20 18 16 23 23 H 1.48501 * 109.47009 * 329.99720 * 20 18 16 24 24 C 1.50696 * 109.47317 * 305.93630 * 4 2 1 25 25 C 1.35310 * 126.12860 * 324.68643 * 24 4 2 26 26 C 1.39867 * 107.92513 * 179.90430 * 25 24 4 27 27 N 1.30843 * 108.19528 * 0.36803 * 26 25 24 28 28 N 1.34945 * 126.12452 * 145.00020 * 24 4 2 29 29 C 1.46498 * 126.04141 * 359.97438 * 28 24 4 30 30 H 1.09001 * 109.47306 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47061 * 299.99901 * 1 2 3 32 32 H 1.09004 * 109.47037 * 59.99411 * 1 2 3 33 33 H 1.08994 * 109.47053 * 120.00648 * 2 1 3 34 34 H 1.09007 * 109.47071 * 50.92021 * 3 2 1 35 35 H 1.09005 * 109.47374 * 170.91053 * 3 2 1 36 36 H 1.08992 * 109.47523 * 290.92053 * 3 2 1 37 37 H 1.09009 * 109.46844 * 53.14837 * 6 4 2 38 38 H 1.08997 * 109.47067 * 173.14097 * 6 4 2 39 39 H 1.00903 * 110.99996 * 303.95040 * 7 6 4 40 40 H 1.09001 * 109.47075 * 299.99686 * 8 7 6 41 41 H 1.09002 * 109.47565 * 59.99953 * 8 7 6 42 42 H 0.96698 * 114.00388 * 300.00185 * 11 9 8 43 43 H 1.09003 * 109.47427 * 305.00074 * 12 9 8 44 44 H 1.09005 * 109.47274 * 64.99752 * 12 9 8 45 45 H 1.08994 * 109.47051 * 60.00159 * 14 13 12 46 46 H 1.09001 * 109.46736 * 180.02562 * 14 13 12 47 47 H 1.09003 * 109.47316 * 300.00028 * 14 13 12 48 48 H 1.09005 * 109.47053 * 290.00193 * 15 13 12 49 49 H 1.09000 * 109.47054 * 49.99823 * 15 13 12 50 50 H 0.97005 * 119.99866 * 180.02562 * 19 18 16 51 51 H 1.08000 * 126.03707 * 0.03802 * 25 24 4 52 52 H 1.07997 * 125.90778 * 180.13990 * 26 25 24 53 53 H 1.08995 * 109.47250 * 89.99593 * 29 28 24 54 54 H 1.08994 * 109.47444 * 210.00131 * 29 28 24 55 55 H 1.09001 * 109.47264 * 330.00046 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 1 1.7660 -0.1497 -2.1361 6 6 3.5627 -0.8516 -1.1770 7 7 4.1732 0.4812 -1.2686 8 6 5.6382 0.3949 -1.2019 9 6 6.2369 1.7995 -1.3008 10 1 5.8708 2.4095 -0.4750 11 8 5.8509 2.3955 -2.5409 12 6 7.7626 1.7097 -1.2307 13 7 8.3322 3.0636 -1.2051 14 6 7.9661 3.7654 0.0324 15 6 9.7906 3.0245 -1.3765 16 6 10.3088 4.4232 -1.5909 17 1 9.6233 5.2577 -1.5994 18 6 11.6581 4.6375 -1.7772 19 7 12.4928 3.6212 -1.7673 20 14 12.3005 6.3712 -2.0437 21 1 12.6375 6.9813 -0.7323 22 1 13.5166 6.3232 -2.8944 23 1 11.2579 7.1875 -2.7160 24 6 1.4212 -2.0933 -1.3250 25 6 1.1312 -2.8967 -0.2755 26 6 0.5687 -4.0746 -0.7777 27 7 0.5299 -3.9850 -2.0825 28 7 1.0626 -2.7432 -2.4519 29 6 1.2054 -2.2393 -3.8201 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.5504 2.0010 0.7978 35 1 3.1179 1.4467 0.1624 36 1 1.8153 1.9074 -0.9598 37 1 3.8431 -1.3155 -0.2313 38 1 3.9140 -1.4698 -2.0031 39 1 3.8766 0.9580 -2.1070 40 1 5.9326 -0.0601 -0.2561 41 1 6.0043 -0.2147 -2.0279 42 1 6.1436 1.9049 -3.3211 43 1 8.0540 1.1758 -0.3261 44 1 8.1357 1.1750 -2.1042 45 1 8.3452 3.2105 0.8905 46 1 8.4003 4.7652 0.0250 47 1 6.8808 3.8415 0.0995 48 1 10.2501 2.5996 -0.4841 49 1 10.0384 2.4087 -2.2411 50 1 13.4421 3.7720 -1.8981 51 1 1.3018 -2.6677 0.7661 52 1 0.2288 -4.9147 -0.1904 53 1 2.1775 -2.5332 -4.2159 54 1 0.4169 -2.6577 -4.4456 55 1 1.1281 -1.1521 -3.8168 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591763437.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:53:52 Heat of formation + Delta-G solvation = 3.464406 kcal Electronic energy + Delta-G solvation = -30018.637983 eV Core-core repulsion = 26091.263277 eV Total energy + Delta-G solvation = -3927.374707 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.33402 -39.71135 -38.55874 -37.13624 -35.22818 -34.61416 -34.19927 -32.00046 -31.18384 -29.42483 -28.61240 -27.59763 -27.54230 -27.06875 -25.15317 -23.43375 -22.64179 -22.39714 -21.74219 -21.37409 -19.93731 -18.56584 -17.94860 -17.45160 -17.21346 -16.72805 -16.56775 -16.12206 -15.94051 -15.85924 -15.43385 -15.30938 -15.18985 -14.91502 -14.66234 -14.44793 -14.24215 -13.90039 -13.70534 -13.46607 -13.37353 -13.30459 -13.22562 -13.06752 -12.97968 -12.73409 -12.64062 -12.57933 -12.48925 -12.37206 -12.30952 -11.99384 -11.85132 -11.62439 -11.58068 -11.42393 -11.37964 -11.34814 -10.70046 -10.62007 -10.18947 -9.39185 -9.16333 -8.94466 -8.20672 -6.30405 0.92429 1.41333 1.42521 1.54549 1.64587 1.91976 2.40412 2.91256 3.11766 3.39787 3.64901 3.72666 3.73293 3.77380 3.98610 4.10018 4.17338 4.22547 4.31779 4.34258 4.35952 4.44538 4.49172 4.55307 4.59170 4.63203 4.65684 4.73022 4.75359 4.76265 4.85185 4.86809 4.93729 4.96496 4.99053 5.08787 5.18230 5.18719 5.20478 5.28129 5.34761 5.35694 5.42221 5.62382 5.65261 5.76622 5.90894 5.99680 6.06397 6.11847 6.33476 6.46808 6.65372 6.78233 6.85986 6.99160 7.39324 8.90173 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.023775 B = 0.001836 C = 0.001785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.446104 B =15245.425988 C =15682.798601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.065 4.065 3 C -0.146 4.146 4 C -0.009 4.009 5 H 0.087 0.913 6 C 0.077 3.923 7 N -0.668 5.668 8 C 0.037 3.963 9 C 0.131 3.869 10 H 0.098 0.902 11 O -0.559 6.559 12 C 0.023 3.977 13 N -0.540 5.540 14 C 0.040 3.960 15 C 0.208 3.792 16 C -0.522 4.522 17 H 0.062 0.938 18 C -0.001 4.001 19 N -0.935 5.935 20 Si 0.969 3.031 21 H -0.273 1.273 22 H -0.282 1.282 23 H -0.265 1.265 24 C 0.098 3.902 25 C -0.278 4.278 26 C 0.039 3.961 27 N -0.340 5.340 28 N -0.379 5.379 29 C 0.089 3.911 30 H 0.052 0.948 31 H 0.057 0.943 32 H 0.046 0.954 33 H 0.072 0.928 34 H 0.040 0.960 35 H 0.090 0.910 36 H 0.045 0.955 37 H 0.075 0.925 38 H 0.025 0.975 39 H 0.350 0.650 40 H 0.082 0.918 41 H 0.038 0.962 42 H 0.378 0.622 43 H 0.031 0.969 44 H 0.065 0.935 45 H 0.010 0.990 46 H 0.053 0.947 47 H 0.079 0.921 48 H -0.040 1.040 49 H 0.003 0.997 50 H 0.264 0.736 51 H 0.157 0.843 52 H 0.203 0.797 53 H 0.080 0.920 54 H 0.093 0.907 55 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.170 -12.405 1.413 28.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.084 4.084 3 C -0.204 4.204 4 C -0.030 4.030 5 H 0.105 0.895 6 C -0.052 4.052 7 N -0.300 5.300 8 C -0.093 4.093 9 C 0.071 3.929 10 H 0.116 0.884 11 O -0.364 6.364 12 C -0.106 4.106 13 N -0.264 5.264 14 C -0.109 4.109 15 C 0.081 3.919 16 C -0.561 4.561 17 H 0.080 0.920 18 C -0.198 4.198 19 N -0.575 5.575 20 Si 0.794 3.206 21 H -0.198 1.198 22 H -0.207 1.207 23 H -0.190 1.190 24 C -0.030 4.030 25 C -0.308 4.308 26 C -0.146 4.146 27 N -0.162 5.162 28 N -0.162 5.162 29 C -0.051 4.051 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.066 0.934 33 H 0.090 0.910 34 H 0.059 0.941 35 H 0.108 0.892 36 H 0.064 0.936 37 H 0.094 0.906 38 H 0.043 0.957 39 H 0.170 0.830 40 H 0.100 0.900 41 H 0.056 0.944 42 H 0.226 0.774 43 H 0.049 0.951 44 H 0.084 0.916 45 H 0.029 0.971 46 H 0.072 0.928 47 H 0.097 0.903 48 H -0.023 1.023 49 H 0.021 0.979 50 H 0.073 0.927 51 H 0.175 0.825 52 H 0.220 0.780 53 H 0.099 0.901 54 H 0.111 0.889 55 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -26.845 -12.163 0.796 29.483 hybrid contribution 1.876 -0.447 0.028 1.929 sum -24.969 -12.610 0.824 27.985 Atomic orbital electron populations 1.21934 0.95578 1.01564 1.01540 1.20894 0.94913 0.96697 0.95941 1.22016 1.03962 0.93845 1.00535 1.19879 0.93707 0.88466 1.00919 0.89462 1.21850 0.92210 0.89980 1.01201 1.60609 1.06004 1.17887 1.45510 1.22501 0.88652 0.96120 1.02024 1.21764 0.90013 0.93440 0.87651 0.88406 1.86576 1.79330 1.55042 1.15451 1.22853 0.96902 0.90371 1.00492 1.61947 1.11937 1.16197 1.36275 1.22238 1.00580 0.98857 0.89176 1.19384 0.83055 0.96249 0.93171 1.21477 0.92437 0.93765 1.48388 0.92028 1.25927 0.97190 1.01618 0.95100 1.70083 1.03539 1.32562 1.51362 0.85379 0.77740 0.79182 0.78302 1.19810 1.20712 1.18972 1.21178 0.99101 0.95944 0.86812 1.21440 1.13376 0.95731 1.00205 1.24282 0.98968 0.99818 0.91524 1.77321 1.22348 1.00538 1.15958 1.48749 1.47850 1.12486 1.07085 1.22093 1.04079 1.00980 0.77976 0.92925 0.92395 0.93443 0.91006 0.94132 0.89183 0.93595 0.90630 0.95680 0.83004 0.89968 0.94392 0.77430 0.95063 0.91644 0.97121 0.92767 0.90259 1.02255 0.97893 0.92712 0.82537 0.78043 0.90119 0.88879 0.87755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 8.81 71.98 0.63 -1.35 16 2 C -0.07 -0.86 2.09 -10.79 -0.02 -0.88 16 3 C -0.15 -2.17 8.21 71.98 0.59 -1.58 16 4 C -0.01 -0.12 1.92 -11.54 -0.02 -0.14 16 5 H 0.09 1.00 6.91 -2.39 -0.02 0.98 16 6 C 0.08 1.06 5.02 86.30 0.43 1.49 16 7 N -0.67 -9.94 3.18 -513.88 -1.63 -11.57 16 8 C 0.04 0.67 5.39 86.31 0.47 1.13 16 9 C 0.13 3.21 3.19 30.59 0.10 3.30 16 10 H 0.10 2.57 6.33 -2.39 -0.02 2.55 16 11 O -0.56 -14.35 12.62 -148.98 -1.88 -16.23 16 12 C 0.02 0.75 4.60 86.30 0.40 1.15 16 13 N -0.54 -22.93 4.70 -927.06 -4.36 -27.29 16 14 C 0.04 1.52 9.14 127.69 1.17 2.69 16 15 C 0.21 11.08 4.72 85.56 0.40 11.48 16 16 C -0.52 -29.84 8.46 25.60 0.22 -29.62 16 17 H 0.06 3.48 7.12 -2.91 -0.02 3.46 16 18 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 19 N -0.93 -56.32 13.29 21.45 0.28 -56.04 16 20 Si 0.97 44.45 29.54 68.60 2.03 46.48 16 21 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 22 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 23 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 24 C 0.10 1.55 4.92 41.40 0.20 1.75 16 25 C -0.28 -4.45 8.58 21.99 0.19 -4.27 16 26 C 0.04 0.66 12.03 85.23 1.03 1.69 16 27 N -0.34 -7.21 12.58 -57.02 -0.72 -7.92 16 28 N -0.38 -6.60 4.01 -356.06 -1.43 -8.03 16 29 C 0.09 0.95 11.27 127.77 1.44 2.39 16 30 H 0.05 0.78 5.98 -2.39 -0.01 0.77 16 31 H 0.06 0.73 8.14 -2.39 -0.02 0.72 16 32 H 0.05 0.64 8.14 -2.38 -0.02 0.62 16 33 H 0.07 0.97 7.58 -2.39 -0.02 0.96 16 34 H 0.04 0.61 8.12 -2.38 -0.02 0.59 16 35 H 0.09 1.54 5.86 -2.38 -0.01 1.53 16 36 H 0.04 0.68 8.10 -2.39 -0.02 0.67 16 37 H 0.08 1.13 8.13 -2.38 -0.02 1.11 16 38 H 0.02 0.37 8.13 -2.39 -0.02 0.35 16 39 H 0.35 5.12 8.12 -89.69 -0.73 4.39 16 40 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 42 H 0.38 7.66 9.05 -74.06 -0.67 6.99 16 43 H 0.03 1.01 8.12 -2.39 -0.02 0.99 16 44 H 0.07 2.14 7.93 -2.38 -0.02 2.13 16 45 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 46 H 0.05 2.28 6.76 -2.39 -0.02 2.26 16 47 H 0.08 2.54 6.37 -2.39 -0.02 2.52 16 48 H -0.04 -2.33 8.12 -2.38 -0.02 -2.35 16 49 H 0.00 0.17 7.93 -2.39 -0.02 0.15 16 50 H 0.26 14.94 8.31 -92.70 -0.77 14.17 16 51 H 0.16 2.05 7.55 -2.91 -0.02 2.02 16 52 H 0.20 2.20 8.06 -2.91 -0.02 2.18 16 53 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 54 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 55 H 0.10 0.70 6.98 -2.39 -0.02 0.68 16 Total: -1.00 -70.16 427.59 -0.56 -70.71 By element: Atomic # 1 Polarization: 20.74 SS G_CDS: -0.53 Total: 20.21 kcal Atomic # 6 Polarization: -18.00 SS G_CDS: 7.68 Total: -10.32 kcal Atomic # 7 Polarization: -103.00 SS G_CDS: -7.85 Total: -110.86 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: -1.88 Total: -16.23 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -70.16 -0.56 -70.71 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591763437.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.179 kcal (2) G-P(sol) polarization free energy of solvation -70.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds