Wall clock time and date at job start Tue Mar 31 2020 22:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46851 * 110.99968 * 2 1 4 4 C 1.53034 * 109.52665 * 185.84040 * 3 2 1 5 5 C 1.53125 * 109.27777 * 300.81961 * 4 3 2 6 6 C 1.53122 * 109.15710 * 57.65603 * 5 4 3 7 7 H 1.08996 * 109.54071 * 62.30324 * 6 5 4 8 8 N 1.46898 * 109.49997 * 182.40731 * 6 5 4 9 9 C 1.46905 * 110.99754 * 189.80210 * 8 6 5 10 10 C 1.53246 * 109.33852 * 187.24843 * 9 8 6 11 11 N 1.47076 * 108.52106 * 306.17356 * 10 9 8 12 12 C 1.34777 * 120.87716 * 231.18366 * 11 10 9 13 13 O 1.21282 * 120.00142 * 359.97438 * 12 11 10 14 14 C 1.50700 * 119.99986 * 179.97438 * 12 11 10 15 15 H 1.09001 * 109.47087 * 40.00373 * 14 12 11 16 16 N 1.46905 * 109.47121 * 160.00176 * 14 12 11 17 17 C 1.52998 * 109.47064 * 280.00094 * 14 12 11 18 18 C 1.53004 * 109.47139 * 174.99796 * 17 14 12 19 19 C 1.50698 * 109.47137 * 179.97438 * 18 17 14 20 20 H 1.08002 * 120.00164 * 0.02562 * 19 18 17 21 21 C 1.37876 * 120.00019 * 180.02562 * 19 18 17 22 22 N 1.31520 * 120.00123 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00122 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47051 * 60.00237 * 23 21 19 25 25 H 1.48502 * 109.46995 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.46717 * 299.99835 * 23 21 19 27 27 C 1.47073 * 118.24264 * 51.45625 * 11 10 9 28 28 C 1.46904 * 110.99892 * 314.09731 * 8 6 5 29 29 C 1.46843 * 111.00331 * 124.20889 * 2 1 3 30 30 H 1.09000 * 109.47461 * 295.78675 * 1 2 3 31 31 H 1.08998 * 109.47812 * 55.79135 * 1 2 3 32 32 H 1.09004 * 109.47040 * 175.79197 * 1 2 3 33 33 H 1.09003 * 109.46283 * 305.85653 * 3 2 1 34 34 H 1.09005 * 109.46234 * 65.82171 * 3 2 1 35 35 H 1.08997 * 109.50256 * 60.75785 * 4 3 2 36 36 H 1.08999 * 109.50759 * 180.87933 * 4 3 2 37 37 H 1.08999 * 109.52082 * 297.75107 * 5 4 3 38 38 H 1.08994 * 109.52000 * 177.55444 * 5 4 3 39 39 H 1.09001 * 109.49250 * 67.29560 * 9 8 6 40 40 H 1.08995 * 109.49239 * 307.20682 * 9 8 6 41 41 H 1.08996 * 109.62888 * 186.45374 * 10 9 8 42 42 H 1.09005 * 109.78788 * 65.97324 * 10 9 8 43 43 H 1.00901 * 110.99869 * 60.00289 * 16 14 12 44 44 H 1.00896 * 110.99543 * 183.95412 * 16 14 12 45 45 H 1.08995 * 109.47368 * 294.99520 * 17 14 12 46 46 H 1.09001 * 109.47446 * 54.99927 * 17 14 12 47 47 H 1.08994 * 109.47287 * 300.00153 * 18 17 14 48 48 H 1.09004 * 109.46568 * 60.00209 * 18 17 14 49 49 H 0.96998 * 120.00540 * 179.97438 * 22 21 19 50 50 H 1.09004 * 109.62943 * 68.25055 * 27 11 10 51 51 H 1.08994 * 109.63511 * 188.83425 * 27 11 10 52 52 H 1.08988 * 109.49633 * 292.70950 * 28 8 6 53 53 H 1.09001 * 109.48614 * 52.79344 * 28 8 6 54 54 H 1.09003 * 109.46445 * 54.14643 * 29 2 1 55 55 H 1.09003 * 109.46200 * 294.17887 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5180 1.3343 -0.1468 5 6 4.1188 0.5371 1.0144 6 6 3.5181 -0.8714 1.0208 7 1 3.7813 -1.3841 0.0957 8 7 4.0461 -1.6244 2.1662 9 6 3.6781 -3.0439 2.0778 10 6 4.0878 -3.7559 3.3714 11 7 5.5150 -3.4974 3.6151 12 6 6.3692 -4.5104 3.8617 13 8 5.9639 -5.6533 3.8853 14 6 7.8278 -4.2230 4.1081 15 1 7.9230 -3.3278 4.7227 16 7 8.4406 -5.3623 4.8043 17 6 8.5370 -4.0013 2.7706 18 6 9.9878 -3.5874 3.0251 19 6 10.6865 -3.3696 1.7077 20 1 10.1493 -3.5118 0.7816 21 6 12.0114 -2.9889 1.6847 22 7 12.6657 -2.8162 2.8124 23 14 12.8773 -2.7183 0.0517 24 1 12.1827 -1.6459 -0.7051 25 1 14.2854 -2.3166 0.2987 26 1 12.8518 -3.9766 -0.7364 27 6 5.9844 -2.1039 3.5885 28 6 5.5011 -1.4574 2.2805 29 6 1.9952 -0.7707 1.1337 30 1 -0.3634 0.4470 0.9253 31 1 -0.3635 0.5777 -0.8498 32 1 -0.3633 -1.0249 -0.0754 33 1 1.5633 1.9258 -0.8330 34 1 1.7323 1.8609 0.9376 35 1 3.7812 0.8569 -1.0906 36 1 3.9098 2.3513 -0.1310 37 1 3.8886 1.0356 1.9560 38 1 5.1996 0.4716 0.8904 39 1 4.1924 -3.5010 1.2325 40 1 2.6005 -3.1323 1.9396 41 1 3.9223 -4.8282 3.2674 42 1 3.4990 -3.3738 4.2054 43 1 8.3653 -6.2050 4.2545 44 1 9.4026 -5.1680 5.0384 45 1 8.5188 -4.9250 2.1923 46 1 8.0268 -3.2146 2.2149 47 1 10.0060 -2.6637 3.6035 48 1 10.4979 -4.3743 3.5808 49 1 13.5979 -2.5488 2.7963 50 1 5.5740 -1.5629 4.4413 51 1 7.0734 -2.0834 3.6280 52 1 5.9900 -1.9366 1.4324 53 1 5.7456 -0.3952 2.2893 54 1 1.5635 -1.7715 1.1242 55 1 1.7324 -0.2708 2.0660 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592145125.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:25 Heat of formation + Delta-G solvation = -49.113160 kcal Electronic energy + Delta-G solvation = -31117.356264 eV Core-core repulsion = 27187.701623 eV Total energy + Delta-G solvation = -3929.654641 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.55962 -40.42378 -38.57328 -37.15824 -35.85717 -34.86508 -33.85350 -32.22160 -31.70541 -31.15434 -28.54298 -27.77916 -27.34993 -25.69013 -24.87278 -23.45373 -23.14913 -22.37894 -21.77531 -20.62657 -19.85178 -18.94752 -18.29018 -17.31140 -17.11718 -16.55166 -16.35955 -16.28822 -16.18772 -15.89534 -15.78724 -15.52951 -15.45617 -15.12374 -14.77370 -14.72998 -14.65019 -14.28826 -14.11079 -13.77959 -13.62398 -13.48056 -13.30026 -13.03777 -12.90569 -12.73137 -12.65017 -12.54979 -12.54257 -12.35205 -12.27629 -12.07750 -11.82588 -11.76068 -11.69635 -11.48467 -11.32399 -11.10233 -10.68321 -10.55718 -9.86294 -9.66261 -9.34793 -9.28015 -8.21474 -6.31752 1.39375 1.40590 1.48498 1.55162 1.88367 2.39397 2.58668 3.12092 3.18183 3.42923 3.63883 3.72652 3.83236 3.92207 3.94845 4.04877 4.07328 4.17076 4.18344 4.21610 4.28352 4.35954 4.37607 4.44687 4.55335 4.57145 4.60549 4.61906 4.64326 4.72071 4.78779 4.82042 4.82294 4.86099 4.92812 4.97063 5.01069 5.02930 5.08110 5.11544 5.18443 5.38216 5.44726 5.46203 5.63930 5.79714 5.87205 5.95470 6.04241 6.12749 6.18918 6.20589 6.35108 6.45534 6.82757 7.11736 7.37190 8.88995 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.010518 B = 0.002952 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2661.513473 B = 9484.421157 C =11603.571848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.560 5.560 3 C 0.055 3.945 4 C -0.114 4.114 5 C -0.119 4.119 6 C 0.092 3.908 7 H 0.033 0.967 8 N -0.528 5.528 9 C 0.048 3.952 10 C 0.118 3.882 11 N -0.611 5.611 12 C 0.526 3.474 13 O -0.573 6.573 14 C 0.081 3.919 15 H 0.109 0.891 16 N -0.830 5.830 17 C -0.118 4.118 18 C 0.034 3.966 19 C -0.544 4.544 20 H 0.052 0.948 21 C 0.009 3.991 22 N -0.925 5.925 23 Si 0.956 3.044 24 H -0.267 1.267 25 H -0.282 1.282 26 H -0.273 1.273 27 C 0.107 3.893 28 C 0.041 3.959 29 C 0.073 3.927 30 H 0.028 0.972 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.083 0.917 34 H 0.036 0.964 35 H 0.060 0.940 36 H 0.084 0.916 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.021 0.979 40 H 0.106 0.894 41 H 0.080 0.920 42 H 0.088 0.912 43 H 0.343 0.657 44 H 0.353 0.647 45 H 0.040 0.960 46 H 0.063 0.937 47 H 0.005 0.995 48 H 0.002 0.998 49 H 0.264 0.736 50 H 0.096 0.904 51 H 0.090 0.910 52 H 0.024 0.976 53 H 0.111 0.889 54 H 0.074 0.926 55 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.181 10.070 -2.895 26.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.285 5.285 3 C -0.072 4.072 4 C -0.152 4.152 5 C -0.157 4.157 6 C -0.017 4.017 7 H 0.051 0.949 8 N -0.253 5.253 9 C -0.080 4.080 10 C -0.004 4.004 11 N -0.344 5.344 12 C 0.315 3.685 13 O -0.453 6.453 14 C -0.034 4.034 15 H 0.126 0.874 16 N -0.361 5.361 17 C -0.158 4.158 18 C -0.004 4.004 19 C -0.582 4.582 20 H 0.070 0.930 21 C -0.190 4.190 22 N -0.565 5.565 23 Si 0.781 3.219 24 H -0.191 1.191 25 H -0.207 1.207 26 H -0.198 1.198 27 C -0.015 4.015 28 C -0.088 4.088 29 C -0.055 4.055 30 H 0.047 0.953 31 H 0.095 0.905 32 H 0.089 0.911 33 H 0.102 0.898 34 H 0.054 0.946 35 H 0.079 0.921 36 H 0.103 0.897 37 H 0.092 0.908 38 H 0.085 0.915 39 H 0.040 0.960 40 H 0.124 0.876 41 H 0.098 0.902 42 H 0.106 0.894 43 H 0.156 0.844 44 H 0.168 0.832 45 H 0.058 0.942 46 H 0.082 0.918 47 H 0.023 0.977 48 H 0.020 0.980 49 H 0.073 0.927 50 H 0.114 0.886 51 H 0.109 0.891 52 H 0.042 0.958 53 H 0.129 0.871 54 H 0.092 0.908 55 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -24.848 9.604 -2.241 26.733 hybrid contribution 1.650 -0.099 -1.581 2.287 sum -23.198 9.505 -3.823 25.359 Atomic orbital electron populations 1.22363 0.85939 1.02736 1.01013 1.61853 1.08771 1.14412 1.43456 1.22144 0.95471 0.88680 1.00952 1.21565 0.94573 1.00816 0.98246 1.21783 1.00088 0.94108 0.99685 1.21563 0.94833 0.94511 0.90751 0.94869 1.61975 1.11695 1.09499 1.42089 1.22465 1.02005 0.87692 0.95854 1.21716 0.80075 1.00770 0.97835 1.48197 1.08960 1.07127 1.70142 1.20780 0.88378 0.84465 0.74900 1.90600 1.79270 1.22452 1.52928 1.21418 0.89976 0.96251 0.95724 0.87351 1.58768 1.23760 1.04697 1.48873 1.22136 0.97615 1.00532 0.95519 1.18936 0.90331 0.95338 0.95753 1.21538 0.96505 1.46508 0.93664 0.92977 1.25818 0.98349 0.95079 0.99782 1.70045 1.10679 1.47973 1.27758 0.85646 0.77557 0.78833 0.79904 1.19143 1.20745 1.19842 1.22181 1.00488 0.80017 0.98839 1.22644 0.87520 1.02448 0.96141 1.21937 0.93453 0.98426 0.91664 0.95295 0.90480 0.91093 0.89849 0.94561 0.92084 0.89718 0.90751 0.91454 0.96020 0.87605 0.90179 0.89369 0.84397 0.83176 0.94156 0.91836 0.97658 0.98002 0.92688 0.88616 0.89140 0.95787 0.87131 0.90763 0.94057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.59 127.69 1.22 1.54 16 2 N -0.56 -8.49 4.91 -922.59 -4.53 -13.02 16 3 C 0.06 0.72 5.46 86.32 0.47 1.19 16 4 C -0.11 -1.57 6.09 30.65 0.19 -1.38 16 5 C -0.12 -1.86 4.44 30.68 0.14 -1.73 16 6 C 0.09 1.63 2.16 44.97 0.10 1.73 16 7 H 0.03 0.73 8.08 -2.39 -0.02 0.71 16 8 N -0.53 -10.06 4.49 -868.74 -3.90 -13.96 16 9 C 0.05 0.97 5.47 86.38 0.47 1.44 16 10 C 0.12 2.73 6.60 86.35 0.57 3.30 16 11 N -0.61 -16.62 3.00 -817.05 -2.45 -19.08 16 12 C 0.53 18.04 6.96 87.66 0.61 18.65 16 13 O -0.57 -23.15 15.70 -3.04 -0.05 -23.19 16 14 C 0.08 2.82 2.35 44.17 0.10 2.92 16 15 H 0.11 3.49 6.85 -2.39 -0.02 3.47 16 16 N -0.83 -29.45 8.94 -171.79 -1.54 -30.98 16 17 C -0.12 -4.67 4.45 30.59 0.14 -4.53 16 18 C 0.03 1.63 4.74 29.85 0.14 1.77 16 19 C -0.54 -29.64 9.11 25.60 0.23 -29.41 16 20 H 0.05 2.79 7.74 -2.91 -0.02 2.76 16 21 C 0.01 0.47 5.46 84.65 0.46 0.93 16 22 N -0.92 -53.69 13.29 21.45 0.28 -53.40 16 23 Si 0.96 43.05 29.54 68.60 2.03 45.08 16 24 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 25 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 26 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 27 C 0.11 2.44 6.00 86.51 0.52 2.96 16 28 C 0.04 0.87 5.07 86.54 0.44 1.30 16 29 C 0.07 1.16 4.75 86.33 0.41 1.57 16 30 H 0.03 0.31 8.14 -2.39 -0.02 0.29 16 31 H 0.08 0.74 8.09 -2.39 -0.02 0.72 16 32 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 33 H 0.08 0.93 8.09 -2.39 -0.02 0.91 16 34 H 0.04 0.47 8.14 -2.38 -0.02 0.45 16 35 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.07 1.12 6.35 -2.39 -0.02 1.11 16 39 H 0.02 0.52 8.14 -2.39 -0.02 0.50 16 40 H 0.11 1.68 6.38 -2.39 -0.02 1.67 16 41 H 0.08 2.09 7.06 -2.39 -0.02 2.08 16 42 H 0.09 1.77 8.14 -2.38 -0.02 1.75 16 43 H 0.34 12.48 8.58 -89.69 -0.77 11.71 16 44 H 0.35 12.54 7.55 -89.70 -0.68 11.86 16 45 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 46 H 0.06 2.40 6.95 -2.39 -0.02 2.38 16 47 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 48 H 0.00 0.09 6.87 -2.39 -0.02 0.07 16 49 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 50 H 0.10 1.84 8.14 -2.38 -0.02 1.82 16 51 H 0.09 2.26 4.86 -2.39 -0.01 2.25 16 52 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 53 H 0.11 2.00 5.79 -2.39 -0.01 1.98 16 54 H 0.07 1.14 6.58 -2.39 -0.02 1.12 16 55 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 Total: -1.00 -65.39 409.86 -4.51 -69.91 By element: Atomic # 1 Polarization: 36.96 SS G_CDS: -0.57 Total: 36.39 kcal Atomic # 6 Polarization: -3.96 SS G_CDS: 6.21 Total: 2.25 kcal Atomic # 7 Polarization: -118.30 SS G_CDS: -12.14 Total: -130.44 kcal Atomic # 8 Polarization: -23.15 SS G_CDS: -0.05 Total: -23.19 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Total: -65.39 -4.51 -69.91 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592145125.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.794 kcal (2) G-P(sol) polarization free energy of solvation -65.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds