Wall clock time and date at job start Tue Mar 31 2020 22:56:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 120.00062 * 2 1 4 4 H 1.48498 * 109.47482 * 240.00128 * 3 2 1 5 5 H 1.48504 * 109.47325 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47360 * 120.00055 * 3 2 1 7 7 C 1.37875 * 120.00092 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00449 * 180.02562 * 7 2 1 9 9 C 1.50707 * 120.00067 * 359.97438 * 7 2 1 10 10 O 1.42902 * 110.63873 * 300.70668 * 9 7 2 11 11 C 1.55152 * 110.72048 * 177.56267 * 9 7 2 12 12 C 1.54911 * 101.58217 * 205.95976 * 11 9 7 13 13 N 1.47428 * 104.83126 * 37.00794 * 12 11 9 14 14 C 1.34780 * 125.64495 * 155.90743 * 13 12 11 15 15 O 1.21553 * 119.99459 * 175.32009 * 14 13 12 16 16 C 1.47786 * 119.99982 * 355.32120 * 14 13 12 17 17 C 1.39616 * 120.15541 * 41.87669 * 16 14 13 18 18 C 1.37905 * 119.86230 * 179.74437 * 17 16 14 19 19 C 1.38410 * 120.17297 * 0.55059 * 18 17 16 20 20 C 1.38285 * 120.31087 * 359.70335 * 19 18 17 21 21 C 1.38116 * 120.13404 * 0.02562 * 20 19 18 22 22 Br 1.89096 * 120.08912 * 179.97438 * 21 20 19 23 23 C 1.47018 * 108.70255 * 335.87204 * 13 12 11 24 24 H 0.96998 * 119.99643 * 359.97438 * 1 2 3 25 25 H 0.96697 * 114.00338 * 56.85901 * 10 9 7 26 26 H 1.09002 * 111.00443 * 324.03312 * 11 9 7 27 27 H 1.09000 * 111.00455 * 87.84774 * 11 9 7 28 28 H 1.09001 * 110.37118 * 155.84703 * 12 11 9 29 29 H 1.09008 * 110.36493 * 278.17395 * 12 11 9 30 30 H 1.08006 * 120.06698 * 359.97438 * 17 16 14 31 31 H 1.08000 * 119.91192 * 180.27904 * 18 17 16 32 32 H 1.08007 * 119.84564 * 179.72046 * 19 18 17 33 33 H 1.08000 * 119.92916 * 180.02562 * 20 19 18 34 34 H 1.08994 * 109.88551 * 241.63920 * 23 13 12 35 35 H 1.09009 * 109.88140 * 120.47310 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 8 0.4083 -2.5942 1.1496 11 6 2.2322 -3.6995 -0.0629 12 6 1.3484 -4.7899 -0.7183 13 7 0.5272 -4.0666 -1.7063 14 6 -0.0387 -4.6071 -2.8036 15 8 -0.7677 -3.9338 -3.5056 16 6 0.2271 -6.0182 -3.1533 17 6 0.2472 -6.9958 -2.1568 18 6 0.4906 -8.3116 -2.4906 19 6 0.7260 -8.6629 -3.8085 20 6 0.7129 -7.6996 -4.8006 21 6 0.4650 -6.3789 -4.4814 22 35 0.4481 -5.0625 -5.8389 23 6 0.4273 -2.6585 -1.2958 24 1 -0.4849 0.8401 0.0004 25 1 -0.2239 -1.8676 1.2351 26 1 3.0943 -3.4673 -0.6882 27 1 2.5467 -3.9994 0.9367 28 1 1.9705 -5.5348 -1.2146 29 1 0.7124 -5.2631 0.0299 30 1 0.0689 -6.7228 -1.1272 31 1 0.5019 -9.0692 -1.7210 32 1 0.9205 -9.6943 -4.0634 33 1 0.8969 -7.9806 -5.8270 34 1 -0.6146 -2.4005 -1.1065 35 1 0.8348 -2.0151 -2.0757 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592842876.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:56:35 Heat of formation + Delta-G solvation = -44.790237 kcal Electronic energy + Delta-G solvation = -21533.426166 eV Core-core repulsion = 18156.896669 eV Total energy + Delta-G solvation = -3376.529497 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 339.026 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.12365 -38.48036 -37.08017 -34.39012 -32.34769 -32.21046 -31.57453 -29.95470 -29.21052 -27.83025 -25.42624 -23.85287 -22.40176 -22.15679 -19.74244 -19.26930 -17.28932 -17.05948 -16.28170 -15.76263 -15.51793 -14.95652 -14.71175 -14.30696 -14.04235 -13.64424 -13.39558 -13.06536 -12.96468 -12.76900 -12.19444 -11.96496 -11.63109 -11.44865 -11.30401 -11.05921 -10.90143 -10.74731 -10.67079 -10.54179 -10.25552 -10.15778 -9.36747 -9.26541 -9.09329 -8.77731 -8.68572 -8.34625 -7.89859 -6.30491 -4.39552 0.76896 1.02337 1.67838 3.02650 3.21699 3.27741 3.29395 3.44985 3.69828 4.25743 4.57402 4.68889 4.77075 4.97017 5.07636 5.15996 5.35566 5.38074 5.60765 5.68911 5.81150 5.91721 5.96854 6.03331 6.14395 6.19233 6.46600 6.55720 6.72390 6.82784 6.94079 7.25039 7.35143 7.71423 7.97017 8.14034 8.60816 8.66617 9.28458 9.37897 10.77136 Molecular weight = 339.03amu Principal moments of inertia in cm(-1) A = 0.017537 B = 0.004145 C = 0.003577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.213507 B = 6753.830412 C = 7825.354696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.071 3.929 3 Si 0.904 3.096 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.540 4.540 8 H 0.067 0.933 9 C 0.249 3.751 10 O -0.586 6.586 11 C -0.118 4.118 12 C 0.098 3.902 13 N -0.601 5.601 14 C 0.553 3.447 15 O -0.521 6.521 16 C -0.090 4.090 17 C -0.087 4.087 18 C -0.112 4.112 19 C -0.102 4.102 20 C -0.100 4.100 21 C -0.051 4.051 22 Br -0.027 7.027 23 C 0.105 3.895 24 H 0.272 0.728 25 H 0.385 0.615 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.140 0.860 31 H 0.133 0.867 32 H 0.133 0.867 33 H 0.136 0.864 34 H 0.067 0.933 35 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.086 -16.646 -7.570 18.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.132 4.132 3 Si 0.731 3.269 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.578 4.578 8 H 0.085 0.915 9 C 0.209 3.791 10 O -0.396 6.396 11 C -0.156 4.156 12 C -0.025 4.025 13 N -0.334 5.334 14 C 0.339 3.661 15 O -0.398 6.398 16 C -0.095 4.095 17 C -0.106 4.106 18 C -0.131 4.131 19 C -0.121 4.121 20 C -0.120 4.120 21 C -0.132 4.132 22 Br 0.059 6.941 23 C -0.017 4.017 24 H 0.082 0.918 25 H 0.236 0.764 26 H 0.095 0.905 27 H 0.096 0.904 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.158 0.842 31 H 0.151 0.849 32 H 0.151 0.849 33 H 0.154 0.846 34 H 0.086 0.914 35 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.829 -16.191 -8.425 18.343 hybrid contribution 0.078 1.084 0.172 1.101 sum 1.906 -15.107 -8.253 17.319 Atomic orbital electron populations 1.69630 1.05996 1.28126 1.49599 1.25069 0.95050 0.99773 0.93308 0.86457 0.79557 0.82061 0.78832 1.20002 1.21041 1.19961 1.21474 0.93691 0.90087 1.52525 0.91530 1.19472 0.86106 0.92110 0.81434 1.86076 1.53649 1.52771 1.47057 1.22774 0.97595 0.94979 1.00296 1.22494 0.93412 0.95697 0.90905 1.48679 1.49664 1.12699 1.22367 1.17746 0.81473 0.85872 0.80975 1.90823 1.36618 1.61921 1.50417 1.20014 1.01615 0.95217 0.92636 1.21560 0.97284 0.92422 0.99342 1.21233 0.99071 0.96036 0.96723 1.21289 0.98727 0.99417 0.92694 1.21075 0.99819 0.90634 1.00482 1.21921 1.04264 0.94285 0.92738 1.96785 1.97323 1.53246 1.46718 1.23051 1.01911 0.77486 0.99212 0.91843 0.76374 0.90454 0.90414 0.91786 0.91546 0.84234 0.84865 0.84927 0.84633 0.91446 0.91398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.65 10.97 55.43 0.61 -23.04 16 2 C 0.07 1.84 5.26 -17.82 -0.09 1.75 16 3 Si 0.90 20.33 29.54 -169.99 -5.02 15.31 16 4 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.54 -13.92 8.12 -34.44 -0.28 -14.20 16 8 H 0.07 1.69 7.77 -52.49 -0.41 1.28 16 9 C 0.25 5.92 0.86 -89.94 -0.08 5.84 16 10 O -0.59 -14.45 13.09 -35.23 -0.46 -14.91 16 11 C -0.12 -2.30 6.22 -24.58 -0.15 -2.46 16 12 C 0.10 1.68 5.25 -2.53 -0.01 1.67 16 13 N -0.60 -12.32 3.33 -171.65 -0.57 -12.89 16 14 C 0.55 11.19 7.05 -12.35 -0.09 11.10 16 15 O -0.52 -12.16 15.43 5.32 0.08 -12.08 16 16 C -0.09 -1.45 5.38 -104.95 -0.56 -2.01 16 17 C -0.09 -1.11 7.98 -39.19 -0.31 -1.42 16 18 C -0.11 -1.09 10.03 -39.64 -0.40 -1.49 16 19 C -0.10 -0.93 10.04 -39.50 -0.40 -1.33 16 20 C -0.10 -1.11 9.78 -39.61 -0.39 -1.50 16 21 C -0.05 -0.76 6.24 -39.10 -0.24 -1.00 16 22 Br -0.03 -0.43 31.31 -68.01 -2.13 -2.56 16 23 C 0.10 2.51 5.40 -3.07 -0.02 2.50 16 24 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 25 H 0.39 9.82 7.17 45.56 0.33 10.15 16 26 H 0.08 1.46 8.04 -51.93 -0.42 1.04 16 27 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 28 H 0.06 0.93 6.81 -51.93 -0.35 0.58 16 29 H 0.07 1.07 7.33 -51.92 -0.38 0.69 16 30 H 0.14 1.69 6.02 -52.48 -0.32 1.38 16 31 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 32 H 0.13 0.78 8.06 -52.48 -0.42 0.36 16 33 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 34 H 0.07 1.77 8.01 -51.93 -0.42 1.36 16 35 H 0.07 1.78 7.82 -51.92 -0.41 1.38 16 LS Contribution 312.17 15.07 4.70 4.70 Total: -1.00 -29.46 312.17 -9.01 -38.47 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -3.20 Total: 9.55 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: -3.02 Total: -2.56 kcal Atomic # 7 Polarization: -35.97 SS G_CDS: 0.04 Total: -35.93 kcal Atomic # 8 Polarization: -26.61 SS G_CDS: -0.38 Total: -26.99 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Atomic # 35 Polarization: -0.43 SS G_CDS: -2.13 Total: -2.56 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -29.46 -9.01 -38.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592842876.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.321 kcal (2) G-P(sol) polarization free energy of solvation -29.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds