Wall clock time and date at job start Tue Mar 31 2020 22:56:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 120.00062 * 2 1 4 4 H 1.48498 * 109.47482 * 240.00128 * 3 2 1 5 5 H 1.48504 * 109.47325 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47360 * 120.00055 * 3 2 1 7 7 C 1.37875 * 120.00092 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00449 * 180.02562 * 7 2 1 9 9 C 1.50707 * 120.00067 * 359.97438 * 7 2 1 10 10 O 1.42902 * 110.63873 * 300.70668 * 9 7 2 11 11 C 1.55152 * 110.72048 * 177.56267 * 9 7 2 12 12 C 1.54911 * 101.58217 * 205.95976 * 11 9 7 13 13 N 1.47428 * 104.83126 * 37.00794 * 12 11 9 14 14 C 1.34780 * 125.64495 * 155.90743 * 13 12 11 15 15 O 1.21553 * 119.99459 * 175.32009 * 14 13 12 16 16 C 1.47786 * 119.99982 * 355.32120 * 14 13 12 17 17 C 1.39616 * 120.15541 * 41.87669 * 16 14 13 18 18 C 1.37905 * 119.86230 * 179.74437 * 17 16 14 19 19 C 1.38410 * 120.17297 * 0.55059 * 18 17 16 20 20 C 1.38285 * 120.31087 * 359.70335 * 19 18 17 21 21 C 1.38116 * 120.13404 * 0.02562 * 20 19 18 22 22 Br 1.89096 * 120.08912 * 179.97438 * 21 20 19 23 23 C 1.47018 * 108.70255 * 335.87204 * 13 12 11 24 24 H 0.96998 * 119.99643 * 359.97438 * 1 2 3 25 25 H 0.96697 * 114.00338 * 56.85901 * 10 9 7 26 26 H 1.09002 * 111.00443 * 324.03312 * 11 9 7 27 27 H 1.09000 * 111.00455 * 87.84774 * 11 9 7 28 28 H 1.09001 * 110.37118 * 155.84703 * 12 11 9 29 29 H 1.09008 * 110.36493 * 278.17395 * 12 11 9 30 30 H 1.08006 * 120.06698 * 359.97438 * 17 16 14 31 31 H 1.08000 * 119.91192 * 180.27904 * 18 17 16 32 32 H 1.08007 * 119.84564 * 179.72046 * 19 18 17 33 33 H 1.08000 * 119.92916 * 180.02562 * 20 19 18 34 34 H 1.08994 * 109.88551 * 241.63920 * 23 13 12 35 35 H 1.09009 * 109.88140 * 120.47310 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 8 0.4083 -2.5942 1.1496 11 6 2.2322 -3.6995 -0.0629 12 6 1.3484 -4.7899 -0.7183 13 7 0.5272 -4.0666 -1.7063 14 6 -0.0387 -4.6071 -2.8036 15 8 -0.7677 -3.9338 -3.5056 16 6 0.2271 -6.0182 -3.1533 17 6 0.2472 -6.9958 -2.1568 18 6 0.4906 -8.3116 -2.4906 19 6 0.7260 -8.6629 -3.8085 20 6 0.7129 -7.6996 -4.8006 21 6 0.4650 -6.3789 -4.4814 22 35 0.4481 -5.0625 -5.8389 23 6 0.4273 -2.6585 -1.2958 24 1 -0.4849 0.8401 0.0004 25 1 -0.2239 -1.8676 1.2351 26 1 3.0943 -3.4673 -0.6882 27 1 2.5467 -3.9994 0.9367 28 1 1.9705 -5.5348 -1.2146 29 1 0.7124 -5.2631 0.0299 30 1 0.0689 -6.7228 -1.1272 31 1 0.5019 -9.0692 -1.7210 32 1 0.9205 -9.6943 -4.0634 33 1 0.8969 -7.9806 -5.8270 34 1 -0.6146 -2.4005 -1.1065 35 1 0.8348 -2.0151 -2.0757 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592842876.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:56:35 Heat of formation + Delta-G solvation = -64.680902 kcal Electronic energy + Delta-G solvation = -21534.288690 eV Core-core repulsion = 18156.896669 eV Total energy + Delta-G solvation = -3377.392021 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 339.026 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.47725 -39.77268 -38.70340 -36.16701 -34.21251 -33.34191 -32.73990 -31.48319 -30.24222 -29.57287 -27.22181 -25.22321 -23.53641 -23.32865 -21.46731 -20.69174 -19.17103 -18.47025 -17.40253 -17.31798 -16.84810 -16.64424 -16.18766 -15.78486 -15.23925 -14.84079 -14.82049 -14.67079 -14.46603 -14.16604 -13.70664 -13.53166 -13.37483 -12.87605 -12.74697 -12.57039 -12.35146 -12.31503 -12.15299 -12.11564 -11.84768 -11.49274 -11.18410 -10.73265 -10.64762 -10.30080 -10.06185 -9.77708 -9.56918 -8.28485 -6.44743 -0.23064 0.14789 0.62879 1.41201 1.42251 1.50057 1.66911 2.01703 2.36714 2.62371 2.98092 3.39868 3.71787 3.77707 4.03235 4.08611 4.18930 4.28526 4.30826 4.34053 4.48626 4.58281 4.67571 4.83105 4.99118 5.08097 5.09725 5.22582 5.23835 5.34130 5.36444 5.48570 5.72842 5.77108 6.02087 6.55670 6.63904 7.07376 7.26696 7.34310 8.77311 Molecular weight = 339.03amu Principal moments of inertia in cm(-1) A = 0.017537 B = 0.004145 C = 0.003577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.213507 B = 6753.830412 C = 7825.354696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.027 3.973 3 Si 0.962 3.038 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.266 1.266 7 C -0.560 4.560 8 H 0.068 0.932 9 C 0.236 3.764 10 O -0.587 6.587 11 C -0.113 4.113 12 C 0.105 3.895 13 N -0.608 5.608 14 C 0.548 3.452 15 O -0.567 6.567 16 C -0.121 4.121 17 C -0.090 4.090 18 C -0.097 4.097 19 C -0.081 4.081 20 C -0.098 4.098 21 C -0.071 4.071 22 Br -0.057 7.057 23 C 0.123 3.877 24 H 0.271 0.729 25 H 0.377 0.623 26 H 0.080 0.920 27 H 0.095 0.905 28 H 0.099 0.901 29 H 0.082 0.918 30 H 0.144 0.856 31 H 0.175 0.825 32 H 0.179 0.821 33 H 0.158 0.842 34 H 0.031 0.969 35 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.606 -20.257 -7.136 21.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.174 4.174 3 Si 0.787 3.213 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.190 1.190 7 C -0.598 4.598 8 H 0.086 0.914 9 C 0.195 3.805 10 O -0.395 6.395 11 C -0.151 4.151 12 C -0.016 4.016 13 N -0.340 5.340 14 C 0.337 3.663 15 O -0.447 6.447 16 C -0.126 4.126 17 C -0.109 4.109 18 C -0.115 4.115 19 C -0.099 4.099 20 C -0.118 4.118 21 C -0.151 4.151 22 Br 0.029 6.971 23 C 0.000 4.000 24 H 0.080 0.920 25 H 0.227 0.773 26 H 0.099 0.901 27 H 0.113 0.887 28 H 0.117 0.883 29 H 0.100 0.900 30 H 0.162 0.838 31 H 0.193 0.807 32 H 0.196 0.804 33 H 0.175 0.825 34 H 0.049 0.951 35 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 3.374 -19.842 -7.975 21.650 hybrid contribution -0.412 2.074 0.024 2.115 sum 2.962 -17.768 -7.951 19.690 Atomic orbital electron populations 1.69743 1.07120 1.28595 1.50130 1.25806 0.95775 1.02797 0.93026 0.85541 0.78388 0.78424 0.78919 1.19965 1.20955 1.19026 1.21833 0.94007 0.91399 1.52560 0.91404 1.19664 0.86595 0.93558 0.80662 1.86061 1.53604 1.52337 1.47516 1.22772 0.96991 0.93667 1.01691 1.22639 0.93203 0.95223 0.90565 1.48722 1.50422 1.11398 1.23452 1.18549 0.80198 0.87683 0.79870 1.90778 1.38504 1.63756 1.51666 1.19725 1.05752 0.92901 0.94249 1.21705 0.97314 0.93225 0.98706 1.21706 0.96487 0.95174 0.98146 1.21856 0.95421 1.00919 0.91723 1.21435 0.98710 0.89188 1.02436 1.22081 1.06273 0.95227 0.91550 1.96746 1.97499 1.55116 1.47711 1.22522 0.99373 0.79572 0.98541 0.92004 0.77284 0.90093 0.88696 0.88295 0.89991 0.83848 0.80739 0.80356 0.82451 0.95061 0.95034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.39 10.97 21.45 0.24 -50.15 16 2 C 0.03 1.42 5.26 84.65 0.45 1.86 16 3 Si 0.96 42.36 29.54 68.60 2.03 44.38 16 4 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 5 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 6 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 7 C -0.56 -29.50 8.12 25.60 0.21 -29.29 16 8 H 0.07 3.46 7.77 -2.91 -0.02 3.44 16 9 C 0.24 11.43 0.86 -10.35 -0.01 11.42 16 10 O -0.59 -29.53 13.09 -148.98 -1.95 -31.48 16 11 C -0.11 -4.29 6.22 31.98 0.20 -4.09 16 12 C 0.11 3.44 5.25 86.85 0.46 3.90 16 13 N -0.61 -25.44 3.33 -815.24 -2.71 -28.16 16 14 C 0.55 22.81 7.05 86.77 0.61 23.42 16 15 O -0.57 -28.07 15.43 -3.88 -0.06 -28.13 16 16 C -0.12 -3.79 5.38 -20.08 -0.11 -3.89 16 17 C -0.09 -2.01 7.98 22.52 0.18 -1.83 16 18 C -0.10 -1.33 10.03 22.23 0.22 -1.11 16 19 C -0.08 -0.99 10.04 22.32 0.22 -0.77 16 20 C -0.10 -1.82 9.78 22.25 0.22 -1.60 16 21 C -0.07 -2.00 6.24 22.58 0.14 -1.86 16 22 Br -0.06 -1.83 31.31 -20.37 -0.64 -2.47 16 23 C 0.12 6.24 5.40 86.73 0.47 6.70 16 24 H 0.27 14.31 8.31 -92.71 -0.77 13.54 16 25 H 0.38 20.04 7.17 -74.06 -0.53 19.51 16 26 H 0.08 2.98 8.04 -2.39 -0.02 2.96 16 27 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 28 H 0.10 2.58 6.81 -2.39 -0.02 2.56 16 29 H 0.08 2.44 7.33 -2.38 -0.02 2.43 16 30 H 0.14 3.02 6.02 -2.91 -0.02 3.00 16 31 H 0.18 1.04 8.06 -2.91 -0.02 1.02 16 32 H 0.18 0.69 8.06 -2.91 -0.02 0.66 16 33 H 0.16 2.18 8.06 -2.91 -0.02 2.16 16 34 H 0.03 1.76 8.01 -2.39 -0.02 1.74 16 35 H 0.03 1.77 7.82 -2.38 -0.02 1.76 16 Total: -1.00 -69.37 312.17 0.76 -68.61 By element: Atomic # 1 Polarization: 23.93 SS G_CDS: 0.60 Total: 24.53 kcal Atomic # 6 Polarization: -0.40 SS G_CDS: 3.26 Total: 2.86 kcal Atomic # 7 Polarization: -75.83 SS G_CDS: -2.48 Total: -78.31 kcal Atomic # 8 Polarization: -57.59 SS G_CDS: -2.01 Total: -59.60 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.38 kcal Atomic # 35 Polarization: -1.83 SS G_CDS: -0.64 Total: -2.47 kcal Total: -69.37 0.76 -68.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592842876.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.928 kcal (2) G-P(sol) polarization free energy of solvation -69.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds