Wall clock time and date at job start Tue Mar 31 2020 22:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86805 * 119.99924 * 2 1 4 4 H 1.48500 * 109.47009 * 269.99924 * 3 2 1 5 5 H 1.48499 * 109.46793 * 29.99728 * 3 2 1 6 6 H 1.48499 * 109.47130 * 149.99997 * 3 2 1 7 7 C 1.37879 * 119.99988 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99322 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00177 * 0.27508 * 7 2 1 10 10 O 1.42908 * 110.64093 * 300.42554 * 9 7 2 11 11 C 1.55156 * 110.71873 * 177.28623 * 9 7 2 12 12 C 1.54914 * 101.57741 * 206.13310 * 11 9 7 13 13 N 1.47416 * 104.83367 * 37.01236 * 12 11 9 14 14 C 1.34782 * 125.65059 * 155.90703 * 13 12 11 15 15 O 1.21559 * 119.99796 * 176.29578 * 14 13 12 16 16 C 1.47844 * 119.99774 * 356.30097 * 14 13 12 17 17 C 1.39597 * 120.14216 * 27.17485 * 16 14 13 18 18 C 1.37940 * 119.86983 * 180.02562 * 17 16 14 19 19 C 1.38356 * 120.16083 * 0.02562 * 18 17 16 20 20 C 1.38428 * 120.28269 * 359.97438 * 19 18 17 21 21 Br 1.89099 * 119.93719 * 180.02562 * 20 19 18 22 22 C 1.38075 * 120.12315 * 359.72863 * 20 19 18 23 23 C 1.47320 * 108.73476 * 335.71176 * 13 12 11 24 24 H 0.96994 * 120.00066 * 0.02562 * 1 2 3 25 25 H 0.96703 * 113.99564 * 59.29836 * 10 9 7 26 26 H 1.08992 * 111.00693 * 324.20722 * 11 9 7 27 27 H 1.08998 * 111.00385 * 88.02804 * 11 9 7 28 28 H 1.09004 * 110.36485 * 155.84625 * 12 11 9 29 29 H 1.09003 * 110.36838 * 278.16703 * 12 11 9 30 30 H 1.07995 * 120.06024 * 0.03030 * 17 16 14 31 31 H 1.08007 * 119.91493 * 179.97438 * 18 17 16 32 32 H 1.08006 * 119.86050 * 180.02562 * 19 18 17 33 33 H 1.07998 * 120.08098 * 180.29626 * 22 20 19 34 34 H 1.09000 * 110.06615 * 241.87375 * 23 13 12 35 35 H 1.09004 * 109.85002 * 120.61597 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 -0.0051 10 8 0.4080 -2.5990 1.1443 11 6 2.2324 -3.6991 -0.0721 12 6 1.3502 -4.7854 -0.7366 13 7 0.5319 -4.0561 -1.7223 14 6 -0.0312 -4.5898 -2.8245 15 8 -0.7440 -3.9071 -3.5341 16 6 0.2180 -6.0054 -3.1703 17 6 0.5192 -6.9293 -2.1680 18 6 0.7512 -8.2486 -2.4971 19 6 0.6866 -8.6576 -3.8172 20 6 0.3884 -7.7469 -4.8163 21 35 0.3019 -8.3166 -6.6173 22 6 0.1481 -6.4247 -4.4995 23 6 0.4271 -2.6482 -1.3014 24 1 -0.4850 0.8400 -0.0004 25 1 -0.2490 -1.8927 1.2127 26 1 3.0962 -3.4633 -0.6936 27 1 2.5441 -4.0052 0.9265 28 1 1.9736 -5.5273 -1.2357 29 1 0.7122 -5.2632 0.0070 30 1 0.5703 -6.6116 -1.1371 31 1 0.9847 -8.9640 -1.7222 32 1 0.8687 -9.6919 -4.0693 33 1 -0.0891 -5.7158 -5.2789 34 1 -0.6148 -2.3917 -1.1098 35 1 0.8345 -1.9989 -2.0764 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592843532.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:05 Heat of formation + Delta-G solvation = -45.530612 kcal Electronic energy + Delta-G solvation = -21239.668814 eV Core-core repulsion = 17863.107211 eV Total energy + Delta-G solvation = -3376.561602 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 339.026 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.23764 -38.52516 -37.16977 -34.51465 -32.60734 -32.25119 -31.40552 -30.12765 -29.49312 -27.82472 -25.53751 -23.94274 -22.66405 -21.99989 -19.84225 -19.34856 -17.28421 -16.98788 -16.53451 -15.84898 -15.44332 -14.93033 -14.80299 -14.38172 -14.10219 -13.71312 -13.47918 -13.16904 -13.00399 -12.85063 -12.30989 -12.04037 -11.66663 -11.51969 -11.33992 -11.09112 -11.03262 -10.76398 -10.71535 -10.54285 -10.51215 -10.23148 -9.57659 -9.39122 -9.18647 -8.90269 -8.71999 -8.38519 -8.01727 -6.33766 -4.42620 0.70061 0.98352 1.39037 2.93188 3.18306 3.26316 3.28549 3.43306 3.71393 4.23174 4.54987 4.61742 4.82415 4.92963 4.97350 5.14238 5.27772 5.35270 5.59098 5.62603 5.72644 5.86476 5.89448 6.01923 6.11056 6.15192 6.40515 6.50289 6.67570 6.76157 6.85065 7.18514 7.30042 7.68229 7.93645 8.06179 8.54457 8.61937 9.24711 9.34129 10.74085 Molecular weight = 339.03amu Principal moments of inertia in cm(-1) A = 0.025924 B = 0.002790 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.803692 B =10032.942357 C =10586.205701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.071 3.929 3 Si 0.904 3.096 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.539 4.539 8 H 0.067 0.933 9 C 0.248 3.752 10 O -0.585 6.585 11 C -0.119 4.119 12 C 0.092 3.908 13 N -0.602 5.602 14 C 0.559 3.441 15 O -0.543 6.543 16 C -0.111 4.111 17 C -0.086 4.086 18 C -0.121 4.121 19 C -0.076 4.076 20 C -0.100 4.100 21 Br -0.050 7.050 22 C -0.038 4.038 23 C 0.103 3.897 24 H 0.271 0.729 25 H 0.385 0.615 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.150 0.850 31 H 0.138 0.862 32 H 0.134 0.866 33 H 0.143 0.857 34 H 0.068 0.932 35 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.013 -18.542 -7.605 20.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.133 4.133 3 Si 0.732 3.268 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.577 4.577 8 H 0.085 0.915 9 C 0.208 3.792 10 O -0.395 6.395 11 C -0.157 4.157 12 C -0.031 4.031 13 N -0.334 5.334 14 C 0.347 3.653 15 O -0.422 6.422 16 C -0.115 4.115 17 C -0.104 4.104 18 C -0.140 4.140 19 C -0.096 4.096 20 C -0.179 4.179 21 Br 0.035 6.965 22 C -0.059 4.059 23 C -0.018 4.018 24 H 0.081 0.919 25 H 0.236 0.764 26 H 0.097 0.903 27 H 0.097 0.903 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.167 0.833 31 H 0.155 0.845 32 H 0.152 0.848 33 H 0.160 0.840 34 H 0.087 0.913 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.770 -18.795 -8.599 20.744 hybrid contribution 0.042 1.532 0.203 1.546 sum 1.812 -17.263 -8.396 19.282 Atomic orbital electron populations 1.69636 1.06021 1.28065 1.49638 1.25080 0.95059 0.99834 0.93287 0.86387 0.79799 0.82327 0.78334 1.20387 1.20947 1.19652 1.21508 0.93725 0.90060 1.52447 0.91458 1.19490 0.86161 0.92175 0.81400 1.86087 1.51727 1.54914 1.46755 1.22793 0.97604 0.94925 1.00351 1.22706 0.93537 0.95849 0.90978 1.48775 1.49501 1.12951 1.22151 1.17812 0.80667 0.86077 0.80718 1.90775 1.38242 1.62174 1.51024 1.20087 1.03148 0.94501 0.93778 1.22146 0.94612 0.92958 1.00693 1.21147 1.00937 0.96000 0.95923 1.21265 0.96999 0.99190 0.92144 1.21668 1.09017 0.95959 0.91296 1.96713 1.97700 1.90205 1.11890 1.21190 0.94417 0.94015 0.96278 1.23162 1.01996 0.77456 0.99208 0.91881 0.76403 0.90344 0.90285 0.91154 0.91171 0.83306 0.84461 0.84773 0.83959 0.91317 0.91281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.37 10.96 55.43 0.61 -22.76 16 2 C 0.07 1.81 5.27 -17.82 -0.09 1.71 16 3 Si 0.90 20.10 29.54 -169.99 -5.02 15.08 16 4 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 6 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 7 C -0.54 -13.71 8.11 -34.44 -0.28 -13.99 16 8 H 0.07 1.68 7.77 -52.49 -0.41 1.27 16 9 C 0.25 5.77 0.85 -89.94 -0.08 5.69 16 10 O -0.59 -14.18 13.08 -35.23 -0.46 -14.64 16 11 C -0.12 -2.23 6.23 -24.58 -0.15 -2.38 16 12 C 0.09 1.50 5.01 -2.53 -0.01 1.48 16 13 N -0.60 -11.95 3.33 -171.39 -0.57 -12.52 16 14 C 0.56 11.03 7.65 -12.33 -0.09 10.93 16 15 O -0.54 -12.65 16.98 5.31 0.09 -12.56 16 16 C -0.11 -1.71 5.70 -104.97 -0.60 -2.31 16 17 C -0.09 -1.04 7.93 -39.18 -0.31 -1.36 16 18 C -0.12 -1.17 10.03 -39.65 -0.40 -1.57 16 19 C -0.08 -0.75 9.78 -39.47 -0.39 -1.14 16 20 C -0.10 -1.19 6.22 -39.57 -0.25 -1.43 16 21 Br -0.05 -0.53 33.69 -68.01 -2.29 -2.82 16 22 C -0.04 -0.55 9.33 -39.15 -0.37 -0.91 16 23 C 0.10 2.42 5.39 -2.90 -0.02 2.40 16 24 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 25 H 0.38 9.65 7.24 45.56 0.33 9.98 16 26 H 0.08 1.42 8.03 -51.93 -0.42 1.01 16 27 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 28 H 0.07 0.94 6.16 -51.93 -0.32 0.62 16 29 H 0.07 1.07 7.29 -51.93 -0.38 0.69 16 30 H 0.15 1.70 4.56 -52.49 -0.24 1.46 16 31 H 0.14 0.90 8.06 -52.48 -0.42 0.48 16 32 H 0.13 1.00 8.06 -52.48 -0.42 0.58 16 33 H 0.14 2.10 7.88 -52.49 -0.41 1.69 16 34 H 0.07 1.77 8.00 -51.93 -0.42 1.35 16 35 H 0.07 1.77 7.81 -51.93 -0.41 1.37 16 LS Contribution 313.72 15.07 4.73 4.73 Total: -1.00 -28.66 313.72 -9.02 -37.68 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -3.07 Total: 10.66 kcal Atomic # 6 Polarization: 0.18 SS G_CDS: -3.03 Total: -2.85 kcal Atomic # 7 Polarization: -35.31 SS G_CDS: 0.04 Total: -35.28 kcal Atomic # 8 Polarization: -26.83 SS G_CDS: -0.37 Total: -27.20 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Atomic # 35 Polarization: -0.53 SS G_CDS: -2.29 Total: -2.82 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -28.66 -9.02 -37.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592843532.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.853 kcal (2) G-P(sol) polarization free energy of solvation -28.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds