Wall clock time and date at job start Tue Mar 31 2020 22:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86805 * 119.99924 * 2 1 4 4 H 1.48500 * 109.47009 * 269.99924 * 3 2 1 5 5 H 1.48499 * 109.46793 * 29.99728 * 3 2 1 6 6 H 1.48499 * 109.47130 * 149.99997 * 3 2 1 7 7 C 1.37879 * 119.99988 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99322 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00177 * 0.27508 * 7 2 1 10 10 O 1.42908 * 110.64093 * 300.42554 * 9 7 2 11 11 C 1.55156 * 110.71873 * 177.28623 * 9 7 2 12 12 C 1.54914 * 101.57741 * 206.13310 * 11 9 7 13 13 N 1.47416 * 104.83367 * 37.01236 * 12 11 9 14 14 C 1.34782 * 125.65059 * 155.90703 * 13 12 11 15 15 O 1.21559 * 119.99796 * 176.29578 * 14 13 12 16 16 C 1.47844 * 119.99774 * 356.30097 * 14 13 12 17 17 C 1.39597 * 120.14216 * 27.17485 * 16 14 13 18 18 C 1.37940 * 119.86983 * 180.02562 * 17 16 14 19 19 C 1.38356 * 120.16083 * 0.02562 * 18 17 16 20 20 C 1.38428 * 120.28269 * 359.97438 * 19 18 17 21 21 Br 1.89099 * 119.93719 * 180.02562 * 20 19 18 22 22 C 1.38075 * 120.12315 * 359.72863 * 20 19 18 23 23 C 1.47320 * 108.73476 * 335.71176 * 13 12 11 24 24 H 0.96994 * 120.00066 * 0.02562 * 1 2 3 25 25 H 0.96703 * 113.99564 * 59.29836 * 10 9 7 26 26 H 1.08992 * 111.00693 * 324.20722 * 11 9 7 27 27 H 1.08998 * 111.00385 * 88.02804 * 11 9 7 28 28 H 1.09004 * 110.36485 * 155.84625 * 12 11 9 29 29 H 1.09003 * 110.36838 * 278.16703 * 12 11 9 30 30 H 1.07995 * 120.06024 * 0.03030 * 17 16 14 31 31 H 1.08007 * 119.91493 * 179.97438 * 18 17 16 32 32 H 1.08006 * 119.86050 * 180.02562 * 19 18 17 33 33 H 1.07998 * 120.08098 * 180.29626 * 22 20 19 34 34 H 1.09000 * 110.06615 * 241.87375 * 23 13 12 35 35 H 1.09004 * 109.85002 * 120.61597 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 -0.0051 10 8 0.4080 -2.5990 1.1443 11 6 2.2324 -3.6991 -0.0721 12 6 1.3502 -4.7854 -0.7366 13 7 0.5319 -4.0561 -1.7223 14 6 -0.0312 -4.5898 -2.8245 15 8 -0.7440 -3.9071 -3.5341 16 6 0.2180 -6.0054 -3.1703 17 6 0.5192 -6.9293 -2.1680 18 6 0.7512 -8.2486 -2.4971 19 6 0.6866 -8.6576 -3.8172 20 6 0.3884 -7.7469 -4.8163 21 35 0.3019 -8.3166 -6.6173 22 6 0.1481 -6.4247 -4.4995 23 6 0.4271 -2.6482 -1.3014 24 1 -0.4850 0.8400 -0.0004 25 1 -0.2490 -1.8927 1.2127 26 1 3.0962 -3.4633 -0.6936 27 1 2.5441 -4.0052 0.9265 28 1 1.9736 -5.5273 -1.2357 29 1 0.7122 -5.2632 0.0070 30 1 0.5703 -6.6116 -1.1371 31 1 0.9847 -8.9640 -1.7222 32 1 0.8687 -9.6919 -4.0693 33 1 -0.0891 -5.7158 -5.2789 34 1 -0.6148 -2.3917 -1.1098 35 1 0.8345 -1.9989 -2.0764 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592843532.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:04 Heat of formation + Delta-G solvation = -64.530914 kcal Electronic energy + Delta-G solvation = -21240.492728 eV Core-core repulsion = 17863.107211 eV Total energy + Delta-G solvation = -3377.385517 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 339.026 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.58184 -39.79840 -38.79389 -36.24334 -34.21914 -33.60306 -32.46970 -31.62347 -30.55053 -29.42908 -27.27786 -25.37616 -23.74036 -23.18627 -21.50920 -20.80404 -19.15582 -18.34350 -17.60470 -17.43430 -16.82114 -16.66194 -16.19072 -15.85614 -15.25203 -14.93174 -14.81657 -14.74545 -14.53324 -14.21667 -13.80283 -13.51823 -13.40542 -12.92613 -12.79457 -12.60794 -12.34593 -12.30438 -12.16933 -12.08417 -11.86798 -11.38845 -11.17459 -11.09678 -10.65973 -10.30825 -10.18144 -9.81596 -9.65339 -8.28804 -6.44601 -0.29448 0.05422 0.50676 1.40069 1.42568 1.51996 1.64915 1.95207 2.36600 2.59584 2.98042 3.34798 3.71947 3.77279 3.92729 4.01719 4.12150 4.18177 4.24313 4.31148 4.50675 4.55289 4.65127 4.75626 4.97055 5.02195 5.08344 5.15217 5.19044 5.23907 5.34163 5.47818 5.66047 5.72927 6.02666 6.51462 6.63740 7.00809 7.26392 7.34150 8.77255 Molecular weight = 339.03amu Principal moments of inertia in cm(-1) A = 0.025924 B = 0.002790 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.803692 B =10032.942357 C =10586.205701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.025 3.975 3 Si 0.963 3.037 4 H -0.280 1.280 5 H -0.282 1.282 6 H -0.263 1.263 7 C -0.558 4.558 8 H 0.069 0.931 9 C 0.234 3.766 10 O -0.586 6.586 11 C -0.114 4.114 12 C 0.097 3.903 13 N -0.606 5.606 14 C 0.554 3.446 15 O -0.596 6.596 16 C -0.134 4.134 17 C -0.083 4.083 18 C -0.103 4.103 19 C -0.061 4.061 20 C -0.106 4.106 21 Br -0.041 7.041 22 C -0.054 4.054 23 C 0.119 3.881 24 H 0.270 0.730 25 H 0.377 0.623 26 H 0.083 0.917 27 H 0.097 0.903 28 H 0.111 0.889 29 H 0.088 0.912 30 H 0.160 0.840 31 H 0.183 0.817 32 H 0.169 0.831 33 H 0.122 0.878 34 H 0.033 0.967 35 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.729 -21.827 -6.909 23.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.176 4.176 3 Si 0.788 3.212 4 H -0.206 1.206 5 H -0.207 1.207 6 H -0.187 1.187 7 C -0.596 4.596 8 H 0.087 0.913 9 C 0.193 3.807 10 O -0.394 6.394 11 C -0.151 4.151 12 C -0.024 4.024 13 N -0.337 5.337 14 C 0.344 3.656 15 O -0.478 6.478 16 C -0.138 4.138 17 C -0.101 4.101 18 C -0.121 4.121 19 C -0.081 4.081 20 C -0.186 4.186 21 Br 0.044 6.956 22 C -0.075 4.075 23 C -0.004 4.004 24 H 0.080 0.920 25 H 0.227 0.773 26 H 0.101 0.899 27 H 0.115 0.885 28 H 0.129 0.871 29 H 0.106 0.894 30 H 0.177 0.823 31 H 0.200 0.800 32 H 0.186 0.814 33 H 0.140 0.860 34 H 0.051 0.949 35 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 3.516 -22.119 -7.887 23.745 hybrid contribution -0.508 2.469 -0.074 2.522 sum 3.007 -19.651 -7.962 21.415 Atomic orbital electron populations 1.69747 1.07128 1.28529 1.50239 1.25820 0.95787 1.02850 0.93095 0.85479 0.78923 0.78772 0.78033 1.20640 1.20729 1.18747 1.21874 0.94043 0.91393 1.52325 0.91321 1.19697 0.86678 0.93699 0.80585 1.86073 1.51647 1.54479 1.47233 1.22800 0.96987 0.93506 1.01848 1.22941 0.93402 0.95434 0.90646 1.48803 1.50125 1.11705 1.23101 1.18628 0.79395 0.87866 0.79682 1.90728 1.40497 1.64067 1.52552 1.19728 1.06769 0.92108 0.95211 1.22279 0.94104 0.93586 1.00180 1.21607 0.98400 0.95263 0.96817 1.21747 0.94357 1.00246 0.91700 1.21798 1.08950 0.95265 0.92538 1.96727 1.97677 1.89725 1.11424 1.21070 0.95772 0.95070 0.95549 1.22655 0.99525 0.79546 0.98631 0.92035 0.77342 0.89859 0.88487 0.87144 0.89379 0.82289 0.79992 0.81400 0.86039 0.94900 0.94829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.76 10.96 21.45 0.24 -49.53 16 2 C 0.03 1.32 5.27 84.65 0.45 1.76 16 3 Si 0.96 41.83 29.54 68.60 2.03 43.85 16 4 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 5 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 6 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 7 C -0.56 -28.84 8.11 25.60 0.21 -28.64 16 8 H 0.07 3.44 7.77 -2.91 -0.02 3.41 16 9 C 0.23 11.04 0.85 -10.36 -0.01 11.03 16 10 O -0.59 -28.81 13.08 -148.98 -1.95 -30.75 16 11 C -0.11 -4.08 6.23 31.99 0.20 -3.88 16 12 C 0.10 2.94 5.01 86.86 0.44 3.37 16 13 N -0.61 -24.46 3.33 -814.43 -2.71 -27.17 16 14 C 0.55 22.56 7.65 86.79 0.66 23.22 16 15 O -0.60 -29.69 16.98 -3.90 -0.07 -29.76 16 16 C -0.13 -4.03 5.70 -20.09 -0.11 -4.14 16 17 C -0.08 -1.74 7.93 22.53 0.18 -1.56 16 18 C -0.10 -1.41 10.03 22.23 0.22 -1.19 16 19 C -0.06 -0.92 9.78 22.34 0.22 -0.70 16 20 C -0.11 -2.27 6.22 22.28 0.14 -2.13 16 21 Br -0.04 -0.79 33.69 -20.37 -0.69 -1.48 16 22 C -0.05 -1.51 9.33 22.55 0.21 -1.30 16 23 C 0.12 5.91 5.39 86.67 0.47 6.37 16 24 H 0.27 14.09 8.31 -92.71 -0.77 13.32 16 25 H 0.38 19.63 7.24 -74.06 -0.54 19.09 16 26 H 0.08 2.89 8.03 -2.39 -0.02 2.87 16 27 H 0.10 3.14 8.14 -2.39 -0.02 3.12 16 28 H 0.11 2.51 6.16 -2.39 -0.01 2.50 16 29 H 0.09 2.40 7.29 -2.39 -0.02 2.38 16 30 H 0.16 2.96 4.56 -2.91 -0.01 2.95 16 31 H 0.18 1.00 8.06 -2.91 -0.02 0.98 16 32 H 0.17 1.47 8.06 -2.91 -0.02 1.45 16 33 H 0.12 3.82 7.88 -2.91 -0.02 3.80 16 34 H 0.03 1.82 8.00 -2.39 -0.02 1.80 16 35 H 0.03 1.85 7.81 -2.38 -0.02 1.83 16 Total: -1.00 -66.99 313.72 0.71 -66.28 By element: Atomic # 1 Polarization: 25.75 SS G_CDS: 0.60 Total: 26.35 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: 3.27 Total: 2.22 kcal Atomic # 7 Polarization: -74.22 SS G_CDS: -2.48 Total: -76.70 kcal Atomic # 8 Polarization: -58.50 SS G_CDS: -2.01 Total: -60.52 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.85 kcal Atomic # 35 Polarization: -0.79 SS G_CDS: -0.69 Total: -1.48 kcal Total: -66.99 0.71 -66.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592843532.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.748 kcal (2) G-P(sol) polarization free energy of solvation -66.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds