Wall clock time and date at job start Tue Mar 31 2020 22:25:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46501 * 119.99769 * 2 1 4 4 C 1.53002 * 109.47223 * 270.00275 * 3 2 1 5 5 N 1.46897 * 109.47181 * 180.02562 * 4 3 2 6 6 C 1.46847 * 111.00044 * 45.78672 * 5 4 3 7 7 C 1.53037 * 109.52151 * 185.84033 * 6 5 4 8 8 C 1.53127 * 109.27994 * 300.82286 * 7 6 5 9 9 C 1.53113 * 109.16138 * 57.65393 * 8 7 6 10 10 C 1.46845 * 111.00219 * 170.00014 * 5 4 3 11 11 C 1.34775 * 120.00565 * 179.97438 * 2 1 3 12 12 O 1.21583 * 120.00558 * 179.97438 * 11 2 1 13 13 N 1.34777 * 119.99357 * 0.02562 * 11 2 1 14 14 C 1.46508 * 119.99722 * 179.97438 * 13 11 2 15 15 C 1.53040 * 109.45786 * 275.02320 * 14 13 11 16 16 C 1.53190 * 109.31115 * 178.60060 * 15 14 13 17 17 N 1.46928 * 108.76519 * 54.65439 * 16 15 14 18 18 C 1.36937 * 120.62762 * 126.40255 * 17 16 15 19 19 H 1.07992 * 120.00287 * 332.61208 * 18 17 16 20 20 C 1.38818 * 119.99724 * 152.61075 * 18 17 16 21 21 N 1.31618 * 119.99946 * 159.34567 * 20 18 17 22 22 Si 1.86800 * 120.00010 * 339.34369 * 20 18 17 23 23 H 1.48503 * 109.47207 * 92.94190 * 22 20 18 24 24 H 1.48504 * 109.47358 * 212.94462 * 22 20 18 25 25 H 1.48498 * 109.47230 * 332.94573 * 22 20 18 26 26 C 1.46923 * 118.74152 * 306.38619 * 17 16 15 27 27 C 1.53043 * 109.46056 * 154.96978 * 14 13 11 28 28 H 1.08996 * 109.47428 * 90.00118 * 1 2 3 29 29 H 1.09004 * 109.46669 * 209.99913 * 1 2 3 30 30 H 1.08998 * 109.47082 * 329.99407 * 1 2 3 31 31 H 1.08991 * 109.47396 * 150.00209 * 3 2 1 32 32 H 1.09003 * 109.47243 * 29.99885 * 3 2 1 33 33 H 1.08998 * 109.46900 * 60.00075 * 4 3 2 34 34 H 1.09003 * 109.46693 * 299.99947 * 4 3 2 35 35 H 1.08997 * 109.46046 * 65.82780 * 6 5 4 36 36 H 1.08998 * 109.46355 * 305.85723 * 6 5 4 37 37 H 1.09003 * 109.50649 * 180.88241 * 7 6 5 38 38 H 1.09004 * 109.50896 * 60.76181 * 7 6 5 39 39 H 1.08993 * 109.52234 * 177.56172 * 8 7 6 40 40 H 1.09000 * 109.52058 * 297.75083 * 8 7 6 41 41 H 1.09004 * 109.50390 * 62.28968 * 9 8 7 42 42 H 1.08994 * 109.50876 * 182.40663 * 9 8 7 43 43 H 1.09010 * 109.46284 * 54.14047 * 10 5 4 44 44 H 1.09005 * 109.45811 * 294.17952 * 10 5 4 45 45 H 0.96999 * 120.00750 * 359.97438 * 13 11 2 46 46 H 1.09003 * 109.45594 * 34.99805 * 14 13 11 47 47 H 1.08997 * 109.49980 * 298.56776 * 15 14 13 48 48 H 1.08997 * 109.49524 * 58.66366 * 15 14 13 49 49 H 1.09004 * 109.59780 * 294.86849 * 16 15 14 50 50 H 1.08999 * 109.70196 * 174.50477 * 16 15 14 51 51 H 0.96999 * 119.99698 * 179.97438 * 21 20 18 52 52 H 1.09006 * 109.58665 * 293.82196 * 26 17 16 53 53 H 1.08993 * 109.70742 * 173.46576 * 26 17 16 54 54 H 1.09003 * 109.49400 * 301.33424 * 27 14 13 55 55 H 1.09006 * 109.49638 * 61.39705 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4524 1.7105 -1.4425 5 7 3.1874 2.9824 -1.4425 6 6 4.3016 2.9463 -0.4867 7 6 4.9521 4.3293 -0.4071 8 6 5.4587 4.7304 -1.7954 9 6 4.2879 4.7132 -2.7819 10 6 3.6566 3.3191 -2.7926 11 6 2.1390 -1.1671 0.0005 12 8 3.3549 -1.1671 0.0001 13 7 1.4651 -2.3343 0.0005 14 6 2.1977 -3.6031 0.0005 15 6 2.5620 -3.9814 -1.4369 16 6 3.3580 -5.2902 -1.4301 17 7 2.5808 -6.3123 -0.7158 18 6 2.3083 -7.5187 -1.3036 19 1 2.2501 -7.5944 -2.3793 20 6 2.1070 -8.6444 -0.5167 21 7 1.4623 -9.6825 -1.0057 22 14 2.7510 -8.6860 1.2363 23 1 1.6871 -8.2280 2.1656 24 1 3.1490 -10.0736 1.5847 25 1 3.9290 -7.7893 1.3522 26 6 2.1019 -6.0156 0.6411 27 6 1.3204 -4.6984 0.6110 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8899 0.5139 31 1 3.1499 1.1385 0.5137 32 1 1.6084 2.0284 0.5138 33 1 1.5000 1.8408 -1.9563 34 1 3.0415 0.9509 -1.9563 35 1 5.0402 2.2161 -0.8173 36 1 3.9272 2.6640 0.4972 37 1 5.7890 4.2983 0.2906 38 1 4.2178 5.0578 -0.0633 39 1 5.8840 5.7330 -1.7523 40 1 6.2214 4.0239 -2.1229 41 1 3.5430 5.4476 -2.4755 42 1 4.6500 4.9563 -3.7808 43 1 2.8135 3.3075 -3.4836 44 1 4.3982 2.5870 -3.1124 45 1 0.4951 -2.3344 0.0005 46 1 3.1084 -3.4965 0.5900 47 1 1.6510 -4.1125 -2.0207 48 1 3.1673 -3.1901 -1.8791 49 1 4.3110 -5.1360 -0.9240 50 1 3.5369 -5.6169 -2.4545 51 1 1.3220 -10.4692 -0.4559 52 1 2.9525 -5.9204 1.3161 53 1 1.4507 -6.8191 0.9850 54 1 1.0418 -4.4174 1.6267 55 1 0.4207 -4.8222 0.0081 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593337100.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:46 Heat of formation + Delta-G solvation = -20.401204 kcal Electronic energy + Delta-G solvation = -30600.434169 eV Core-core repulsion = 26672.024572 eV Total energy + Delta-G solvation = -3928.409597 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.48771 -40.07500 -39.33783 -36.90008 -36.09277 -34.74462 -33.93022 -32.03631 -31.96315 -31.68107 -29.73047 -27.59921 -26.74334 -25.48945 -24.50275 -24.00526 -23.54846 -22.54052 -21.27392 -20.83267 -20.60039 -19.25825 -18.57702 -17.89184 -17.38735 -16.87123 -16.53710 -16.06553 -15.96488 -15.81223 -15.57310 -15.38528 -15.30792 -15.07797 -14.77608 -14.61351 -14.45169 -14.27496 -14.08163 -13.98148 -13.88160 -13.67338 -13.46805 -13.29522 -13.09357 -12.78606 -12.59968 -12.53551 -12.29224 -12.17545 -12.07138 -12.01084 -11.79942 -11.59671 -11.57714 -11.39826 -11.30691 -11.24659 -11.22702 -10.71989 -10.17549 -9.54925 -9.39684 -8.98251 -8.16713 -5.49261 1.28998 1.42657 1.51283 1.57537 2.11597 2.41006 2.78777 3.04821 3.09029 3.31763 3.75393 3.81404 3.87250 3.94176 3.97036 4.07238 4.08332 4.21215 4.26738 4.29810 4.32077 4.45778 4.46429 4.46821 4.55877 4.60133 4.61475 4.65985 4.67374 4.72962 4.82935 4.86945 4.88410 4.90651 4.91587 4.94877 5.00833 5.04819 5.05132 5.07309 5.14020 5.22076 5.25593 5.36688 5.45521 5.50337 5.55301 5.85775 5.90373 6.03227 6.06398 6.12122 6.89392 6.95834 7.54785 7.60116 8.00902 9.02961 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.023197 B = 0.002119 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.742956 B =13208.814536 C =13513.474910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.630 5.630 3 C 0.135 3.865 4 C 0.048 3.952 5 N -0.529 5.529 6 C 0.045 3.955 7 C -0.113 4.113 8 C -0.124 4.124 9 C -0.111 4.111 10 C 0.051 3.949 11 C 0.699 3.301 12 O -0.633 6.633 13 N -0.727 5.727 14 C 0.179 3.821 15 C -0.126 4.126 16 C 0.148 3.852 17 N -0.618 5.618 18 C -0.249 4.249 19 H 0.053 0.947 20 C -0.034 4.034 21 N -0.955 5.955 22 Si 0.944 3.056 23 H -0.267 1.267 24 H -0.311 1.311 25 H -0.267 1.267 26 C 0.122 3.878 27 C -0.126 4.126 28 H 0.064 0.936 29 H 0.077 0.923 30 H 0.099 0.901 31 H 0.065 0.935 32 H 0.111 0.889 33 H 0.087 0.913 34 H 0.006 0.994 35 H 0.011 0.989 36 H 0.083 0.917 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.048 0.952 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.080 0.920 44 H 0.016 0.984 45 H 0.409 0.591 46 H 0.065 0.935 47 H 0.062 0.938 48 H 0.058 0.942 49 H 0.027 0.973 50 H 0.058 0.942 51 H 0.262 0.738 52 H 0.031 0.969 53 H 0.060 0.940 54 H 0.090 0.910 55 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.759 32.982 2.772 33.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.367 5.367 3 C 0.011 3.989 4 C -0.081 4.081 5 N -0.254 5.254 6 C -0.083 4.083 7 C -0.150 4.150 8 C -0.162 4.162 9 C -0.149 4.149 10 C -0.077 4.077 11 C 0.400 3.600 12 O -0.515 6.515 13 N -0.383 5.383 14 C 0.073 3.927 15 C -0.166 4.166 16 C 0.022 3.978 17 N -0.343 5.343 18 C -0.378 4.378 19 H 0.070 0.930 20 C -0.228 4.228 21 N -0.601 5.601 22 Si 0.773 3.227 23 H -0.193 1.193 24 H -0.240 1.240 25 H -0.191 1.191 26 C -0.004 4.004 27 C -0.165 4.165 28 H 0.083 0.917 29 H 0.095 0.905 30 H 0.118 0.882 31 H 0.084 0.916 32 H 0.129 0.871 33 H 0.106 0.894 34 H 0.024 0.976 35 H 0.030 0.970 36 H 0.101 0.899 37 H 0.091 0.909 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.067 0.933 41 H 0.094 0.906 42 H 0.095 0.905 43 H 0.099 0.901 44 H 0.034 0.966 45 H 0.247 0.753 46 H 0.083 0.917 47 H 0.081 0.919 48 H 0.077 0.923 49 H 0.045 0.955 50 H 0.076 0.924 51 H 0.071 0.929 52 H 0.049 0.951 53 H 0.078 0.922 54 H 0.108 0.892 55 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.281 33.213 2.942 33.368 hybrid contribution 0.609 -1.688 0.065 1.795 sum -0.673 31.525 3.007 31.676 Atomic orbital electron populations 1.22022 0.77121 1.04774 1.03011 1.47059 1.07958 1.03918 1.77741 1.21484 0.97611 0.83711 0.96061 1.22404 0.98658 0.89215 0.97805 1.62112 1.25211 1.30384 1.07720 1.22265 0.91704 0.97474 0.96815 1.21584 1.00242 0.95715 0.97503 1.21614 0.97524 1.01882 0.95172 1.21559 0.97711 0.95705 0.99887 1.22169 0.98716 0.97131 0.89635 1.16121 0.84955 0.81359 0.77555 1.90885 1.13727 1.86930 1.59935 1.45262 1.10287 1.03716 1.79027 1.20509 0.94824 0.81409 0.95946 1.22185 1.00482 0.96911 0.97028 1.20991 0.92611 0.87853 0.96317 1.44506 1.61256 1.13746 1.14808 1.18847 1.41590 0.85385 0.91981 0.92967 1.25890 0.99781 0.95162 1.02009 1.69959 1.43406 1.07414 1.39278 0.85950 0.79749 0.75354 0.81634 1.19340 1.23990 1.19148 1.21369 0.96363 0.96351 0.86282 1.22155 0.98789 0.93747 1.01848 0.91699 0.90485 0.88237 0.91626 0.87113 0.89445 0.97580 0.97021 0.89913 0.90888 0.90427 0.90370 0.93270 0.90567 0.90519 0.90149 0.96557 0.75332 0.91687 0.91939 0.92335 0.95472 0.92370 0.92886 0.95105 0.92179 0.89181 0.90779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.76 10.25 127.77 1.31 2.07 16 2 N -0.63 -12.16 2.87 -864.91 -2.49 -14.65 16 3 C 0.13 2.43 4.70 86.38 0.41 2.84 16 4 C 0.05 0.92 5.60 86.30 0.48 1.40 16 5 N -0.53 -9.15 4.81 -896.35 -4.31 -13.46 16 6 C 0.05 0.80 4.85 86.33 0.42 1.22 16 7 C -0.11 -1.50 6.09 30.65 0.19 -1.31 16 8 C -0.12 -1.56 6.00 30.67 0.18 -1.37 16 9 C -0.11 -1.36 6.09 30.64 0.19 -1.18 16 10 C 0.05 0.83 5.42 86.33 0.47 1.30 16 11 C 0.70 19.43 8.24 179.05 1.48 20.91 16 12 O -0.63 -23.47 15.58 -3.98 -0.06 -23.53 16 13 N -0.73 -18.20 4.94 -457.67 -2.26 -20.46 16 14 C 0.18 5.61 2.42 45.02 0.11 5.72 16 15 C -0.13 -4.35 5.65 30.67 0.17 -4.17 16 16 C 0.15 6.07 6.52 86.36 0.56 6.63 16 17 N -0.62 -29.38 2.77 -699.11 -1.94 -31.32 16 18 C -0.25 -14.16 10.04 84.03 0.84 -13.31 16 19 H 0.05 3.25 8.06 -2.91 -0.02 3.23 16 20 C -0.03 -1.96 5.23 84.86 0.44 -1.52 16 21 N -0.95 -59.76 13.97 21.65 0.30 -59.45 16 22 Si 0.94 46.44 24.35 68.60 1.67 48.11 16 23 H -0.27 -12.10 6.62 99.48 0.66 -11.44 16 24 H -0.31 -15.60 7.11 99.48 0.71 -14.89 16 25 H -0.27 -12.83 6.63 99.48 0.66 -12.17 16 26 C 0.12 5.06 4.20 86.36 0.36 5.42 16 27 C -0.13 -3.96 5.55 30.67 0.17 -3.79 16 28 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.08 0.69 6.36 -2.38 -0.02 0.67 16 30 H 0.10 0.59 7.89 -2.39 -0.02 0.57 16 31 H 0.07 1.50 5.48 -2.39 -0.01 1.49 16 32 H 0.11 1.38 7.89 -2.39 -0.02 1.36 16 33 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.01 0.15 8.08 -2.39 -0.02 0.13 16 35 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 36 H 0.08 1.40 5.81 -2.39 -0.01 1.39 16 37 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 43 H 0.08 1.17 8.12 -2.38 -0.02 1.15 16 44 H 0.02 0.32 8.14 -2.38 -0.02 0.30 16 45 H 0.41 7.64 6.33 -92.71 -0.59 7.05 16 46 H 0.06 2.32 7.58 -2.39 -0.02 2.31 16 47 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 48 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 49 H 0.03 1.11 8.14 -2.38 -0.02 1.09 16 50 H 0.06 2.42 7.93 -2.39 -0.02 2.40 16 51 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 52 H 0.03 1.27 7.08 -2.38 -0.02 1.26 16 53 H 0.06 2.71 4.50 -2.39 -0.01 2.70 16 54 H 0.09 2.32 8.14 -2.39 -0.02 2.31 16 55 H 0.07 2.30 8.14 -2.38 -0.02 2.28 16 Total: -1.00 -73.61 408.06 -1.13 -74.73 By element: Atomic # 1 Polarization: 19.01 SS G_CDS: 0.17 Total: 19.18 kcal Atomic # 6 Polarization: 13.06 SS G_CDS: 7.78 Total: 20.84 kcal Atomic # 7 Polarization: -128.65 SS G_CDS: -10.69 Total: -139.34 kcal Atomic # 8 Polarization: -23.47 SS G_CDS: -0.06 Total: -23.53 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 1.67 Total: 48.11 kcal Total: -73.61 -1.13 -74.73 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593337100.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.334 kcal (2) G-P(sol) polarization free energy of solvation -73.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds