Wall clock time and date at job start Tue Mar 31 2020 22:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47150 * 2 1 4 4 C 1.53000 * 109.47282 * 120.00018 * 2 1 3 5 5 N 1.46904 * 109.46748 * 176.34728 * 4 2 1 6 6 C 1.46951 * 110.99904 * 75.85178 * 5 4 2 7 7 C 1.53052 * 109.36256 * 183.18291 * 6 5 4 8 8 N 1.46954 * 109.36789 * 301.59719 * 7 6 5 9 9 C 1.46892 * 111.00154 * 183.18544 * 8 7 6 10 10 C 1.46961 * 110.87883 * 59.32174 * 8 7 6 11 11 C 1.46959 * 110.99661 * 199.64997 * 5 4 2 12 12 N 1.46505 * 109.46768 * 240.00021 * 2 1 3 13 13 C 1.34784 * 119.99976 * 84.09622 * 12 2 1 14 14 O 1.21588 * 119.99586 * 354.80209 * 13 12 2 15 15 N 1.34768 * 119.99867 * 174.80525 * 13 12 2 16 16 C 1.46921 * 120.63404 * 5.06523 * 15 13 12 17 17 C 1.53194 * 108.77610 * 126.36479 * 16 15 13 18 18 C 1.53041 * 109.31158 * 54.63770 * 17 16 15 19 19 C 1.53038 * 109.53553 * 298.63444 * 18 17 16 20 20 H 1.09001 * 109.49678 * 301.41187 * 19 18 17 21 21 C 1.50701 * 109.49436 * 181.31812 * 19 18 17 22 22 H 1.08005 * 120.00016 * 359.97438 * 21 19 18 23 23 C 1.37875 * 119.99765 * 179.97438 * 21 19 18 24 24 N 1.31516 * 120.00213 * 359.97438 * 23 21 19 25 25 Si 1.86808 * 119.99835 * 179.97438 * 23 21 19 26 26 H 1.48510 * 109.46719 * 90.00118 * 25 23 21 27 27 H 1.48500 * 109.47220 * 209.99660 * 25 23 21 28 28 H 1.48491 * 109.47325 * 330.00453 * 25 23 21 29 29 C 1.46925 * 120.62919 * 184.78334 * 15 13 12 30 30 H 1.08991 * 109.47186 * 60.00052 * 1 2 3 31 31 H 1.09001 * 109.47150 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46890 * 299.99586 * 1 2 3 33 33 H 1.08997 * 109.46742 * 56.35096 * 4 2 1 34 34 H 1.08997 * 109.47273 * 296.34996 * 4 2 1 35 35 H 1.08999 * 109.49126 * 63.22082 * 6 5 4 36 36 H 1.08992 * 109.50725 * 303.16414 * 6 5 4 37 37 H 1.09001 * 109.48568 * 181.62777 * 7 6 5 38 38 H 1.09004 * 109.48678 * 61.57057 * 7 6 5 39 39 H 1.09008 * 109.47425 * 60.00286 * 9 8 7 40 40 H 1.08997 * 109.47627 * 300.00461 * 9 8 7 41 41 H 1.09001 * 109.47230 * 180.02562 * 9 8 7 42 42 H 1.08999 * 109.49079 * 60.64322 * 10 8 7 43 43 H 1.08992 * 109.48931 * 180.71202 * 10 8 7 44 44 H 1.09004 * 109.49190 * 296.78098 * 11 5 4 45 45 H 1.08999 * 109.48923 * 56.82480 * 11 5 4 46 46 H 0.97001 * 120.00255 * 264.08949 * 12 2 1 47 47 H 1.09003 * 109.59069 * 246.15688 * 16 15 13 48 48 H 1.09003 * 109.58578 * 6.43598 * 16 15 13 49 49 H 1.09005 * 109.49680 * 174.58923 * 17 16 15 50 50 H 1.08996 * 109.50271 * 294.68206 * 17 16 15 51 51 H 1.09004 * 109.45856 * 58.65764 * 18 17 16 52 52 H 1.08996 * 109.45928 * 178.62215 * 18 17 16 53 53 H 0.96998 * 119.99818 * 179.97438 * 24 23 21 54 54 H 1.09000 * 109.58586 * 353.41719 * 29 15 13 55 55 H 1.08996 * 109.58824 * 113.84381 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.5064 -0.7981 1.2058 6 6 4.1118 0.4997 1.5357 7 6 5.6331 0.3987 1.4021 8 7 6.1320 -0.6546 2.2973 9 6 7.5982 -0.7315 2.2539 10 6 5.5266 -1.9525 1.9674 11 6 4.0053 -1.8514 2.1010 12 7 2.0183 -0.6906 -1.1962 13 6 2.1297 -0.0228 -2.3617 14 8 1.7369 1.1249 -2.4446 15 7 2.6763 -0.6272 -3.4350 16 6 3.0538 -2.0462 -3.3837 17 6 2.3897 -2.7758 -4.5556 18 6 2.7601 -2.0739 -5.8642 19 6 2.2431 -0.6337 -5.8364 20 1 1.1621 -0.6378 -5.6966 21 6 2.5800 0.0467 -7.1382 22 1 3.1102 -0.4936 -7.9086 23 6 2.2112 1.3589 -7.3458 24 7 1.5651 2.0167 -6.4079 25 14 2.6294 2.2026 -8.9592 26 1 1.5211 1.9982 -9.9264 27 1 2.8185 3.6564 -8.7231 28 1 3.8807 1.6237 -9.5107 29 6 2.9004 0.1187 -4.6808 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.6243 -1.7283 1.2825 34 1 1.7312 -0.1711 2.1380 35 1 3.8539 0.7717 2.5592 36 1 3.7364 1.2608 0.8517 37 1 6.0861 1.3520 1.6743 38 1 5.8922 0.1535 0.3721 39 1 8.0216 0.2229 2.5672 40 1 7.9205 -0.9555 1.2371 41 1 7.9408 -1.5191 2.9250 42 1 5.7845 -2.2244 0.9439 43 1 5.9020 -2.7132 2.6517 44 1 3.7462 -1.6062 3.1310 45 1 3.5520 -2.8046 1.8290 46 1 2.2615 -1.6285 -1.1495 47 1 4.1371 -2.1393 -3.4620 48 1 2.7170 -2.4801 -2.4422 49 1 2.7377 -3.8084 -4.5855 50 1 1.3074 -2.7599 -4.4279 51 1 3.8440 -2.0686 -5.9792 52 1 2.3087 -2.6055 -6.7018 53 1 1.3061 2.9399 -6.5539 54 1 2.4600 1.1122 -4.5961 55 1 3.9708 0.2059 -4.8671 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595552004.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:17 Heat of formation + Delta-G solvation = -38.000229 kcal Electronic energy + Delta-G solvation = -31647.979241 eV Core-core repulsion = 27718.806493 eV Total energy + Delta-G solvation = -3929.172748 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.30423 -40.25100 -38.63436 -37.29353 -35.48996 -35.10260 -33.50853 -31.95338 -31.83816 -31.15730 -29.49520 -27.01465 -26.43131 -25.88642 -24.69128 -24.02626 -23.43106 -22.24291 -21.33613 -20.72804 -20.33325 -18.99734 -18.17955 -17.39240 -17.24206 -16.58792 -16.18952 -16.12443 -15.92576 -15.82952 -15.58762 -15.37346 -15.18028 -15.12541 -14.94691 -14.45933 -14.28223 -14.09221 -13.89649 -13.52592 -13.47300 -13.37656 -13.14649 -12.96979 -12.87921 -12.76308 -12.61253 -12.51686 -12.25327 -12.23391 -12.21500 -12.09787 -11.82616 -11.70305 -11.60941 -11.44767 -11.13388 -10.92181 -10.77077 -10.49497 -9.99225 -9.43103 -9.22651 -9.16066 -8.07858 -6.25862 1.40398 1.41604 1.52506 1.92128 2.38969 2.43111 2.83855 2.97689 3.15411 3.25013 3.78581 3.89037 4.07568 4.08392 4.16745 4.20210 4.22252 4.30670 4.34401 4.37550 4.48836 4.52271 4.60635 4.61910 4.62650 4.67851 4.72529 4.77338 4.82042 4.84510 4.85222 4.88737 4.90033 4.98943 5.01842 5.08001 5.09273 5.12151 5.28935 5.30891 5.32589 5.36728 5.58187 5.71598 5.76029 5.92974 5.94847 5.97457 6.03280 6.15792 6.18796 6.26997 6.40620 6.87751 7.29241 7.44084 7.84921 8.94941 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.013524 B = 0.002912 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.915661 B = 9612.710106 C = 9954.235957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.167 3.833 3 H 0.049 0.951 4 C 0.060 3.940 5 N -0.547 5.547 6 C 0.063 3.937 7 C 0.061 3.939 8 N -0.551 5.551 9 C 0.025 3.975 10 C 0.055 3.945 11 C 0.061 3.939 12 N -0.712 5.712 13 C 0.695 3.305 14 O -0.644 6.644 15 N -0.629 5.629 16 C 0.116 3.884 17 C -0.125 4.125 18 C -0.104 4.104 19 C 0.039 3.961 20 H -0.017 1.017 21 C -0.536 4.536 22 H 0.062 0.938 23 C 0.008 3.992 24 N -0.914 5.914 25 Si 0.958 3.042 26 H -0.275 1.275 27 H -0.288 1.288 28 H -0.261 1.261 29 C 0.147 3.853 30 H 0.024 0.976 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.104 0.896 34 H 0.066 0.934 35 H 0.047 0.953 36 H 0.059 0.941 37 H 0.081 0.919 38 H 0.022 0.978 39 H 0.071 0.929 40 H 0.020 0.980 41 H 0.082 0.918 42 H 0.031 0.969 43 H 0.096 0.904 44 H 0.044 0.956 45 H 0.099 0.901 46 H 0.405 0.595 47 H 0.072 0.928 48 H 0.098 0.902 49 H 0.103 0.897 50 H 0.048 0.952 51 H 0.055 0.945 52 H 0.051 0.949 53 H 0.258 0.742 54 H 0.074 0.926 55 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.841 -12.949 22.038 26.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.061 3.939 3 H 0.068 0.932 4 C -0.068 4.068 5 N -0.272 5.272 6 C -0.065 4.065 7 C -0.068 4.068 8 N -0.276 5.276 9 C -0.123 4.123 10 C -0.073 4.073 11 C -0.067 4.067 12 N -0.370 5.370 13 C 0.396 3.604 14 O -0.526 6.526 15 N -0.365 5.365 16 C -0.006 4.006 17 C -0.163 4.163 18 C -0.142 4.142 19 C 0.020 3.980 20 H 0.001 0.999 21 C -0.575 4.575 22 H 0.080 0.920 23 C -0.191 4.191 24 N -0.552 5.552 25 Si 0.783 3.217 26 H -0.201 1.201 27 H -0.214 1.214 28 H -0.185 1.185 29 C 0.023 3.977 30 H 0.044 0.956 31 H 0.093 0.907 32 H 0.102 0.898 33 H 0.122 0.878 34 H 0.084 0.916 35 H 0.065 0.935 36 H 0.078 0.922 37 H 0.099 0.901 38 H 0.040 0.960 39 H 0.090 0.910 40 H 0.038 0.962 41 H 0.101 0.899 42 H 0.049 0.951 43 H 0.114 0.886 44 H 0.062 0.938 45 H 0.117 0.883 46 H 0.243 0.757 47 H 0.090 0.910 48 H 0.116 0.884 49 H 0.122 0.878 50 H 0.067 0.933 51 H 0.074 0.926 52 H 0.069 0.931 53 H 0.067 0.933 54 H 0.092 0.908 55 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 6.528 -11.970 22.051 25.926 hybrid contribution 0.081 0.929 -1.344 1.636 sum 6.609 -11.041 20.707 24.380 Atomic orbital electron populations 1.22109 0.94987 1.02801 1.01680 1.20767 0.93511 0.95908 0.83681 0.93242 1.22353 0.87093 1.02263 0.95105 1.62019 1.06239 1.05661 1.53281 1.22054 0.93843 0.91437 0.99206 1.22075 0.94862 0.95776 0.94059 1.62241 1.07439 1.05941 1.51971 1.22385 0.86507 1.03303 1.00111 1.22238 0.94453 0.90903 0.99675 1.22222 0.94354 0.95380 0.94699 1.44912 1.71063 1.14131 1.06891 1.16201 0.78496 0.84241 0.81414 1.90871 1.57120 1.20000 1.84612 1.47617 1.64571 1.12056 1.12277 1.21745 0.99888 0.79502 0.99482 1.21903 1.00110 0.99941 0.94334 1.21494 1.00092 0.95559 0.97018 1.18822 0.93574 0.92728 0.92896 0.99886 1.21523 1.37334 0.97382 1.01260 0.92003 1.25923 0.94793 0.98466 0.99925 1.70123 1.39768 1.10738 1.34592 0.85561 0.78964 0.77376 0.79793 1.20084 1.21390 1.18539 1.21391 0.96991 0.97625 0.81658 0.95632 0.90731 0.89848 0.87803 0.91607 0.93474 0.92233 0.90060 0.96012 0.91039 0.96161 0.89907 0.95086 0.88589 0.93776 0.88270 0.75667 0.90987 0.88404 0.87839 0.93285 0.92596 0.93051 0.93264 0.90807 0.95384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.81 9.47 71.98 0.68 -3.13 16 2 C 0.17 4.27 2.55 44.99 0.11 4.39 16 3 H 0.05 1.60 6.56 -2.39 -0.02 1.59 16 4 C 0.06 0.99 4.54 86.30 0.39 1.38 16 5 N -0.55 -10.03 4.39 -895.72 -3.94 -13.96 16 6 C 0.06 1.32 5.43 86.31 0.47 1.79 16 7 C 0.06 1.26 5.62 86.31 0.49 1.74 16 8 N -0.55 -9.65 4.97 -921.95 -4.58 -14.23 16 9 C 0.02 0.36 9.60 127.69 1.23 1.59 16 10 C 0.06 0.82 5.62 86.31 0.49 1.31 16 11 C 0.06 0.83 5.56 86.31 0.48 1.31 16 12 N -0.71 -21.19 4.75 -457.79 -2.17 -23.36 16 13 C 0.70 29.85 8.25 179.05 1.48 31.33 16 14 O -0.64 -35.09 15.34 -3.99 -0.06 -35.15 16 15 N -0.63 -26.50 2.98 -837.76 -2.49 -29.00 16 16 C 0.12 3.46 6.39 86.36 0.55 4.01 16 17 C -0.12 -3.79 6.08 30.67 0.19 -3.61 16 18 C -0.10 -4.14 5.11 30.62 0.16 -3.98 16 19 C 0.04 2.05 2.24 -11.61 -0.03 2.03 16 20 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 21 C -0.54 -30.45 8.56 25.60 0.22 -30.23 16 22 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 23 C 0.01 0.48 5.30 84.65 0.45 0.93 16 24 N -0.91 -57.48 11.39 21.45 0.24 -57.24 16 25 Si 0.96 45.42 29.54 68.60 2.03 47.45 16 26 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 27 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 28 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 29 C 0.15 7.68 5.39 86.22 0.46 8.15 16 30 H 0.02 0.84 7.99 -2.39 -0.02 0.82 16 31 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.10 1.23 7.84 -2.39 -0.02 1.21 16 34 H 0.07 0.94 7.99 -2.39 -0.02 0.92 16 35 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.06 1.52 6.87 -2.39 -0.02 1.51 16 37 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.02 0.54 8.14 -2.39 -0.02 0.52 16 39 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 40 H 0.02 0.32 8.14 -2.39 -0.02 0.30 16 41 H 0.08 0.93 8.13 -2.39 -0.02 0.91 16 42 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 43 H 0.10 1.07 8.13 -2.39 -0.02 1.05 16 44 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 45 H 0.10 0.98 8.00 -2.39 -0.02 0.96 16 46 H 0.40 9.55 6.08 -92.71 -0.56 8.98 16 47 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 48 H 0.10 2.17 5.64 -2.39 -0.01 2.16 16 49 H 0.10 2.28 8.14 -2.38 -0.02 2.26 16 50 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 51 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 52 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 53 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 54 H 0.07 4.65 5.11 -2.39 -0.01 4.63 16 55 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -77.88 415.06 -2.88 -80.77 By element: Atomic # 1 Polarization: 25.45 SS G_CDS: 0.28 Total: 25.73 kcal Atomic # 6 Polarization: 11.19 SS G_CDS: 7.81 Total: 19.00 kcal Atomic # 7 Polarization: -124.85 SS G_CDS: -12.94 Total: -137.79 kcal Atomic # 8 Polarization: -35.09 SS G_CDS: -0.06 Total: -35.15 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Total: -77.88 -2.88 -80.77 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595552004.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.766 kcal (2) G-P(sol) polarization free energy of solvation -77.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds