Wall clock time and date at job start Tue Mar 31 2020 22:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 109.50448 * 2 1 4 4 C 1.53125 * 109.50391 * 239.92856 * 2 1 3 5 5 C 1.53116 * 109.15958 * 182.36366 * 4 2 1 6 6 C 1.53041 * 109.28208 * 57.65308 * 5 4 2 7 7 N 1.46848 * 109.52200 * 300.82176 * 6 5 4 8 8 C 1.46903 * 110.99859 * 185.83720 * 7 6 5 9 9 C 1.53001 * 109.46825 * 66.04335 * 8 7 6 10 10 N 1.46502 * 109.46426 * 179.97438 * 9 8 7 11 11 C 1.34782 * 119.99524 * 180.02562 * 10 9 8 12 12 O 1.21585 * 120.00368 * 354.85704 * 11 10 9 13 13 N 1.34774 * 119.99828 * 174.86307 * 11 10 9 14 14 C 1.47081 * 120.88026 * 174.74408 * 13 11 10 15 15 C 1.53246 * 108.52083 * 128.79282 * 14 13 11 16 16 N 1.46901 * 109.36132 * 53.81745 * 15 14 13 17 17 C 1.46898 * 111.00229 * 172.76121 * 16 15 14 18 18 C 1.50697 * 109.47035 * 64.61719 * 17 16 15 19 19 H 1.08001 * 119.99952 * 2.78314 * 18 17 16 20 20 C 1.37877 * 120.00116 * 182.78444 * 18 17 16 21 21 N 1.31522 * 119.99693 * 0.02562 * 20 18 17 22 22 Si 1.86791 * 120.00340 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47072 * 60.00100 * 22 20 18 24 24 H 1.48497 * 109.47489 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47532 * 300.00484 * 22 20 18 26 26 C 1.46901 * 111.26987 * 296.93820 * 16 15 14 27 27 C 1.47082 * 120.88500 * 354.72223 * 13 11 10 28 28 C 1.46846 * 111.19805 * 61.73798 * 7 6 5 29 29 H 1.08996 * 109.46681 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46970 * 300.07618 * 1 2 3 31 31 H 1.09001 * 109.47136 * 60.07399 * 1 2 3 32 32 H 1.08999 * 109.52447 * 62.45914 * 4 2 1 33 33 H 1.09001 * 109.52035 * 302.26510 * 4 2 1 34 34 H 1.09002 * 109.50794 * 297.71220 * 5 4 2 35 35 H 1.09002 * 109.50488 * 177.59239 * 5 4 2 36 36 H 1.08999 * 109.46734 * 180.80053 * 6 5 4 37 37 H 1.09009 * 109.44976 * 60.82750 * 6 5 4 38 38 H 1.08996 * 109.47019 * 306.04583 * 8 7 6 39 39 H 1.08995 * 109.46541 * 186.04494 * 8 7 6 40 40 H 1.08996 * 109.47119 * 60.00310 * 9 8 7 41 41 H 1.08993 * 109.47227 * 299.99703 * 9 8 7 42 42 H 0.96994 * 120.00569 * 0.02562 * 10 9 8 43 43 H 1.08997 * 109.62914 * 9.08579 * 14 13 11 44 44 H 1.09003 * 109.78963 * 248.59662 * 14 13 11 45 45 H 1.08991 * 109.49390 * 173.78504 * 15 14 13 46 46 H 1.08999 * 109.49231 * 293.85004 * 15 14 13 47 47 H 1.09001 * 109.47280 * 184.62079 * 17 16 15 48 48 H 1.09005 * 109.46680 * 304.61714 * 17 16 15 49 49 H 0.96999 * 119.99623 * 180.02562 * 21 20 18 50 50 H 1.08999 * 109.47237 * 303.10082 * 26 16 15 51 51 H 1.09001 * 109.51223 * 183.05120 * 26 16 15 52 52 H 1.09003 * 109.62250 * 350.91956 * 27 13 11 53 53 H 1.09003 * 109.62523 * 111.29870 * 27 13 11 54 54 H 1.08997 * 109.46439 * 58.27593 * 28 7 6 55 55 H 1.08998 * 109.46025 * 178.24736 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0412 -0.7232 -1.2491 5 6 3.5712 -0.7705 -1.2116 6 6 4.0239 -1.4715 0.0713 7 7 3.5101 -0.7412 1.2371 8 6 4.0389 -1.3049 2.4863 9 6 5.5502 -1.0753 2.5499 10 7 6.0774 -1.6370 3.7960 11 6 7.3943 -1.5509 4.0699 12 8 8.1585 -1.0918 3.2432 13 7 7.8640 -1.9739 5.2603 14 6 9.3083 -1.9961 5.5371 15 6 9.5611 -1.2702 6.8628 16 7 8.7187 -1.8622 7.9106 17 6 9.0545 -1.3111 9.2302 18 6 8.7312 0.1605 9.2570 19 1 8.2760 0.6292 8.3970 20 6 9.0164 0.9087 10.3794 21 7 9.5712 0.3381 11.4265 22 14 8.6163 2.7330 10.4125 23 1 7.1567 2.9233 10.2160 24 1 9.0185 3.3044 11.7228 25 1 9.3561 3.4219 9.3246 26 6 7.2916 -1.6823 7.6120 27 6 6.9459 -2.4251 6.3171 28 6 2.0418 -0.7234 1.2477 29 1 -0.3632 -1.0276 0.0005 30 1 -0.3633 0.5150 0.8893 31 1 -0.3633 0.5127 -0.8907 32 1 1.7151 -0.1865 -2.1399 33 1 1.6459 -1.7388 -1.2694 34 1 3.9673 0.2449 -1.2306 35 1 3.9396 -1.3216 -2.0769 36 1 5.1130 -1.4942 0.1079 37 1 3.6388 -2.4913 0.0829 38 1 3.8323 -2.3746 2.5183 39 1 3.5611 -0.8170 3.3358 40 1 5.7569 -0.0056 2.5179 41 1 6.0279 -1.5632 1.7003 42 1 5.4788 -2.0708 4.4240 43 1 9.8429 -1.4886 4.7341 44 1 9.6538 -3.0272 5.6125 45 1 10.6105 -1.3723 7.1391 46 1 9.3151 -0.2141 6.7519 47 1 8.4743 -1.8247 9.9968 48 1 10.1179 -1.4531 9.4233 49 1 9.7716 0.8644 12.2163 50 1 7.0768 -0.6206 7.4908 51 1 6.6949 -2.0828 8.4315 52 1 5.9186 -2.2012 6.0296 53 1 7.0587 -3.4989 6.4661 54 1 1.6662 -1.7466 1.2540 55 1 1.6914 -0.2025 2.1387 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601569537.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:40 Heat of formation + Delta-G solvation = -44.502645 kcal Electronic energy + Delta-G solvation = -30028.460201 eV Core-core repulsion = 26099.005487 eV Total energy + Delta-G solvation = -3929.454714 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.46582 -40.22452 -39.15656 -36.69897 -36.01662 -34.83508 -34.22280 -32.84471 -32.05014 -30.33170 -29.21766 -27.42924 -27.06767 -25.20866 -24.51545 -24.01201 -23.48332 -22.14711 -21.95914 -20.59050 -20.52076 -19.20865 -18.32202 -17.63096 -16.91357 -16.83879 -16.65798 -16.28554 -15.99136 -15.86298 -15.56481 -15.42319 -15.29070 -15.11092 -15.00658 -14.78264 -14.71879 -14.22804 -13.75767 -13.67560 -13.55182 -13.38502 -13.08995 -12.97989 -12.95172 -12.73246 -12.58681 -12.51235 -12.47611 -12.25862 -12.20038 -11.95123 -11.92392 -11.84210 -11.66183 -11.51920 -11.29447 -11.17341 -11.12495 -10.62061 -10.25388 -9.58444 -9.32553 -9.03522 -8.17888 -6.36712 1.34141 1.35569 1.43409 1.55427 2.09436 2.34651 2.68803 3.07170 3.14883 3.31303 3.74507 3.81825 3.92069 3.98975 4.01206 4.12335 4.13496 4.19361 4.25149 4.37317 4.41556 4.45724 4.51071 4.53328 4.62332 4.64136 4.71525 4.76878 4.77876 4.82241 4.87827 4.90707 4.94774 4.96229 5.00397 5.06402 5.13977 5.18783 5.21628 5.23623 5.31755 5.32194 5.36606 5.44598 5.47577 5.54029 5.71902 5.90205 6.02789 6.07134 6.12220 6.21147 6.45857 6.82888 6.92707 7.34463 7.50731 8.84024 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.015096 B = 0.002074 C = 0.001928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.338773 B =13498.586236 C =14520.382873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.090 4.090 3 H 0.067 0.933 4 C -0.113 4.113 5 C -0.117 4.117 6 C 0.050 3.950 7 N -0.548 5.548 8 C 0.056 3.944 9 C 0.148 3.852 10 N -0.733 5.733 11 C 0.705 3.295 12 O -0.636 6.636 13 N -0.627 5.627 14 C 0.144 3.856 15 C 0.055 3.945 16 N -0.533 5.533 17 C 0.200 3.800 18 C -0.556 4.556 19 H 0.049 0.951 20 C 0.015 3.985 21 N -0.921 5.921 22 Si 0.951 3.049 23 H -0.269 1.269 24 H -0.279 1.279 25 H -0.277 1.277 26 C 0.049 3.951 27 C 0.125 3.875 28 C 0.063 3.937 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.038 0.962 38 H 0.054 0.946 39 H 0.090 0.910 40 H 0.051 0.949 41 H 0.058 0.942 42 H 0.409 0.591 43 H 0.081 0.919 44 H 0.086 0.914 45 H 0.075 0.925 46 H 0.011 0.989 47 H 0.013 0.987 48 H 0.009 0.991 49 H 0.266 0.734 50 H 0.016 0.984 51 H 0.084 0.916 52 H 0.104 0.896 53 H 0.093 0.907 54 H 0.038 0.962 55 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.867 -6.826 -23.142 30.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.109 4.109 3 H 0.086 0.914 4 C -0.151 4.151 5 C -0.155 4.155 6 C -0.078 4.078 7 N -0.273 5.273 8 C -0.072 4.072 9 C 0.023 3.977 10 N -0.392 5.392 11 C 0.406 3.594 12 O -0.518 6.518 13 N -0.364 5.364 14 C 0.020 3.980 15 C -0.074 4.074 16 N -0.257 5.257 17 C 0.073 3.927 18 C -0.595 4.595 19 H 0.067 0.933 20 C -0.185 4.185 21 N -0.561 5.561 22 Si 0.777 3.223 23 H -0.194 1.194 24 H -0.204 1.204 25 H -0.203 1.203 26 C -0.080 4.080 27 C 0.002 3.998 28 C -0.064 4.064 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.095 0.905 36 H 0.088 0.912 37 H 0.056 0.944 38 H 0.072 0.928 39 H 0.108 0.892 40 H 0.069 0.931 41 H 0.076 0.924 42 H 0.248 0.752 43 H 0.100 0.900 44 H 0.105 0.895 45 H 0.093 0.907 46 H 0.029 0.971 47 H 0.032 0.968 48 H 0.027 0.973 49 H 0.075 0.925 50 H 0.034 0.966 51 H 0.102 0.898 52 H 0.122 0.878 53 H 0.111 0.889 54 H 0.056 0.944 55 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -18.021 -6.486 -23.582 30.380 hybrid contribution -0.317 1.138 0.994 1.544 sum -18.339 -5.348 -22.588 29.582 Atomic orbital electron populations 1.21762 0.93883 1.02137 1.02279 1.21165 0.95910 0.99707 0.94084 0.91427 1.21638 0.94985 1.00643 0.97823 1.21587 0.96326 1.01151 0.96423 1.22211 0.99944 0.95154 0.90496 1.61734 1.09022 1.54699 1.01844 1.22102 0.92789 0.98975 0.93357 1.21043 0.93708 0.98050 0.84914 1.44979 1.06229 1.63713 1.24258 1.15947 0.82956 0.78453 0.82036 1.90859 1.57684 1.53995 1.49233 1.47389 1.08091 1.68165 1.12764 1.21526 0.79650 1.01381 0.95428 1.22222 0.98092 0.95550 0.91541 1.62417 1.04006 1.56491 1.02782 1.19443 0.95290 0.91803 0.86141 1.21903 1.41106 0.96434 1.00079 0.93287 1.25739 0.94802 1.02651 0.95328 1.70037 1.43132 1.37838 1.05073 0.85713 0.78857 0.80402 0.77331 1.19438 1.20432 1.20267 1.22303 0.90162 0.97972 0.97609 1.21912 0.93002 0.99823 0.85042 1.22171 0.85711 0.99360 0.99186 0.92381 0.92361 0.91964 0.91136 0.91898 0.92029 0.90513 0.91174 0.94393 0.92831 0.89162 0.93066 0.92407 0.75220 0.90036 0.89543 0.90672 0.97108 0.96849 0.97320 0.92542 0.96569 0.89798 0.87789 0.88880 0.94353 0.90419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 9.20 71.98 0.66 -0.59 16 2 C -0.09 -1.03 2.88 -10.74 -0.03 -1.06 16 3 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 4 C -0.11 -1.21 5.29 30.67 0.16 -1.05 16 5 C -0.12 -1.48 6.09 30.65 0.19 -1.29 16 6 C 0.05 0.72 5.29 86.33 0.46 1.18 16 7 N -0.55 -8.48 4.65 -896.36 -4.17 -12.65 16 8 C 0.06 0.82 5.07 86.30 0.44 1.26 16 9 C 0.15 3.11 5.61 86.38 0.48 3.59 16 10 N -0.73 -16.54 5.41 -478.54 -2.59 -19.13 16 11 C 0.70 22.24 8.30 179.05 1.49 23.73 16 12 O -0.64 -25.30 15.80 -3.98 -0.06 -25.37 16 13 N -0.63 -18.97 3.01 -835.91 -2.52 -21.49 16 14 C 0.14 4.67 6.61 86.35 0.57 5.24 16 15 C 0.06 2.18 5.24 86.39 0.45 2.63 16 16 N -0.53 -21.83 4.83 -899.82 -4.35 -26.17 16 17 C 0.20 10.21 5.11 85.56 0.44 10.64 16 18 C -0.56 -30.56 7.77 25.60 0.20 -30.36 16 19 H 0.05 2.72 5.87 -2.91 -0.02 2.70 16 20 C 0.01 0.82 5.46 84.65 0.46 1.29 16 21 N -0.92 -54.13 13.29 21.45 0.28 -53.85 16 22 Si 0.95 44.20 29.54 68.60 2.03 46.23 16 23 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 24 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 25 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 26 C 0.05 1.71 5.16 86.38 0.45 2.15 16 27 C 0.12 3.13 6.49 86.35 0.56 3.69 16 28 C 0.06 0.79 4.74 86.33 0.41 1.20 16 29 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.07 1.16 6.22 -2.39 -0.01 1.15 16 37 H 0.04 0.51 8.14 -2.38 -0.02 0.50 16 38 H 0.05 0.66 8.12 -2.39 -0.02 0.65 16 39 H 0.09 1.20 7.98 -2.39 -0.02 1.18 16 40 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.06 1.33 6.44 -2.39 -0.02 1.31 16 42 H 0.41 6.67 6.12 -92.71 -0.57 6.10 16 43 H 0.08 2.79 7.04 -2.39 -0.02 2.77 16 44 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 45 H 0.07 2.95 8.06 -2.39 -0.02 2.93 16 46 H 0.01 0.48 7.05 -2.39 -0.02 0.47 16 47 H 0.01 0.73 8.14 -2.39 -0.02 0.71 16 48 H 0.01 0.48 8.07 -2.38 -0.02 0.46 16 49 H 0.27 14.77 8.31 -92.71 -0.77 14.00 16 50 H 0.02 0.65 6.66 -2.39 -0.02 0.64 16 51 H 0.08 2.82 8.11 -2.39 -0.02 2.80 16 52 H 0.10 1.87 5.85 -2.39 -0.01 1.86 16 53 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 54 H 0.04 0.45 8.14 -2.39 -0.02 0.43 16 55 H 0.08 0.94 8.01 -2.39 -0.02 0.92 16 Total: -1.00 -69.22 414.09 -3.71 -72.92 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: 0.28 Total: 17.25 kcal Atomic # 6 Polarization: 14.86 SS G_CDS: 7.38 Total: 22.25 kcal Atomic # 7 Polarization: -119.95 SS G_CDS: -13.34 Total: -133.29 kcal Atomic # 8 Polarization: -25.30 SS G_CDS: -0.06 Total: -25.37 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -69.22 -3.71 -72.92 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601569537.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.421 kcal (2) G-P(sol) polarization free energy of solvation -69.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds