Wall clock time and date at job start Tue Mar 31 2020 22:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46894 * 109.47474 * 2 1 4 4 C 1.46840 * 111.00368 * 70.13010 * 3 2 1 5 5 C 1.53036 * 109.52777 * 174.15971 * 4 3 2 6 6 C 1.53117 * 109.27669 * 59.17767 * 5 4 3 7 7 C 1.53117 * 109.16485 * 302.34833 * 6 5 4 8 8 C 1.46848 * 111.00119 * 305.92017 * 3 2 1 9 9 H 1.08999 * 109.46101 * 65.82441 * 8 3 2 10 10 C 1.53004 * 109.46365 * 305.85669 * 8 3 2 11 11 N 1.46502 * 109.46999 * 305.49875 * 10 8 3 12 12 C 1.34777 * 120.00325 * 175.02014 * 11 10 8 13 13 O 1.21592 * 119.99604 * 5.03699 * 12 11 10 14 14 N 1.34770 * 120.00562 * 185.03388 * 12 11 10 15 15 C 1.47076 * 120.87855 * 4.74704 * 14 12 11 16 16 C 1.53697 * 108.27809 * 128.75914 * 15 14 12 17 17 N 1.46902 * 109.25862 * 54.07988 * 16 15 14 18 18 C 1.46893 * 111.00459 * 172.61350 * 17 16 15 19 19 C 1.50696 * 109.47367 * 59.31868 * 18 17 16 20 20 H 1.08001 * 119.99734 * 5.03752 * 19 18 17 21 21 C 1.37880 * 120.00428 * 185.02642 * 19 18 17 22 22 N 1.31511 * 119.99744 * 0.02562 * 21 19 18 23 23 Si 1.86793 * 120.00247 * 180.02562 * 21 19 18 24 24 H 1.48510 * 109.46846 * 90.00191 * 23 21 19 25 25 H 1.48496 * 109.47516 * 210.00091 * 23 21 19 26 26 H 1.48499 * 109.47179 * 330.00538 * 23 21 19 27 27 C 1.46902 * 111.26820 * 296.76322 * 17 16 15 28 28 C 1.47076 * 120.88381 * 185.03165 * 14 12 11 29 29 H 1.08998 * 109.47516 * 175.45289 * 1 2 3 30 30 H 1.09003 * 109.46827 * 55.45431 * 1 2 3 31 31 H 1.09001 * 109.47365 * 295.46289 * 1 2 3 32 32 H 1.08998 * 109.46875 * 120.00309 * 2 1 3 33 33 H 1.09010 * 109.47071 * 239.99524 * 2 1 3 34 34 H 1.08997 * 109.46063 * 294.18098 * 4 3 2 35 35 H 1.09005 * 109.45895 * 54.15520 * 4 3 2 36 36 H 1.09001 * 109.50310 * 179.12301 * 5 4 3 37 37 H 1.08998 * 109.50486 * 299.20131 * 5 4 3 38 38 H 1.08999 * 109.51940 * 62.25395 * 6 5 4 39 39 H 1.09004 * 109.52342 * 182.43826 * 6 5 4 40 40 H 1.08996 * 109.50778 * 177.59328 * 7 6 5 41 41 H 1.09005 * 109.50445 * 297.67587 * 7 6 5 42 42 H 1.09001 * 109.47087 * 65.49271 * 10 8 3 43 43 H 1.08996 * 109.47761 * 185.49805 * 10 8 3 44 44 H 0.97003 * 120.00441 * 355.02984 * 11 10 8 45 45 H 1.09000 * 109.63205 * 248.52319 * 15 14 12 46 46 H 1.08996 * 109.63140 * 9.10819 * 15 14 12 47 47 H 1.09000 * 109.64289 * 294.08164 * 16 15 14 48 48 H 1.08995 * 109.44978 * 173.96207 * 16 15 14 49 49 H 1.08997 * 109.47600 * 179.32865 * 18 17 16 50 50 H 1.09012 * 109.46647 * 299.32607 * 18 17 16 51 51 H 0.97001 * 119.99991 * 179.97438 * 22 21 19 52 52 H 1.08999 * 109.49064 * 303.14272 * 27 17 16 53 53 H 1.09002 * 109.51274 * 183.07495 * 27 17 16 54 54 H 1.09000 * 109.62836 * 350.89358 * 28 14 12 55 55 H 1.09003 * 109.63607 * 111.47403 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.7559 2.0364 1.2892 5 6 2.4055 3.4220 1.3046 6 6 1.8317 4.2620 0.1601 7 6 2.0770 3.5381 -1.1666 8 6 1.4369 2.1492 -1.1102 9 1 0.3625 2.2504 -0.9569 10 6 1.6967 1.4144 -2.4269 11 7 3.1327 1.1614 -2.5697 12 6 3.5888 0.4348 -3.6092 13 8 2.8209 0.0669 -4.4772 14 7 4.8960 0.1161 -3.6866 15 6 5.8228 0.4610 -2.5979 16 6 6.6006 -0.8059 -2.2075 17 7 7.2339 -1.3740 -3.4050 18 6 8.1289 -2.4837 -3.0511 19 6 7.3417 -3.5593 -2.3479 20 1 6.2697 -3.4689 -2.2526 21 6 7.9899 -4.6588 -1.8265 22 7 9.2953 -4.7687 -1.9423 23 14 7.0140 -5.9923 -0.9555 24 1 6.5908 -7.0196 -1.9409 25 1 7.8616 -6.6255 0.0865 26 1 5.8137 -5.3921 -0.3197 27 6 6.2289 -1.8010 -4.3876 28 6 5.4348 -0.5803 -4.8647 29 1 -0.3634 -1.0244 -0.0815 30 1 -0.3633 0.5828 -0.8465 31 1 -0.3634 0.4418 0.9278 32 1 1.8932 -0.5139 0.8900 33 1 1.8933 -0.5140 -0.8900 34 1 0.6800 2.1381 1.4313 35 1 2.1729 1.4311 2.0941 36 1 2.1963 3.9115 2.2557 37 1 3.4832 3.3201 1.1770 38 1 0.7604 4.3968 0.3089 39 1 2.3229 5.2349 0.1406 40 1 1.6331 4.1106 -1.9811 41 1 3.1495 3.4386 -1.3341 42 1 1.1591 0.4661 -2.4259 43 1 1.3512 2.0271 -3.2594 44 1 3.7552 1.5167 -1.9161 45 1 6.5166 1.2300 -2.9374 46 1 5.2594 0.8255 -1.7390 47 1 5.9170 -1.5371 -1.7760 48 1 7.3679 -0.5500 -1.4769 49 1 8.5753 -2.8936 -3.9570 50 1 8.9161 -2.1193 -2.3909 51 1 9.7514 -5.5421 -1.5752 52 1 5.5505 -2.5184 -3.9257 53 1 6.7264 -2.2666 -5.2385 54 1 4.6146 -0.9045 -5.5052 55 1 6.0920 0.0906 -5.4180 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601570120.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:32 Heat of formation + Delta-G solvation = -36.462818 kcal Electronic energy + Delta-G solvation = -31773.451977 eV Core-core repulsion = 27844.345897 eV Total energy + Delta-G solvation = -3929.106081 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.56516 -40.50643 -39.02502 -35.97257 -35.81830 -35.27274 -34.29310 -32.44671 -31.60989 -30.38709 -29.77417 -27.66132 -26.81540 -25.26424 -24.52216 -24.14579 -23.37813 -22.16860 -22.04840 -20.54414 -19.97903 -19.18127 -18.31680 -17.47551 -16.96047 -16.87093 -16.66951 -16.25348 -15.97403 -15.64459 -15.63438 -15.42344 -15.25861 -15.12079 -14.81806 -14.73927 -14.46078 -14.05633 -13.86611 -13.71126 -13.51264 -13.41073 -13.11074 -12.98590 -12.91593 -12.79229 -12.69735 -12.52094 -12.44971 -12.32032 -12.20739 -11.95099 -11.81709 -11.69055 -11.61848 -11.55911 -11.27230 -11.15708 -11.06921 -10.62114 -10.14784 -9.50760 -9.22264 -9.01741 -8.17474 -6.36355 1.33415 1.34773 1.44500 1.69520 2.18449 2.34923 2.83537 3.07317 3.08437 3.33048 3.68186 3.80601 3.97697 4.03583 4.10371 4.15229 4.20966 4.26271 4.30034 4.34759 4.38755 4.41657 4.47074 4.54445 4.60829 4.65464 4.66772 4.70224 4.80084 4.87102 4.88524 4.91475 4.95253 5.01504 5.07589 5.13022 5.14484 5.20430 5.22648 5.25122 5.28913 5.32262 5.34624 5.51529 5.53270 5.58003 5.72543 5.96685 6.06225 6.13791 6.19401 6.23750 6.46888 6.83763 7.03110 7.34896 7.60337 8.84701 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.011831 B = 0.003181 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2366.066470 B = 8801.030621 C = 9713.609376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.049 3.951 3 N -0.536 5.536 4 C 0.055 3.945 5 C -0.116 4.116 6 C -0.116 4.116 7 C -0.111 4.111 8 C 0.079 3.921 9 H 0.069 0.931 10 C 0.145 3.855 11 N -0.718 5.718 12 C 0.702 3.298 13 O -0.640 6.640 14 N -0.628 5.628 15 C 0.128 3.872 16 C 0.055 3.945 17 N -0.534 5.534 18 C 0.201 3.799 19 C -0.556 4.556 20 H 0.048 0.952 21 C 0.017 3.983 22 N -0.922 5.922 23 Si 0.951 3.049 24 H -0.276 1.276 25 H -0.277 1.277 26 H -0.272 1.272 27 C 0.055 3.945 28 C 0.145 3.855 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.055 0.945 34 H 0.039 0.961 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.065 0.935 42 H 0.050 0.950 43 H 0.066 0.934 44 H 0.410 0.590 45 H 0.090 0.910 46 H 0.099 0.901 47 H 0.015 0.985 48 H 0.078 0.922 49 H 0.006 0.994 50 H 0.015 0.985 51 H 0.266 0.734 52 H 0.010 0.990 53 H 0.076 0.924 54 H 0.082 0.918 55 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.896 19.962 6.517 26.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.079 4.079 3 N -0.260 5.260 4 C -0.072 4.072 5 C -0.154 4.154 6 C -0.154 4.154 7 C -0.148 4.148 8 C -0.030 4.030 9 H 0.087 0.913 10 C 0.021 3.979 11 N -0.377 5.377 12 C 0.404 3.596 13 O -0.523 6.523 14 N -0.364 5.364 15 C 0.005 3.995 16 C -0.074 4.074 17 N -0.257 5.257 18 C 0.074 3.926 19 C -0.595 4.595 20 H 0.066 0.934 21 C -0.183 4.183 22 N -0.562 5.562 23 Si 0.777 3.223 24 H -0.202 1.202 25 H -0.202 1.202 26 H -0.197 1.197 27 C -0.074 4.074 28 C 0.021 3.979 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.074 0.926 34 H 0.057 0.943 35 H 0.091 0.909 36 H 0.096 0.904 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.084 0.916 42 H 0.069 0.931 43 H 0.085 0.915 44 H 0.249 0.751 45 H 0.108 0.892 46 H 0.117 0.883 47 H 0.033 0.967 48 H 0.097 0.903 49 H 0.024 0.976 50 H 0.033 0.967 51 H 0.075 0.925 52 H 0.028 0.972 53 H 0.094 0.906 54 H 0.100 0.900 55 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -16.512 19.961 5.688 26.522 hybrid contribution -1.128 -2.042 1.137 2.595 sum -17.639 17.919 6.826 26.055 Atomic orbital electron populations 1.22371 0.97147 1.02589 1.02271 1.22087 0.93705 0.90034 1.02048 1.62098 1.58869 1.01654 1.03429 1.22133 0.98761 0.95877 0.90472 1.21594 1.00705 0.94008 0.99047 1.21554 1.01168 0.98798 0.93884 1.21639 1.01361 0.93336 0.98513 1.21903 0.98194 0.93803 0.89069 0.91349 1.21287 0.80212 0.99413 0.97033 1.44968 1.09109 1.56264 1.27338 1.16019 0.81834 0.79224 0.82558 1.90842 1.56382 1.62030 1.42995 1.47352 1.06504 1.61129 1.21430 1.21926 0.91745 0.96433 0.89356 1.22304 0.97191 0.95249 0.92690 1.62424 1.18740 1.32384 1.12187 1.19428 0.91669 0.87069 0.94391 1.21924 0.93824 1.06581 1.37137 0.93416 1.25718 0.95691 1.00252 0.96676 1.70039 1.08932 1.30544 1.46644 0.85663 0.78697 0.79417 0.78548 1.20214 1.20207 1.19713 1.22239 0.93415 0.95655 0.96139 1.21509 0.96815 0.92861 0.86708 0.92308 0.92141 0.91735 0.90868 0.92604 0.94290 0.90863 0.90442 0.91628 0.91792 0.90825 0.90566 0.91589 0.93143 0.91543 0.75074 0.89203 0.88323 0.96712 0.90319 0.97615 0.96699 0.92517 0.97162 0.90572 0.89976 0.89735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.89 9.00 71.98 0.65 -2.24 16 2 C 0.05 0.93 5.50 86.30 0.47 1.40 16 3 N -0.54 -8.64 4.18 -871.13 -3.64 -12.28 16 4 C 0.05 0.72 5.13 86.33 0.44 1.16 16 5 C -0.12 -1.26 6.09 30.65 0.19 -1.07 16 6 C -0.12 -1.15 6.00 30.67 0.18 -0.97 16 7 C -0.11 -1.36 5.26 30.65 0.16 -1.20 16 8 C 0.08 1.17 1.47 44.94 0.07 1.24 16 9 H 0.07 0.93 6.47 -2.39 -0.02 0.92 16 10 C 0.15 3.01 4.44 86.38 0.38 3.39 16 11 N -0.72 -17.15 4.88 -478.53 -2.34 -19.48 16 12 C 0.70 22.57 8.31 179.06 1.49 24.06 16 13 O -0.64 -25.33 15.80 -4.01 -0.06 -25.39 16 14 N -0.63 -19.66 3.00 -835.06 -2.51 -22.17 16 15 C 0.13 3.51 6.52 86.50 0.56 4.07 16 16 C 0.06 2.03 5.17 86.54 0.45 2.48 16 17 N -0.53 -22.37 4.83 -898.88 -4.34 -26.71 16 18 C 0.20 10.41 5.11 85.56 0.44 10.85 16 19 C -0.56 -30.88 7.75 25.60 0.20 -30.69 16 20 H 0.05 2.69 5.88 -2.91 -0.02 2.68 16 21 C 0.02 0.93 5.46 84.66 0.46 1.39 16 22 N -0.92 -54.42 13.29 21.45 0.28 -54.14 16 23 Si 0.95 44.39 29.54 68.60 2.03 46.41 16 24 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 25 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 26 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 27 C 0.06 2.18 5.24 86.38 0.45 2.63 16 28 C 0.14 4.79 6.61 86.35 0.57 5.36 16 29 H 0.06 0.95 8.14 -2.39 -0.02 0.94 16 30 H 0.06 0.93 5.64 -2.39 -0.01 0.91 16 31 H 0.06 0.87 7.02 -2.39 -0.02 0.85 16 32 H 0.07 1.39 7.98 -2.39 -0.02 1.37 16 33 H 0.06 1.35 6.61 -2.38 -0.02 1.34 16 34 H 0.04 0.47 6.98 -2.39 -0.02 0.46 16 35 H 0.07 1.00 8.01 -2.38 -0.02 0.98 16 36 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.06 0.58 8.14 -2.39 -0.02 0.57 16 39 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 40 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.07 0.91 7.10 -2.38 -0.02 0.89 16 42 H 0.05 1.23 6.15 -2.39 -0.01 1.21 16 43 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 44 H 0.41 8.49 4.91 -92.71 -0.46 8.04 16 45 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 46 H 0.10 2.20 5.83 -2.39 -0.01 2.19 16 47 H 0.01 0.63 6.79 -2.39 -0.02 0.61 16 48 H 0.08 2.85 8.11 -2.39 -0.02 2.83 16 49 H 0.01 0.32 8.07 -2.39 -0.02 0.30 16 50 H 0.01 0.83 8.14 -2.38 -0.02 0.81 16 51 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 52 H 0.01 0.46 6.92 -2.39 -0.02 0.44 16 53 H 0.08 2.98 8.05 -2.39 -0.02 2.96 16 54 H 0.08 2.83 7.04 -2.39 -0.02 2.82 16 55 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 Total: -1.00 -67.40 403.21 -3.00 -70.40 By element: Atomic # 1 Polarization: 21.09 SS G_CDS: 0.41 Total: 21.50 kcal Atomic # 6 Polarization: 14.70 SS G_CDS: 7.17 Total: 21.87 kcal Atomic # 7 Polarization: -122.24 SS G_CDS: -12.54 Total: -134.78 kcal Atomic # 8 Polarization: -25.33 SS G_CDS: -0.06 Total: -25.39 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.41 kcal Total: -67.40 -3.00 -70.40 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601570120.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.934 kcal (2) G-P(sol) polarization free energy of solvation -67.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds