Wall clock time and date at job start Tue Mar 31 2020 22:16:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46909 * 109.47053 * 2 1 4 4 C 1.46839 * 111.00095 * 52.14273 * 3 2 1 5 5 C 1.53035 * 109.52223 * 185.84228 * 4 3 2 6 6 C 1.53123 * 109.27754 * 300.81790 * 5 4 3 7 7 C 1.53117 * 109.15719 * 57.65773 * 6 5 4 8 8 C 1.46846 * 110.99812 * 176.35495 * 3 2 1 9 9 H 1.08999 * 109.45210 * 294.16511 * 8 3 2 10 10 C 1.52992 * 109.46586 * 54.14056 * 8 3 2 11 11 N 1.46508 * 109.47247 * 54.92441 * 10 8 3 12 12 C 1.34775 * 120.00157 * 184.91031 * 11 10 8 13 13 O 1.21582 * 119.99843 * 4.99869 * 12 11 10 14 14 N 1.34776 * 119.99695 * 185.00312 * 12 11 10 15 15 C 1.47083 * 120.87683 * 175.51635 * 14 12 11 16 16 C 1.53242 * 108.52161 * 128.83788 * 15 14 12 17 17 N 1.46895 * 109.34252 * 53.82127 * 16 15 14 18 18 C 1.46904 * 111.00122 * 172.74800 * 17 16 15 19 19 C 1.50700 * 109.46785 * 71.96408 * 18 17 16 20 20 H 1.07996 * 120.00070 * 4.36087 * 19 18 17 21 21 C 1.37878 * 119.99616 * 184.35544 * 19 18 17 22 22 N 1.31516 * 120.00127 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99921 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47147 * 90.00063 * 23 21 19 25 25 H 1.48500 * 109.47453 * 210.00122 * 23 21 19 26 26 H 1.48504 * 109.47117 * 330.00182 * 23 21 19 27 27 C 1.46899 * 111.27201 * 296.89754 * 17 16 15 28 28 C 1.47079 * 120.88167 * 355.53163 * 14 12 11 29 29 H 1.08999 * 109.47074 * 300.00588 * 1 2 3 30 30 H 1.09003 * 109.46788 * 60.00210 * 1 2 3 31 31 H 1.08995 * 109.46996 * 179.97438 * 1 2 3 32 32 H 1.08990 * 109.47529 * 239.99736 * 2 1 3 33 33 H 1.09005 * 109.47020 * 119.99054 * 2 1 3 34 34 H 1.08995 * 109.46806 * 65.82417 * 4 3 2 35 35 H 1.09007 * 109.45567 * 305.84930 * 4 3 2 36 36 H 1.09004 * 109.50569 * 180.87487 * 5 4 3 37 37 H 1.09006 * 109.53952 * 60.78326 * 5 4 3 38 38 H 1.08997 * 109.51829 * 297.75044 * 6 5 4 39 39 H 1.09002 * 109.56803 * 177.59246 * 6 5 4 40 40 H 1.09000 * 109.49822 * 182.40286 * 7 6 5 41 41 H 1.08993 * 109.53727 * 62.30670 * 7 6 5 42 42 H 1.09001 * 109.47444 * 294.92342 * 10 8 3 43 43 H 1.09001 * 109.47360 * 174.92384 * 10 8 3 44 44 H 0.96998 * 119.99299 * 4.91004 * 11 10 8 45 45 H 1.08999 * 109.63126 * 9.12471 * 15 14 12 46 46 H 1.09001 * 109.78491 * 248.63380 * 15 14 12 47 47 H 1.09001 * 109.48951 * 173.78904 * 16 15 14 48 48 H 1.09009 * 109.48618 * 293.86306 * 16 15 14 49 49 H 1.08996 * 109.46887 * 191.96946 * 18 17 16 50 50 H 1.09006 * 109.46522 * 311.96924 * 18 17 16 51 51 H 0.97002 * 119.99442 * 179.97438 * 22 21 19 52 52 H 1.08995 * 109.49304 * 303.14608 * 27 17 16 53 53 H 1.08997 * 109.51250 * 183.07309 * 27 17 16 54 54 H 1.08996 * 109.62863 * 350.87743 * 28 14 12 55 55 H 1.08996 * 109.62501 * 111.45951 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3851 0.0000 4 6 1.4019 2.1616 1.0823 5 6 1.8215 3.6285 0.9632 6 6 3.3474 3.7262 1.0463 7 6 3.9668 2.8701 -0.0617 8 6 3.4850 1.4251 0.0872 9 1 3.8019 1.0344 1.0541 10 6 4.0858 0.5698 -1.0300 11 7 3.5635 1.0185 -2.3232 12 6 3.8782 0.3451 -3.4475 13 8 4.5196 -0.6856 -3.3793 14 7 3.4821 0.8142 -4.6472 15 6 3.8968 0.1496 -5.8920 16 6 2.6494 -0.1136 -6.7423 17 7 1.9112 1.1431 -6.9252 18 6 0.8039 0.9698 -7.8749 19 6 -0.2868 0.1532 -7.2311 20 1 -0.2009 -0.1419 -6.1958 21 6 -1.3945 -0.2172 -7.9639 22 7 -1.4988 0.1417 -9.2249 23 14 -2.7468 -1.2289 -7.1658 24 1 -3.7561 -0.3200 -6.5654 25 1 -3.3977 -2.0825 -8.1920 26 1 -2.1618 -2.0885 -6.1055 27 6 1.4265 1.6681 -5.6417 28 6 2.6238 2.0046 -4.7463 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 1.7287 1.7675 2.0445 35 1 0.3169 2.0872 1.0090 36 1 1.3753 4.2019 1.7758 37 1 1.4828 4.0281 0.0072 38 1 3.6831 3.3634 2.0178 39 1 3.6542 4.7644 0.9192 40 1 5.0534 2.9015 0.0187 41 1 3.6626 3.2568 -1.0343 42 1 3.8171 -0.4748 -0.8724 43 1 5.1710 0.6711 -1.0216 44 1 2.9913 1.8003 -2.3702 45 1 4.3860 -0.7957 -5.6570 46 1 4.5854 0.7917 -6.4413 47 1 2.9481 -0.5050 -7.7147 48 1 2.0120 -0.8398 -6.2376 49 1 0.4094 1.9465 -8.1551 50 1 1.1659 0.4551 -8.7650 51 1 -2.2779 -0.1193 -9.7404 52 1 0.8062 0.9172 -5.1525 53 1 0.8381 2.5690 -5.8157 54 1 2.2715 2.2856 -3.7539 55 1 3.1886 2.8276 -5.1842 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601570122.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:35 Heat of formation + Delta-G solvation = -34.789741 kcal Electronic energy + Delta-G solvation = -31739.396148 eV Core-core repulsion = 27810.362617 eV Total energy + Delta-G solvation = -3929.033531 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.53758 -40.39482 -39.03906 -35.97565 -35.87324 -35.25608 -34.29898 -32.54650 -31.65715 -30.52984 -29.79982 -27.62932 -26.72409 -25.54210 -24.57181 -24.11002 -22.69799 -22.20381 -21.99574 -20.69257 -20.22428 -19.24564 -18.30368 -17.51984 -16.97541 -16.82076 -16.68174 -16.17598 -15.97828 -15.71974 -15.56517 -15.42669 -15.33675 -15.19019 -14.79176 -14.62143 -14.40310 -14.33483 -14.07946 -13.74204 -13.54869 -13.30115 -12.98466 -12.92902 -12.88783 -12.64264 -12.62894 -12.52852 -12.51575 -12.18556 -12.09828 -12.05904 -11.96357 -11.77118 -11.61297 -11.54515 -11.18669 -11.12008 -11.08706 -10.61762 -10.15713 -9.51276 -9.26948 -9.01143 -8.17355 -6.36158 1.33683 1.35219 1.44927 1.69287 2.17354 2.35199 2.79812 3.05445 3.08067 3.32066 3.65990 3.80931 3.97477 4.04023 4.13501 4.14476 4.17521 4.23062 4.29472 4.38008 4.39850 4.42043 4.53798 4.53999 4.58319 4.63884 4.68435 4.71273 4.78849 4.80303 4.89693 4.91422 4.97880 5.05718 5.06362 5.11364 5.16498 5.18637 5.22845 5.25025 5.29033 5.34180 5.36035 5.51096 5.52915 5.56844 5.73229 5.96044 6.05505 6.12273 6.18994 6.23253 6.47127 6.84113 7.02291 7.35392 7.59647 8.85079 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.011515 B = 0.003285 C = 0.002891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2431.077161 B = 8521.154362 C = 9683.982002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.053 3.947 3 N -0.538 5.538 4 C 0.051 3.949 5 C -0.116 4.116 6 C -0.117 4.117 7 C -0.109 4.109 8 C 0.081 3.919 9 H 0.064 0.936 10 C 0.145 3.855 11 N -0.719 5.719 12 C 0.702 3.298 13 O -0.640 6.640 14 N -0.627 5.627 15 C 0.145 3.855 16 C 0.055 3.945 17 N -0.533 5.533 18 C 0.201 3.799 19 C -0.557 4.557 20 H 0.052 0.948 21 C 0.016 3.984 22 N -0.923 5.923 23 Si 0.952 3.048 24 H -0.270 1.270 25 H -0.280 1.280 26 H -0.276 1.276 27 C 0.053 3.947 28 C 0.128 3.872 29 H 0.071 0.929 30 H 0.050 0.950 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.036 0.964 34 H 0.035 0.965 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.073 0.927 40 H 0.077 0.923 41 H 0.066 0.934 42 H 0.049 0.951 43 H 0.069 0.931 44 H 0.409 0.591 45 H 0.082 0.918 46 H 0.085 0.915 47 H 0.076 0.924 48 H 0.008 0.992 49 H 0.012 0.988 50 H 0.008 0.992 51 H 0.265 0.735 52 H 0.017 0.983 53 H 0.080 0.920 54 H 0.097 0.903 55 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.384 8.226 23.811 26.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.075 4.075 3 N -0.265 5.265 4 C -0.076 4.076 5 C -0.154 4.154 6 C -0.154 4.154 7 C -0.147 4.147 8 C -0.028 4.028 9 H 0.082 0.918 10 C 0.020 3.980 11 N -0.377 5.377 12 C 0.404 3.596 13 O -0.523 6.523 14 N -0.364 5.364 15 C 0.021 3.979 16 C -0.075 4.075 17 N -0.257 5.257 18 C 0.074 3.926 19 C -0.596 4.596 20 H 0.070 0.930 21 C -0.184 4.184 22 N -0.563 5.563 23 Si 0.777 3.223 24 H -0.195 1.195 25 H -0.206 1.206 26 H -0.201 1.201 27 C -0.076 4.076 28 C 0.005 3.995 29 H 0.089 0.911 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.100 0.900 36 H 0.096 0.904 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.092 0.908 40 H 0.096 0.904 41 H 0.085 0.915 42 H 0.068 0.932 43 H 0.088 0.912 44 H 0.249 0.751 45 H 0.100 0.900 46 H 0.103 0.897 47 H 0.094 0.906 48 H 0.027 0.973 49 H 0.030 0.970 50 H 0.026 0.974 51 H 0.074 0.926 52 H 0.035 0.965 53 H 0.099 0.901 54 H 0.115 0.885 55 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 9.936 8.062 23.093 26.401 hybrid contribution -1.729 -1.621 0.723 2.477 sum 8.207 6.442 23.816 26.001 Atomic orbital electron populations 1.21851 0.94535 1.01935 1.02388 1.22016 0.96117 0.89241 1.00083 1.61939 1.05466 1.12071 1.46980 1.22228 0.99933 0.94050 0.91422 1.21599 0.96134 0.94971 1.02665 1.21559 0.95209 1.00311 0.98363 1.21628 1.00505 0.92616 0.99974 1.21897 0.87625 0.96811 0.96435 0.91813 1.21283 0.97927 0.97622 0.81120 1.44984 1.54764 1.33363 1.04626 1.16005 0.79748 0.82711 0.81141 1.90841 1.48580 1.26273 1.86561 1.47350 1.53221 1.31278 1.04539 1.21494 0.95337 0.98302 0.82723 1.22249 0.94627 0.91275 0.99323 1.62425 1.25859 1.26817 1.10605 1.19433 0.87191 0.94938 0.91024 1.21985 1.05534 1.34473 0.97624 0.92962 1.25737 1.00522 0.96944 0.95211 1.70049 1.30302 1.47084 1.08828 0.85652 0.79494 0.78884 0.78232 1.19488 1.20564 1.20066 1.22265 0.95817 0.99523 0.90034 1.21835 0.90532 0.87087 0.99997 0.91053 0.93063 0.92347 0.92538 0.94550 0.94701 0.90033 0.90419 0.91663 0.91806 0.90795 0.90409 0.91540 0.93229 0.91246 0.75106 0.90008 0.89652 0.90594 0.97332 0.97040 0.97389 0.92559 0.96466 0.90140 0.88460 0.89202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.74 9.42 71.98 0.68 -2.06 16 2 C 0.05 1.01 5.17 86.30 0.45 1.46 16 3 N -0.54 -8.85 4.11 -871.13 -3.58 -12.43 16 4 C 0.05 0.67 5.04 86.33 0.44 1.11 16 5 C -0.12 -1.28 6.09 30.65 0.19 -1.09 16 6 C -0.12 -1.16 6.00 30.67 0.18 -0.98 16 7 C -0.11 -1.33 5.25 30.65 0.16 -1.17 16 8 C 0.08 1.21 2.10 44.94 0.09 1.31 16 9 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 10 C 0.15 2.99 4.59 86.38 0.40 3.38 16 11 N -0.72 -17.20 4.96 -478.54 -2.37 -19.57 16 12 C 0.70 22.62 8.31 179.06 1.49 24.11 16 13 O -0.64 -25.38 15.77 -3.97 -0.06 -25.44 16 14 N -0.63 -19.66 3.01 -835.93 -2.52 -22.17 16 15 C 0.15 4.81 6.61 86.35 0.57 5.38 16 16 C 0.05 2.18 5.34 86.39 0.46 2.64 16 17 N -0.53 -22.31 4.83 -899.80 -4.35 -26.66 16 18 C 0.20 10.38 5.18 85.56 0.44 10.83 16 19 C -0.56 -30.85 7.87 25.60 0.20 -30.65 16 20 H 0.05 2.91 5.87 -2.91 -0.02 2.89 16 21 C 0.02 0.88 5.46 84.65 0.46 1.34 16 22 N -0.92 -54.58 13.29 21.45 0.28 -54.30 16 23 Si 0.95 44.30 29.54 68.60 2.03 46.32 16 24 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 25 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 26 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 27 C 0.05 1.93 5.02 86.39 0.43 2.37 16 28 C 0.13 3.50 6.55 86.35 0.57 4.06 16 29 H 0.07 1.06 6.19 -2.39 -0.01 1.04 16 30 H 0.05 1.09 8.14 -2.39 -0.02 1.08 16 31 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.06 1.38 6.48 -2.39 -0.02 1.37 16 33 H 0.04 0.64 8.14 -2.38 -0.02 0.62 16 34 H 0.03 0.44 8.14 -2.39 -0.02 0.42 16 35 H 0.08 1.10 5.84 -2.38 -0.01 1.08 16 36 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 38 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 39 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 40 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.07 0.91 7.07 -2.39 -0.02 0.89 16 42 H 0.05 1.21 6.68 -2.39 -0.02 1.19 16 43 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.41 8.61 4.79 -92.71 -0.44 8.17 16 45 H 0.08 2.83 7.04 -2.39 -0.02 2.81 16 46 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 47 H 0.08 2.98 7.97 -2.39 -0.02 2.96 16 48 H 0.01 0.38 7.58 -2.38 -0.02 0.36 16 49 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 50 H 0.01 0.45 7.93 -2.38 -0.02 0.43 16 51 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 52 H 0.02 0.73 6.30 -2.39 -0.02 0.71 16 53 H 0.08 2.88 8.11 -2.39 -0.02 2.86 16 54 H 0.10 2.14 5.72 -2.39 -0.01 2.13 16 55 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -67.61 406.70 -2.93 -70.54 By element: Atomic # 1 Polarization: 21.26 SS G_CDS: 0.42 Total: 21.68 kcal Atomic # 6 Polarization: 14.82 SS G_CDS: 7.21 Total: 22.03 kcal Atomic # 7 Polarization: -122.61 SS G_CDS: -12.53 Total: -135.13 kcal Atomic # 8 Polarization: -25.38 SS G_CDS: -0.06 Total: -25.44 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.32 kcal Total: -67.61 -2.93 -70.54 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601570122.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.750 kcal (2) G-P(sol) polarization free energy of solvation -67.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds