Wall clock time and date at job start Tue Mar 31 2020 22:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46907 * 109.46868 * 2 1 4 4 C 1.46847 * 110.99781 * 169.99493 * 3 2 1 5 5 C 1.53032 * 109.52038 * 185.83800 * 4 3 2 6 6 C 1.53121 * 109.28167 * 300.82225 * 5 4 3 7 7 C 1.52997 * 109.52222 * 177.56329 * 6 5 4 8 8 N 1.46502 * 109.46897 * 175.13273 * 7 6 5 9 9 C 1.34778 * 120.00021 * 180.02562 * 8 7 6 10 10 O 1.21594 * 119.99979 * 354.90573 * 9 8 7 11 11 N 1.34774 * 120.00366 * 174.91156 * 9 8 7 12 12 C 1.47076 * 120.88481 * 184.71000 * 11 9 8 13 13 C 1.53699 * 108.27629 * 128.75459 * 12 11 9 14 14 N 1.46902 * 109.25202 * 54.08496 * 13 12 11 15 15 C 1.46902 * 110.99582 * 172.60486 * 14 13 12 16 16 C 1.50704 * 109.47344 * 294.30099 * 15 14 13 17 17 H 1.08000 * 120.00077 * 0.02562 * 16 15 14 18 18 C 1.37881 * 119.99789 * 180.02562 * 16 15 14 19 19 N 1.31509 * 120.00071 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99607 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47143 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47369 * 119.99946 * 20 18 16 23 23 H 1.48504 * 109.46998 * 240.00073 * 20 18 16 24 24 C 1.46890 * 111.27007 * 296.75467 * 14 13 12 25 25 C 1.47080 * 120.87847 * 4.99181 * 11 9 8 26 26 C 1.53119 * 109.21096 * 57.62478 * 6 5 4 27 27 C 1.46847 * 111.00112 * 294.20684 * 3 2 1 28 28 H 1.08998 * 109.47587 * 300.00173 * 1 2 3 29 29 H 1.09002 * 109.46931 * 60.00356 * 1 2 3 30 30 H 1.09000 * 109.46652 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47145 * 240.00121 * 2 1 3 32 32 H 1.09002 * 109.46931 * 119.99644 * 2 1 3 33 33 H 1.09003 * 109.45621 * 65.82387 * 4 3 2 34 34 H 1.08993 * 109.46684 * 305.85663 * 4 3 2 35 35 H 1.09009 * 109.50099 * 180.88453 * 5 4 3 36 36 H 1.08996 * 109.50737 * 60.76581 * 5 4 3 37 37 H 1.09004 * 109.52256 * 297.68832 * 6 5 4 38 38 H 1.09004 * 109.46877 * 295.12222 * 7 6 5 39 39 H 1.09001 * 109.47649 * 55.12634 * 7 6 5 40 40 H 0.97000 * 120.00503 * 359.97438 * 8 7 6 41 41 H 1.08999 * 109.63348 * 248.52624 * 12 11 9 42 42 H 1.09001 * 109.62998 * 9.10685 * 12 11 9 43 43 H 1.08994 * 109.65143 * 294.08426 * 13 12 11 44 44 H 1.08998 * 109.41961 * 173.94940 * 13 12 11 45 45 H 1.09000 * 109.46776 * 54.30485 * 15 14 13 46 46 H 1.08997 * 109.46896 * 174.30185 * 15 14 13 47 47 H 0.97000 * 120.00282 * 179.97438 * 19 18 16 48 48 H 1.08995 * 109.49772 * 303.14371 * 24 14 13 49 49 H 1.09009 * 109.49459 * 183.06393 * 24 14 13 50 50 H 1.08996 * 109.62990 * 350.89997 * 25 11 9 51 51 H 1.09001 * 109.62928 * 111.47428 * 25 11 9 52 52 H 1.08998 * 109.50277 * 62.32057 * 26 6 5 53 53 H 1.08999 * 109.50437 * 182.43873 * 26 6 5 54 54 H 1.08999 * 109.46324 * 294.17864 * 27 3 2 55 55 H 1.09002 * 109.45681 * 54.15419 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3851 0.0000 4 6 3.4680 1.4312 0.2382 5 6 3.9173 2.8875 0.3763 6 6 3.5675 3.6483 -0.9057 7 6 3.9594 5.1191 -0.7504 8 7 3.7322 5.8212 -2.0160 9 6 4.0093 7.1364 -2.1163 10 8 4.3594 7.7606 -1.1333 11 7 3.8982 7.7597 -3.3060 12 6 4.2935 9.1680 -3.4603 13 6 5.2450 9.2726 -4.6628 14 7 4.6033 8.6754 -5.8416 15 6 5.4031 8.9094 -7.0514 16 6 5.4307 10.3847 -7.3579 17 1 4.9069 11.0791 -6.7177 18 6 6.1248 10.8478 -8.4556 19 7 6.7630 10.0023 -9.2348 20 14 6.1596 12.6765 -8.8350 21 1 5.3696 13.4092 -7.8130 22 1 7.5637 13.1595 -8.8158 23 1 5.5725 12.9147 -10.1781 24 6 4.3549 7.2412 -5.6439 25 6 3.3727 7.0515 -4.4831 26 6 2.0609 3.5441 -1.1583 27 6 1.6651 2.0686 -1.2504 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.9887 0.9683 -0.6001 34 1 3.7028 0.8902 1.1548 35 1 4.9949 2.9221 0.5374 36 1 3.4073 3.3471 1.2228 37 1 4.1087 3.2140 -1.7463 38 1 3.3535 5.5759 0.0322 39 1 5.0133 5.1879 -0.4808 40 1 3.3831 5.3394 -2.7821 41 1 3.4085 9.7796 -3.6355 42 1 4.8030 9.5062 -2.5581 43 1 6.1713 8.7412 -4.4446 44 1 5.4650 10.3216 -4.8607 45 1 6.4203 8.5528 -6.8890 46 1 4.9594 8.3724 -7.8897 47 1 7.2509 10.3281 -10.0072 48 1 5.2936 6.7380 -5.4120 49 1 3.9294 6.8169 -6.5534 50 1 3.2732 5.9898 -4.2574 51 1 2.4009 7.4636 -4.7548 52 1 1.5208 4.0142 -0.3365 53 1 1.8129 4.0474 -2.0927 54 1 2.1943 1.6028 -2.0816 55 1 0.5904 1.9906 -1.4147 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601583217.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:20 Heat of formation + Delta-G solvation = -42.584242 kcal Electronic energy + Delta-G solvation = -30065.715440 eV Core-core repulsion = 26136.343914 eV Total energy + Delta-G solvation = -3929.371526 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.51214 -40.21473 -39.08670 -36.87411 -35.98220 -34.64020 -34.19754 -32.13621 -31.80592 -31.07925 -29.92328 -27.73784 -26.86629 -24.70472 -24.40775 -24.00513 -23.37881 -22.15060 -22.02597 -20.89788 -20.29822 -19.15820 -18.49420 -17.40251 -17.03872 -16.76253 -16.73879 -16.15002 -16.05694 -15.92050 -15.42314 -15.38819 -15.34806 -15.29579 -15.04995 -14.73419 -14.35995 -14.21231 -14.03409 -13.93571 -13.53812 -13.37618 -13.08615 -13.04188 -12.74392 -12.61576 -12.59277 -12.52176 -12.35971 -12.30627 -12.16630 -12.10785 -11.95123 -11.75255 -11.61948 -11.45566 -11.31479 -11.15745 -11.11390 -10.62325 -10.24475 -9.58540 -9.23650 -9.03966 -8.20895 -6.30371 1.41940 1.42981 1.56142 1.60466 2.10245 2.40802 2.87176 2.97592 3.11688 3.23039 3.67303 3.77529 3.85425 3.94939 4.05434 4.13011 4.15189 4.25491 4.29884 4.33029 4.38167 4.43693 4.50576 4.54588 4.60173 4.61347 4.65117 4.71547 4.73760 4.83218 4.86344 4.88755 4.91832 4.95008 4.99432 5.02011 5.04563 5.14792 5.17471 5.20159 5.22864 5.24944 5.37640 5.43329 5.44743 5.54202 5.64422 5.92236 6.03661 6.19470 6.19886 6.25874 6.58473 6.85497 6.93144 7.39462 7.51255 8.90365 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.024558 B = 0.001862 C = 0.001796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.877649 B =15034.383866 C =15582.314994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.049 3.951 3 N -0.551 5.551 4 C 0.058 3.942 5 C -0.106 4.106 6 C -0.089 4.089 7 C 0.148 3.852 8 N -0.732 5.732 9 C 0.703 3.297 10 O -0.635 6.635 11 N -0.629 5.629 12 C 0.145 3.855 13 C 0.057 3.943 14 N -0.537 5.537 15 C 0.208 3.792 16 C -0.522 4.522 17 H 0.066 0.934 18 C 0.002 3.998 19 N -0.934 5.934 20 Si 0.968 3.032 21 H -0.262 1.262 22 H -0.281 1.281 23 H -0.278 1.278 24 C 0.037 3.963 25 C 0.128 3.872 26 C -0.108 4.108 27 C 0.055 3.945 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.068 0.932 31 H 0.032 0.968 32 H 0.078 0.922 33 H 0.033 0.967 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.080 0.920 38 H 0.057 0.943 39 H 0.054 0.946 40 H 0.407 0.593 41 H 0.079 0.921 42 H 0.084 0.916 43 H 0.009 0.991 44 H 0.080 0.920 45 H -0.042 1.042 46 H 0.012 0.988 47 H 0.264 0.736 48 H 0.018 0.982 49 H 0.090 0.910 50 H 0.108 0.892 51 H 0.088 0.912 52 H 0.064 0.936 53 H 0.074 0.926 54 H 0.033 0.967 55 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.612 -21.399 18.196 30.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.078 4.078 3 N -0.276 5.276 4 C -0.069 4.069 5 C -0.144 4.144 6 C -0.108 4.108 7 C 0.024 3.976 8 N -0.391 5.391 9 C 0.405 3.595 10 O -0.517 6.517 11 N -0.366 5.366 12 C 0.022 3.978 13 C -0.072 4.072 14 N -0.262 5.262 15 C 0.082 3.918 16 C -0.561 4.561 17 H 0.084 0.916 18 C -0.196 4.196 19 N -0.575 5.575 20 Si 0.793 3.207 21 H -0.186 1.186 22 H -0.207 1.207 23 H -0.204 1.204 24 C -0.092 4.092 25 C 0.005 3.995 26 C -0.146 4.146 27 C -0.073 4.073 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.050 0.950 32 H 0.096 0.904 33 H 0.052 0.948 34 H 0.101 0.899 35 H 0.096 0.904 36 H 0.088 0.912 37 H 0.098 0.902 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.246 0.754 41 H 0.097 0.903 42 H 0.103 0.897 43 H 0.027 0.973 44 H 0.098 0.902 45 H -0.024 1.024 46 H 0.030 0.970 47 H 0.073 0.927 48 H 0.036 0.964 49 H 0.108 0.892 50 H 0.126 0.874 51 H 0.106 0.894 52 H 0.083 0.917 53 H 0.093 0.907 54 H 0.052 0.948 55 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -11.933 -20.523 19.081 30.457 hybrid contribution 1.585 -0.074 -1.589 2.246 sum -10.348 -20.597 17.491 28.936 Atomic orbital electron populations 1.21786 0.94418 1.02101 1.02123 1.22100 0.96527 0.88289 1.00910 1.61992 1.14139 1.16104 1.35395 1.22063 0.87104 0.96758 1.01020 1.21527 1.01449 0.94523 0.96912 1.21374 0.97096 0.92700 0.99651 1.21237 1.00404 0.91440 0.84542 1.45167 1.70674 1.07093 1.16162 1.15993 0.78224 0.82459 0.82821 1.90863 1.57023 1.66516 1.37312 1.47417 1.67554 1.13031 1.08607 1.21579 0.98458 0.80797 0.97003 1.22365 0.94155 1.00605 0.90052 1.61995 1.48461 1.12663 1.03101 1.19387 0.88913 0.96344 0.87181 1.21506 1.30884 0.93108 1.10557 0.91624 1.25892 0.94937 1.02838 0.95961 1.70082 1.34342 1.36360 1.16698 0.85345 0.77781 0.79319 0.78244 1.18623 1.20733 1.20416 1.22529 0.98030 0.89146 0.99478 1.21838 0.97122 0.97478 0.83077 1.21620 0.94676 0.95879 1.02400 1.22126 1.01257 0.94088 0.89846 0.92506 0.92750 0.91324 0.94995 0.90380 0.94842 0.89947 0.90393 0.91191 0.90175 0.92483 0.92782 0.75437 0.90298 0.89735 0.97281 0.90197 1.02414 0.96996 0.92735 0.96361 0.89174 0.87391 0.89424 0.91687 0.90743 0.94837 0.90022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.84 71.98 0.71 -0.64 16 2 C 0.05 0.50 5.68 86.30 0.49 0.99 16 3 N -0.55 -6.80 4.66 -896.34 -4.18 -10.97 16 4 C 0.06 0.65 5.46 86.32 0.47 1.12 16 5 C -0.11 -1.24 5.38 30.65 0.16 -1.08 16 6 C -0.09 -1.13 2.29 -10.71 -0.02 -1.16 16 7 C 0.15 2.75 5.08 86.38 0.44 3.19 16 8 N -0.73 -15.37 5.22 -478.52 -2.50 -17.87 16 9 C 0.70 21.14 8.31 179.05 1.49 22.63 16 10 O -0.64 -24.20 15.83 -4.01 -0.06 -24.27 16 11 N -0.63 -18.49 3.00 -835.05 -2.51 -21.00 16 12 C 0.15 4.80 6.61 86.51 0.57 5.37 16 13 C 0.06 2.26 5.47 86.54 0.47 2.73 16 14 N -0.54 -22.27 4.62 -898.90 -4.15 -26.42 16 15 C 0.21 10.82 4.72 85.56 0.40 11.23 16 16 C -0.52 -29.03 8.41 25.60 0.22 -28.82 16 17 H 0.07 3.57 7.13 -2.91 -0.02 3.55 16 18 C 0.00 0.10 5.46 84.66 0.46 0.56 16 19 N -0.93 -55.61 13.29 21.45 0.28 -55.32 16 20 Si 0.97 43.90 29.54 68.60 2.03 45.93 16 21 H -0.26 -11.40 7.11 99.48 0.71 -10.70 16 22 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 23 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 24 C 0.04 1.20 5.62 86.38 0.49 1.69 16 25 C 0.13 3.06 6.59 86.35 0.57 3.63 16 26 C -0.11 -1.30 5.23 30.65 0.16 -1.14 16 27 C 0.05 0.63 5.29 86.33 0.46 1.09 16 28 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.05 0.51 6.43 -2.39 -0.02 0.50 16 30 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.03 0.33 8.12 -2.39 -0.02 0.31 16 32 H 0.08 0.72 7.99 -2.39 -0.02 0.70 16 33 H 0.03 0.38 8.14 -2.39 -0.02 0.36 16 34 H 0.08 0.81 8.01 -2.39 -0.02 0.79 16 35 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 36 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 38 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.41 6.32 5.17 -92.71 -0.48 5.84 16 41 H 0.08 2.48 8.14 -2.39 -0.02 2.47 16 42 H 0.08 2.88 7.09 -2.39 -0.02 2.86 16 43 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 44 H 0.08 3.38 6.67 -2.39 -0.02 3.36 16 45 H -0.04 -2.41 8.12 -2.39 -0.02 -2.43 16 46 H 0.01 0.66 7.97 -2.39 -0.02 0.64 16 47 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 48 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 49 H 0.09 2.73 7.99 -2.38 -0.02 2.71 16 50 H 0.11 1.73 5.63 -2.39 -0.01 1.71 16 51 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 52 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 53 H 0.07 0.79 7.26 -2.39 -0.02 0.77 16 54 H 0.03 0.39 8.14 -2.39 -0.02 0.37 16 55 H 0.08 0.90 6.21 -2.39 -0.01 0.88 16 Total: -1.00 -70.25 415.01 -3.18 -73.44 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: 0.37 Total: 15.11 kcal Atomic # 6 Polarization: 13.85 SS G_CDS: 7.53 Total: 21.39 kcal Atomic # 7 Polarization: -118.54 SS G_CDS: -13.05 Total: -131.59 kcal Atomic # 8 Polarization: -24.20 SS G_CDS: -0.06 Total: -24.27 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -70.25 -3.18 -73.44 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601583217.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.851 kcal (2) G-P(sol) polarization free energy of solvation -70.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds