Wall clock time and date at job start Tue Mar 31 2020 22:10:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09010 * 109.47227 * 2 1 4 4 N 1.46500 * 109.47151 * 119.99852 * 2 1 3 5 5 C 1.34778 * 119.99836 * 275.00142 * 4 2 1 6 6 O 1.21586 * 120.00168 * 355.01566 * 5 4 2 7 7 N 1.34773 * 120.00070 * 175.01433 * 5 4 2 8 8 C 1.47079 * 120.87914 * 4.93920 * 7 5 4 9 9 C 1.53703 * 108.27737 * 128.75360 * 8 7 5 10 10 N 1.46904 * 109.25602 * 54.08503 * 9 8 7 11 11 C 1.46895 * 110.99857 * 172.61021 * 10 9 8 12 12 C 1.50697 * 109.46868 * 294.29515 * 11 10 9 13 13 H 1.08004 * 120.00501 * 0.02562 * 12 11 10 14 14 C 1.37887 * 120.00047 * 179.97438 * 12 11 10 15 15 N 1.31509 * 119.99485 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00117 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47100 * 0.02562 * 16 14 12 18 18 H 1.48509 * 109.46633 * 120.00383 * 16 14 12 19 19 H 1.48498 * 109.47152 * 240.00271 * 16 14 12 20 20 C 1.46900 * 111.26406 * 296.75556 * 10 9 8 21 21 C 1.47074 * 120.88510 * 185.21457 * 7 5 4 22 22 C 1.53001 * 109.47315 * 240.00225 * 2 1 3 23 23 C 1.53117 * 109.52653 * 64.99999 * 22 2 1 24 24 C 1.53033 * 109.27916 * 182.44231 * 23 22 2 25 25 N 1.46856 * 109.52291 * 59.17935 * 24 23 22 26 26 C 1.46901 * 110.99767 * 174.16240 * 25 24 23 27 27 C 1.46848 * 111.19483 * 298.25535 * 25 24 23 28 28 C 1.53036 * 109.52413 * 61.74613 * 27 25 24 29 29 H 1.09002 * 109.47361 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47511 * 300.00218 * 1 2 3 31 31 H 1.09002 * 109.47078 * 59.99964 * 1 2 3 32 32 H 0.96992 * 120.00071 * 94.99862 * 4 2 1 33 33 H 1.08993 * 109.63349 * 248.52204 * 8 7 5 34 34 H 1.09001 * 109.63081 * 9.10473 * 8 7 5 35 35 H 1.08997 * 109.64723 * 294.08262 * 9 8 7 36 36 H 1.09000 * 109.44336 * 173.95914 * 9 8 7 37 37 H 1.08996 * 109.47663 * 54.29662 * 11 10 9 38 38 H 1.09000 * 109.46700 * 174.30180 * 11 10 9 39 39 H 0.97001 * 119.99769 * 179.97438 * 15 14 12 40 40 H 1.08998 * 109.49432 * 303.14479 * 20 10 9 41 41 H 1.09007 * 109.49057 * 183.06188 * 20 10 9 42 42 H 1.09002 * 109.62641 * 350.90386 * 21 7 5 43 43 H 1.09003 * 109.62918 * 111.47672 * 21 7 5 44 44 H 1.09002 * 109.52041 * 185.13047 * 22 2 1 45 45 H 1.09001 * 109.50307 * 62.49815 * 23 22 2 46 46 H 1.09010 * 109.53228 * 302.40470 * 23 22 2 47 47 H 1.09000 * 109.46428 * 299.16367 * 24 23 22 48 48 H 1.09001 * 109.46160 * 179.19147 * 24 23 22 49 49 H 1.08998 * 109.47183 * 59.99719 * 26 25 24 50 50 H 1.09001 * 109.46722 * 179.97438 * 26 25 24 51 51 H 1.09003 * 109.46635 * 299.99451 * 26 25 24 52 52 H 1.08998 * 109.46163 * 181.75988 * 27 25 24 53 53 H 1.09003 * 109.46466 * 301.73038 * 27 25 24 54 54 H 1.08996 * 109.50632 * 180.87703 * 28 27 25 55 55 H 1.09000 * 109.53628 * 60.77737 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3571 6 8 1.9450 1.1803 2.3912 7 7 2.4995 -0.6742 3.4804 8 6 2.8530 -2.1014 3.4416 9 6 4.2055 -2.2824 4.1490 10 7 4.1303 -1.6981 5.4948 11 6 5.3410 -2.0023 6.2691 12 6 5.4179 -3.4865 6.5185 13 1 4.6449 -4.1387 6.1393 14 6 6.4756 -4.0122 7.2299 15 7 7.4170 -3.2182 7.6912 16 14 6.5713 -5.8520 7.5385 17 1 5.3983 -6.5195 6.9191 18 1 7.8196 -6.3899 6.9401 19 1 6.5727 -6.1093 9.0010 20 6 3.8943 -0.2494 5.4342 21 6 2.5351 0.0164 4.7784 22 6 2.0400 -0.7212 -1.2493 23 6 1.6356 0.0686 -2.4971 24 6 2.0952 -0.6884 -3.7452 25 7 1.4781 -2.0208 -3.7660 26 6 1.7865 -2.7242 -5.0183 27 6 1.8898 -2.8148 -2.6013 28 6 1.4240 -2.1214 -1.3191 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 2.2489 -1.6317 1.1527 33 1 2.0871 -2.6825 3.9551 34 1 2.9333 -2.4307 2.4056 35 1 4.9875 -1.7817 3.5783 36 1 4.4352 -3.3451 4.2263 37 1 6.2200 -1.6818 5.7101 38 1 5.3045 -1.4752 7.2224 39 1 8.1610 -3.5879 8.1920 40 1 4.6807 0.2229 4.8455 41 1 3.8979 0.1622 6.4436 42 1 2.4049 1.0879 4.6267 43 1 1.7391 -0.3650 5.4181 44 1 3.1261 -0.8019 -1.2053 45 1 2.1060 1.0516 -2.4739 46 1 0.5519 0.1842 -2.5200 47 1 3.1803 -0.7909 -3.7288 48 1 1.7961 -0.1357 -4.6358 49 1 2.8662 -2.8375 -5.1150 50 1 1.3178 -3.7082 -5.0071 51 1 1.4044 -2.1489 -5.8616 52 1 1.4416 -3.8066 -2.6611 53 1 2.9758 -2.9073 -2.5902 54 1 1.7432 -2.7029 -0.4542 55 1 0.3370 -2.0409 -1.3224 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601583234.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:24 Heat of formation + Delta-G solvation = -38.390154 kcal Electronic energy + Delta-G solvation = -30731.374441 eV Core-core repulsion = 26802.184785 eV Total energy + Delta-G solvation = -3929.189656 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.62531 -40.30165 -39.07764 -37.11506 -35.95734 -34.54508 -33.86757 -32.08706 -31.79430 -30.77813 -29.73557 -27.49326 -27.15289 -24.96424 -24.63970 -24.26636 -23.75469 -22.52759 -21.76362 -20.55422 -20.12097 -19.06919 -18.48992 -17.43787 -16.92909 -16.63731 -16.49144 -16.10029 -16.04209 -15.98583 -15.56932 -15.49235 -15.46638 -15.28601 -14.97085 -14.58128 -14.40779 -14.10051 -13.97936 -13.69894 -13.49981 -13.32741 -13.20128 -13.04966 -12.79223 -12.73221 -12.61197 -12.49450 -12.46738 -12.35652 -12.30421 -12.11761 -11.83374 -11.75426 -11.60138 -11.36534 -11.26495 -11.14792 -11.09842 -10.62606 -10.21189 -9.59129 -9.26379 -9.05060 -8.20081 -6.30412 1.43132 1.44321 1.57381 1.62011 2.11747 2.41224 2.86803 3.03478 3.12504 3.22414 3.64122 3.78010 3.86837 3.94922 4.05149 4.15000 4.22304 4.24017 4.25105 4.38084 4.40377 4.43170 4.47110 4.50973 4.60713 4.63883 4.66195 4.73617 4.76377 4.80695 4.84264 4.93135 4.93630 4.93773 5.01207 5.01745 5.04640 5.07487 5.17358 5.18604 5.22550 5.25915 5.29539 5.44996 5.54962 5.63003 5.64215 5.94604 6.03186 6.15569 6.15903 6.27713 6.55277 6.85786 6.94379 7.39644 7.54019 8.91574 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.013520 B = 0.002397 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.549859 B =11680.831354 C =13228.039775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.167 3.833 3 H 0.065 0.935 4 N -0.730 5.730 5 C 0.705 3.295 6 O -0.633 6.633 7 N -0.630 5.630 8 C 0.128 3.872 9 C 0.051 3.949 10 N -0.536 5.536 11 C 0.207 3.793 12 C -0.518 4.518 13 H 0.071 0.929 14 C -0.002 4.002 15 N -0.937 5.937 16 Si 0.972 3.028 17 H -0.257 1.257 18 H -0.281 1.281 19 H -0.282 1.282 20 C 0.043 3.957 21 C 0.146 3.854 22 C -0.087 4.087 23 C -0.107 4.107 24 C 0.057 3.943 25 N -0.552 5.552 26 C 0.024 3.976 27 C 0.055 3.945 28 C -0.112 4.112 29 H 0.072 0.928 30 H 0.034 0.966 31 H 0.081 0.919 32 H 0.404 0.596 33 H 0.088 0.912 34 H 0.104 0.896 35 H 0.011 0.989 36 H 0.088 0.912 37 H -0.043 1.043 38 H 0.005 0.995 39 H 0.263 0.737 40 H 0.011 0.989 41 H 0.082 0.918 42 H 0.088 0.912 43 H 0.082 0.918 44 H 0.066 0.934 45 H 0.072 0.928 46 H 0.081 0.919 47 H 0.027 0.973 48 H 0.084 0.916 49 H 0.022 0.978 50 H 0.073 0.927 51 H 0.074 0.926 52 H 0.082 0.918 53 H 0.027 0.973 54 H 0.072 0.928 55 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.488 1.166 -24.657 28.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.062 3.938 3 H 0.083 0.917 4 N -0.388 5.388 5 C 0.407 3.593 6 O -0.515 6.515 7 N -0.366 5.366 8 C 0.005 3.995 9 C -0.078 4.078 10 N -0.261 5.261 11 C 0.081 3.919 12 C -0.557 4.557 13 H 0.089 0.911 14 C -0.199 4.199 15 N -0.578 5.578 16 Si 0.796 3.204 17 H -0.180 1.180 18 H -0.207 1.207 19 H -0.208 1.208 20 C -0.086 4.086 21 C 0.022 3.978 22 C -0.106 4.106 23 C -0.146 4.146 24 C -0.071 4.071 25 N -0.277 5.277 26 C -0.124 4.124 27 C -0.073 4.073 28 C -0.150 4.150 29 H 0.091 0.909 30 H 0.054 0.946 31 H 0.100 0.900 32 H 0.243 0.757 33 H 0.106 0.894 34 H 0.122 0.878 35 H 0.029 0.971 36 H 0.106 0.894 37 H -0.025 1.025 38 H 0.023 0.977 39 H 0.072 0.928 40 H 0.029 0.971 41 H 0.100 0.900 42 H 0.106 0.894 43 H 0.100 0.900 44 H 0.085 0.915 45 H 0.091 0.909 46 H 0.099 0.901 47 H 0.045 0.955 48 H 0.102 0.898 49 H 0.041 0.959 50 H 0.092 0.908 51 H 0.093 0.907 52 H 0.101 0.899 53 H 0.046 0.954 54 H 0.091 0.909 55 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -15.400 1.869 -24.294 28.824 hybrid contribution 2.582 -0.650 0.288 2.678 sum -12.819 1.220 -24.006 27.241 Atomic orbital electron populations 1.22225 0.94605 1.02851 1.01881 1.20815 0.94471 0.96038 0.82481 0.91681 1.45330 1.71082 1.14166 1.08243 1.15980 0.77705 0.84597 0.81001 1.90848 1.60658 1.14394 1.85614 1.47422 1.71127 1.11409 1.06689 1.21927 0.95924 0.80408 1.01271 1.22446 0.95861 1.00992 0.88530 1.62013 1.39140 1.10384 1.14531 1.19392 0.84717 0.96414 0.91386 1.21482 1.07410 0.92738 1.34036 0.91078 1.25967 0.95160 1.03353 0.95452 1.70108 1.12455 1.37196 1.38027 0.85296 0.78322 0.78954 0.77809 1.18041 1.20717 1.20786 1.22460 0.96419 0.89284 1.00457 1.21469 0.96244 0.97844 0.82207 1.21389 0.99971 0.95959 0.93291 1.21628 1.02697 0.98055 0.92181 1.22094 0.96102 0.89931 0.98992 1.61977 1.59470 1.03374 1.02867 1.22391 0.98843 0.99608 0.91584 1.22112 0.97753 0.97216 0.90225 1.21727 1.02050 0.94428 0.96776 0.90928 0.94645 0.90036 0.75688 0.89400 0.87835 0.97098 0.89412 1.02512 0.97694 0.92781 0.97052 0.89987 0.89403 0.89964 0.91545 0.90929 0.90058 0.95463 0.89795 0.95922 0.90793 0.90694 0.89930 0.95432 0.90927 0.89969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.68 8.75 71.98 0.63 -2.05 16 2 C 0.17 3.13 2.40 44.99 0.11 3.24 16 3 H 0.06 1.56 7.51 -2.38 -0.02 1.54 16 4 N -0.73 -15.75 4.92 -457.81 -2.25 -18.00 16 5 C 0.71 21.13 8.27 179.06 1.48 22.62 16 6 O -0.63 -23.62 15.43 -3.99 -0.06 -23.68 16 7 N -0.63 -18.54 3.00 -835.05 -2.51 -21.05 16 8 C 0.13 3.31 6.57 86.51 0.57 3.88 16 9 C 0.05 1.81 5.47 86.54 0.47 2.28 16 10 N -0.54 -22.44 4.62 -898.87 -4.15 -26.59 16 11 C 0.21 10.89 4.72 85.56 0.40 11.30 16 12 C -0.52 -28.29 8.41 25.60 0.22 -28.07 16 13 H 0.07 3.71 7.13 -2.91 -0.02 3.69 16 14 C 0.00 -0.09 5.46 84.66 0.46 0.38 16 15 N -0.94 -55.95 13.29 21.45 0.28 -55.66 16 16 Si 0.97 42.92 29.54 68.60 2.03 44.95 16 17 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 18 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 19 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 20 C 0.04 1.59 5.62 86.38 0.49 2.08 16 21 C 0.15 4.57 6.61 86.35 0.57 5.14 16 22 C -0.09 -1.22 2.19 -10.71 -0.02 -1.25 16 23 C -0.11 -1.33 5.18 30.64 0.16 -1.17 16 24 C 0.06 0.69 5.46 86.32 0.47 1.16 16 25 N -0.55 -7.06 4.91 -922.56 -4.53 -11.59 16 26 C 0.02 0.24 9.59 127.69 1.22 1.47 16 27 C 0.05 0.67 5.46 86.33 0.47 1.14 16 28 C -0.11 -1.34 4.80 30.65 0.15 -1.19 16 29 H 0.07 1.06 6.29 -2.39 -0.02 1.05 16 30 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.08 1.13 6.52 -2.39 -0.02 1.12 16 32 H 0.40 6.88 4.77 -92.71 -0.44 6.44 16 33 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.10 1.94 5.73 -2.39 -0.01 1.93 16 35 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 36 H 0.09 3.27 6.67 -2.39 -0.02 3.26 16 37 H -0.04 -2.49 8.12 -2.39 -0.02 -2.51 16 38 H 0.00 0.28 7.97 -2.39 -0.02 0.26 16 39 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 40 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 41 H 0.08 2.97 7.99 -2.38 -0.02 2.95 16 42 H 0.09 2.81 7.04 -2.39 -0.02 2.79 16 43 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 44 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 46 H 0.08 0.99 6.47 -2.38 -0.02 0.97 16 47 H 0.03 0.36 8.14 -2.39 -0.02 0.34 16 48 H 0.08 0.88 8.12 -2.39 -0.02 0.86 16 49 H 0.02 0.24 8.14 -2.39 -0.02 0.22 16 50 H 0.07 0.67 8.09 -2.39 -0.02 0.65 16 51 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 52 H 0.08 0.90 8.08 -2.39 -0.02 0.88 16 53 H 0.03 0.37 8.14 -2.39 -0.02 0.35 16 54 H 0.07 0.77 6.87 -2.39 -0.02 0.75 16 55 H 0.08 1.00 6.21 -2.39 -0.01 0.99 16 Total: -1.00 -69.59 409.46 -2.93 -72.52 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: 0.42 Total: 18.16 kcal Atomic # 6 Polarization: 13.10 SS G_CDS: 7.85 Total: 20.95 kcal Atomic # 7 Polarization: -119.74 SS G_CDS: -13.16 Total: -132.90 kcal Atomic # 8 Polarization: -23.62 SS G_CDS: -0.06 Total: -23.68 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Total: -69.59 -2.93 -72.52 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601583234.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.126 kcal (2) G-P(sol) polarization free energy of solvation -69.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds