Wall clock time and date at job start Tue Mar 31 2020 21:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53010 * 109.46992 * 2 1 4 4 N 1.46901 * 109.46929 * 119.99598 * 2 1 3 5 5 C 1.47844 * 110.99958 * 54.16011 * 4 2 1 6 6 C 1.55115 * 104.90445 * 146.23657 * 5 4 2 7 7 C 1.55137 * 101.56090 * 323.16217 * 6 5 4 8 8 H 1.09004 * 110.70274 * 276.96167 * 7 6 5 9 9 C 1.52994 * 110.70615 * 153.90771 * 7 6 5 10 10 N 1.46499 * 109.47606 * 68.80431 * 9 7 6 11 11 C 1.34775 * 120.00502 * 180.02562 * 10 9 7 12 12 O 1.21589 * 119.99577 * 5.07391 * 11 10 9 13 13 N 1.34775 * 120.00211 * 185.08065 * 11 10 9 14 14 C 1.47085 * 120.88171 * 175.00094 * 13 11 10 15 15 C 1.53239 * 108.51899 * 231.20562 * 14 13 11 16 16 N 1.46904 * 109.34027 * 306.16887 * 15 14 13 17 17 C 1.46899 * 111.00042 * 187.25564 * 16 15 14 18 18 C 1.50700 * 109.46976 * 169.99884 * 17 16 15 19 19 H 1.08003 * 120.00198 * 0.27314 * 18 17 16 20 20 C 1.37878 * 120.00046 * 180.02562 * 18 17 16 21 21 N 1.31515 * 119.99699 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00093 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47265 * 59.99803 * 22 20 18 24 24 H 1.48500 * 109.47244 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47351 * 299.99815 * 22 20 18 26 26 C 1.46899 * 111.26826 * 63.10319 * 16 15 14 27 27 C 1.47078 * 120.88084 * 355.01697 * 13 11 10 28 28 C 1.47445 * 111.00014 * 175.00064 * 4 2 1 29 29 H 1.08997 * 109.47382 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47825 * 300.00536 * 1 2 3 31 31 H 1.09004 * 109.46981 * 60.00207 * 1 2 3 32 32 H 1.08997 * 109.47546 * 240.00121 * 2 1 3 33 33 H 1.08998 * 109.47042 * 179.97438 * 3 2 1 34 34 H 1.09004 * 109.46357 * 299.99589 * 3 2 1 35 35 H 1.08997 * 109.46876 * 59.99710 * 3 2 1 36 36 H 1.08999 * 110.37571 * 265.19097 * 5 4 2 37 37 H 1.08996 * 110.37145 * 27.42057 * 5 4 2 38 38 H 1.08996 * 111.14747 * 205.04471 * 6 5 4 39 39 H 1.09006 * 110.92353 * 81.17032 * 6 5 4 40 40 H 1.09004 * 109.47293 * 308.79979 * 9 7 6 41 41 H 1.09002 * 109.47175 * 188.80228 * 9 7 6 42 42 H 0.97006 * 119.99859 * 359.97438 * 10 9 7 43 43 H 1.08999 * 109.63063 * 111.49297 * 14 13 11 44 44 H 1.09002 * 109.78468 * 351.00495 * 14 13 11 45 45 H 1.09004 * 109.49312 * 186.21267 * 15 14 13 46 46 H 1.08996 * 109.49453 * 66.12904 * 15 14 13 47 47 H 1.08997 * 109.46990 * 50.00104 * 17 16 15 48 48 H 1.08990 * 109.47078 * 289.99629 * 17 16 15 49 49 H 0.97002 * 119.99807 * 180.02562 * 21 20 18 50 50 H 1.08995 * 109.49222 * 56.85994 * 26 16 15 51 51 H 1.09004 * 109.48978 * 176.93703 * 26 16 15 52 52 H 1.08997 * 109.62941 * 248.50598 * 27 13 11 53 53 H 1.08999 * 109.63013 * 8.89616 * 27 13 11 54 54 H 1.09003 * 109.88709 * 117.33544 * 28 4 2 55 55 H 1.09001 * 110.01938 * 356.22884 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 1.4342 -2.0459 1.3060 6 6 2.5472 -2.9123 1.9514 7 6 3.8223 -2.3185 1.2968 8 1 3.9903 -2.7570 0.3131 9 6 5.0412 -2.5307 2.1967 10 7 5.3714 -3.9572 2.2436 11 6 6.4163 -4.3833 2.9806 12 8 7.0280 -3.5981 3.6789 13 7 6.7832 -5.6796 2.9434 14 6 7.9847 -6.1448 3.6528 15 6 8.8500 -6.9438 2.6724 16 7 8.0391 -8.0056 2.0616 17 6 8.8713 -8.9007 1.2466 18 6 8.0633 -10.1060 0.8400 19 1 7.0332 -10.1958 1.1517 20 6 8.6376 -11.0917 0.0656 21 7 9.8905 -10.9797 -0.3185 22 14 7.6359 -12.5854 -0.4391 23 1 6.4586 -12.1473 -1.2311 24 1 8.4771 -13.4903 -1.2629 25 1 7.1753 -13.3058 0.7750 26 6 6.9366 -7.4450 1.2692 27 6 5.9929 -6.6665 2.1920 28 6 3.4886 -0.8169 1.1752 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3635 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 3.1299 1.4426 0.0005 34 1 1.6766 1.9563 -0.8901 35 1 1.6765 1.9564 0.8899 36 1 0.5493 -2.0276 1.9422 37 1 1.1820 -2.4290 0.3173 38 1 2.4279 -3.9638 1.6907 39 1 2.5658 -2.7796 3.0332 40 1 4.8162 -2.1765 3.2028 41 1 5.8892 -1.9745 1.7970 42 1 4.8375 -4.5953 1.7448 43 1 7.6933 -6.7823 4.4875 44 1 8.5481 -5.2890 4.0248 45 1 9.6890 -7.3890 3.2072 46 1 9.2255 -6.2796 1.8940 47 1 9.7359 -9.2220 1.8275 48 1 9.2085 -8.3718 0.3553 49 1 10.2944 -11.6730 -0.8635 50 1 7.3387 -6.7739 0.5103 51 1 6.3879 -8.2537 0.7863 52 1 5.5100 -7.3542 2.8863 53 1 5.2359 -6.1541 1.5983 54 1 3.9208 -0.2717 2.0143 55 1 3.8808 -0.4246 0.2369 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601583307.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:59:02 Heat of formation + Delta-G solvation = -36.309978 kcal Electronic energy + Delta-G solvation = -30037.663103 eV Core-core repulsion = 26108.563650 eV Total energy + Delta-G solvation = -3929.099453 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.51946 -40.41632 -39.11005 -36.73626 -35.96346 -34.78107 -34.25913 -32.18985 -31.02938 -30.28153 -29.82463 -27.97092 -27.26518 -25.69430 -24.66610 -23.75746 -23.10946 -22.18261 -21.51576 -20.87832 -20.32098 -19.13572 -18.48029 -17.63045 -17.20464 -16.84997 -16.73541 -16.52649 -15.99765 -15.78792 -15.41232 -15.34894 -15.21563 -15.09883 -14.85928 -14.52622 -14.39086 -14.16763 -14.02838 -13.64963 -13.43801 -13.18785 -13.03743 -12.99220 -12.95096 -12.79284 -12.56314 -12.41229 -12.33702 -12.23552 -12.14581 -12.05084 -11.90381 -11.82665 -11.76086 -11.69129 -11.63552 -11.29584 -11.22276 -10.60185 -10.25907 -9.59437 -9.24336 -9.04332 -8.19141 -6.29628 1.44054 1.47140 1.54750 1.58844 2.09226 2.41726 2.83272 2.99297 3.13109 3.22739 3.57229 3.60444 3.85009 3.95950 4.05026 4.08344 4.12312 4.16362 4.24201 4.33612 4.37838 4.42022 4.44489 4.44866 4.50259 4.54529 4.72582 4.76981 4.81140 4.82405 4.84750 4.93921 4.93986 4.94566 4.97820 5.01960 5.02968 5.08963 5.12099 5.18584 5.23403 5.28049 5.34643 5.40185 5.43217 5.48842 5.64149 5.91336 6.03507 6.04388 6.20082 6.28275 6.55973 6.85863 6.91307 7.40269 7.50001 8.91883 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.015022 B = 0.002046 C = 0.001877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.470849 B =13679.554175 C =14916.966914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.067 3.933 3 C -0.143 4.143 4 N -0.534 5.534 5 C 0.044 3.956 6 C -0.122 4.122 7 C -0.112 4.112 8 H 0.089 0.911 9 C 0.155 3.845 10 N -0.733 5.733 11 C 0.705 3.295 12 O -0.634 6.634 13 N -0.629 5.629 14 C 0.146 3.854 15 C 0.043 3.957 16 N -0.537 5.537 17 C 0.207 3.793 18 C -0.521 4.521 19 H 0.071 0.929 20 C -0.001 4.001 21 N -0.936 5.936 22 Si 0.971 3.029 23 H -0.264 1.264 24 H -0.289 1.289 25 H -0.268 1.268 26 C 0.051 3.949 27 C 0.127 3.873 28 C 0.053 3.947 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.039 0.961 33 H 0.052 0.948 34 H 0.068 0.932 35 H 0.057 0.943 36 H 0.082 0.918 37 H 0.052 0.948 38 H 0.087 0.913 39 H 0.071 0.929 40 H 0.060 0.940 41 H 0.055 0.945 42 H 0.407 0.593 43 H 0.080 0.920 44 H 0.088 0.912 45 H 0.082 0.918 46 H 0.013 0.987 47 H 0.005 0.995 48 H -0.042 1.042 49 H 0.263 0.737 50 H 0.013 0.987 51 H 0.088 0.912 52 H 0.086 0.914 53 H 0.106 0.894 54 H 0.076 0.924 55 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.063 20.755 0.886 28.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.041 4.041 3 C -0.200 4.200 4 N -0.259 5.259 5 C -0.083 4.083 6 C -0.160 4.160 7 C -0.131 4.131 8 H 0.108 0.892 9 C 0.031 3.969 10 N -0.391 5.391 11 C 0.406 3.594 12 O -0.516 6.516 13 N -0.366 5.366 14 C 0.022 3.978 15 C -0.086 4.086 16 N -0.262 5.262 17 C 0.081 3.919 18 C -0.559 4.559 19 H 0.089 0.911 20 C -0.199 4.199 21 N -0.577 5.577 22 Si 0.796 3.204 23 H -0.188 1.188 24 H -0.214 1.214 25 H -0.193 1.193 26 C -0.078 4.078 27 C 0.004 3.996 28 C -0.076 4.076 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.057 0.943 33 H 0.071 0.929 34 H 0.087 0.913 35 H 0.076 0.924 36 H 0.100 0.900 37 H 0.071 0.929 38 H 0.106 0.894 39 H 0.090 0.910 40 H 0.078 0.922 41 H 0.073 0.927 42 H 0.246 0.754 43 H 0.098 0.902 44 H 0.106 0.894 45 H 0.100 0.900 46 H 0.032 0.968 47 H 0.023 0.977 48 H -0.024 1.024 49 H 0.072 0.928 50 H 0.031 0.969 51 H 0.106 0.894 52 H 0.104 0.896 53 H 0.124 0.876 54 H 0.094 0.906 55 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -19.867 21.302 2.065 29.202 hybrid contribution 0.812 -1.168 -2.011 2.463 sum -19.056 20.134 0.054 27.722 Atomic orbital electron populations 1.21868 0.93587 1.02231 1.02461 1.21880 0.96306 0.95487 0.90428 1.21849 1.00903 0.94937 1.02331 1.63710 1.05430 1.18171 1.38638 1.23066 0.97996 0.87247 0.99985 1.22834 0.92840 0.99826 1.00489 1.22546 0.94079 0.97224 0.99280 0.89241 1.21118 0.96519 0.79597 0.99677 1.45137 1.32122 1.09847 1.52032 1.15962 0.81174 0.81836 0.80412 1.90861 1.58819 1.55044 1.46862 1.47410 1.28782 1.06227 1.54140 1.21461 0.84845 0.97734 0.93720 1.22462 0.96388 0.92612 0.97122 1.62004 1.11947 1.17311 1.34906 1.19385 0.92255 0.90969 0.89278 1.21421 0.98840 1.04473 1.31148 0.91107 1.25957 0.96091 1.01775 0.96058 1.70096 1.14106 1.35752 1.37720 0.85402 0.78358 0.78277 0.78373 1.18845 1.21426 1.19258 1.22361 0.93678 0.97596 0.94205 1.21848 0.92786 0.90420 0.94524 1.22736 0.88458 0.94384 1.02008 0.92420 0.92281 0.91314 0.94311 0.92890 0.91307 0.92350 0.89962 0.92946 0.89415 0.91018 0.92175 0.92669 0.75450 0.90161 0.89405 0.89960 0.96838 0.97705 1.02385 0.92791 0.96876 0.89401 0.89583 0.87609 0.90602 0.91842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 8.97 71.98 0.65 -0.79 16 2 C 0.07 0.79 2.24 44.92 0.10 0.89 16 3 C -0.14 -1.56 9.15 71.99 0.66 -0.90 16 4 N -0.53 -7.25 5.03 -859.94 -4.33 -11.58 16 5 C 0.04 0.52 5.33 86.85 0.46 0.98 16 6 C -0.12 -1.43 6.35 32.05 0.20 -1.22 16 7 C -0.11 -1.44 2.97 -9.62 -0.03 -1.47 16 8 H 0.09 1.08 8.14 -2.38 -0.02 1.06 16 9 C 0.16 2.88 4.97 86.38 0.43 3.31 16 10 N -0.73 -15.41 5.35 -478.54 -2.56 -17.96 16 11 C 0.70 20.86 8.31 179.06 1.49 22.35 16 12 O -0.63 -23.54 15.83 -3.99 -0.06 -23.61 16 13 N -0.63 -18.25 3.01 -835.93 -2.52 -20.76 16 14 C 0.15 4.52 6.58 86.35 0.57 5.09 16 15 C 0.04 1.57 5.62 86.38 0.49 2.06 16 16 N -0.54 -22.17 4.62 -899.83 -4.16 -26.32 16 17 C 0.21 10.79 4.72 85.56 0.40 11.20 16 18 C -0.52 -28.20 8.42 25.60 0.22 -27.98 16 19 H 0.07 3.65 7.12 -2.91 -0.02 3.63 16 20 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 21 N -0.94 -55.54 13.29 21.45 0.28 -55.26 16 22 Si 0.97 42.66 29.54 68.60 2.03 44.68 16 23 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 24 H -0.29 -12.61 7.11 99.48 0.71 -11.90 16 25 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 26 C 0.05 1.76 5.46 86.38 0.47 2.23 16 27 C 0.13 3.22 6.60 86.35 0.57 3.79 16 28 C 0.05 0.71 5.76 86.64 0.50 1.21 16 29 H 0.06 0.55 6.74 -2.39 -0.02 0.54 16 30 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.07 0.55 8.14 -2.38 -0.02 0.53 16 32 H 0.04 0.48 8.10 -2.39 -0.02 0.46 16 33 H 0.05 0.60 6.81 -2.39 -0.02 0.59 16 34 H 0.07 0.60 8.14 -2.38 -0.02 0.58 16 35 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.08 0.94 8.14 -2.39 -0.02 0.93 16 37 H 0.05 0.57 7.32 -2.39 -0.02 0.55 16 38 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.07 1.00 7.98 -2.38 -0.02 0.98 16 40 H 0.06 1.26 8.06 -2.38 -0.02 1.24 16 41 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.41 6.51 5.90 -92.70 -0.55 5.97 16 43 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 44 H 0.09 2.77 7.11 -2.39 -0.02 2.75 16 45 H 0.08 2.93 7.99 -2.38 -0.02 2.91 16 46 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 47 H 0.00 0.27 7.97 -2.39 -0.02 0.25 16 48 H -0.04 -2.39 8.12 -2.39 -0.02 -2.40 16 49 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 50 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 51 H 0.09 3.21 6.66 -2.38 -0.02 3.20 16 52 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 53 H 0.11 1.88 5.63 -2.39 -0.01 1.86 16 54 H 0.08 1.12 7.82 -2.39 -0.02 1.11 16 55 H 0.06 0.80 6.67 -2.39 -0.02 0.79 16 Total: -1.00 -68.92 416.90 -3.37 -72.29 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: 0.30 Total: 17.36 kcal Atomic # 6 Polarization: 13.53 SS G_CDS: 7.63 Total: 21.16 kcal Atomic # 7 Polarization: -118.62 SS G_CDS: -13.27 Total: -131.89 kcal Atomic # 8 Polarization: -23.54 SS G_CDS: -0.06 Total: -23.61 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.68 kcal Total: -68.92 -3.37 -72.29 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601583307.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.980 kcal (2) G-P(sol) polarization free energy of solvation -68.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds