Wall clock time and date at job start Tue Mar 31 2020 21:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47619 * 2 1 4 4 N 1.46898 * 109.47315 * 178.28879 * 3 2 1 5 5 C 1.47902 * 110.99898 * 184.11493 * 4 3 2 6 6 C 1.53989 * 107.05738 * 145.84099 * 5 4 3 7 7 C 1.54600 * 105.14190 * 358.77963 * 6 5 4 8 8 H 1.08996 * 110.72297 * 96.57334 * 7 6 5 9 9 C 1.52998 * 110.72284 * 219.67996 * 7 6 5 10 10 N 1.46493 * 109.47307 * 293.54315 * 9 7 6 11 11 C 1.34779 * 120.00069 * 179.97438 * 10 9 7 12 12 O 1.21592 * 119.99936 * 4.95729 * 11 10 9 13 13 N 1.34780 * 120.00122 * 184.94538 * 11 10 9 14 14 C 1.47072 * 120.87881 * 354.55012 * 13 11 10 15 15 C 1.53243 * 108.51649 * 231.19945 * 14 13 11 16 16 N 1.46899 * 109.34147 * 306.17054 * 15 14 13 17 17 C 1.46897 * 111.00014 * 187.25345 * 16 15 14 18 18 C 1.50699 * 109.47186 * 170.00261 * 17 16 15 19 19 H 1.08002 * 119.99917 * 0.27011 * 18 17 16 20 20 C 1.37881 * 120.00026 * 180.02562 * 18 17 16 21 21 N 1.31510 * 120.00101 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99948 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47161 * 59.99769 * 22 20 18 24 24 H 1.48496 * 109.47180 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47168 * 299.99839 * 22 20 18 26 26 C 1.46899 * 111.26857 * 63.10515 * 16 15 14 27 27 C 1.47081 * 120.87782 * 174.56525 * 13 11 10 28 28 C 1.48529 * 110.99862 * 301.51231 * 4 3 2 29 29 H 1.08998 * 109.47378 * 300.00017 * 1 2 3 30 30 H 1.09006 * 109.47277 * 59.99979 * 1 2 3 31 31 H 1.08998 * 109.47465 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47031 * 239.99624 * 2 1 3 33 33 H 1.09006 * 109.47277 * 120.00021 * 2 1 3 34 34 H 1.09001 * 109.46992 * 58.28406 * 3 2 1 35 35 H 1.08999 * 109.47082 * 298.29028 * 3 2 1 36 36 H 1.09004 * 109.91453 * 26.49543 * 5 4 3 37 37 H 1.09000 * 110.08379 * 265.28903 * 5 4 3 38 38 H 1.08999 * 110.31370 * 239.85943 * 6 5 4 39 39 H 1.09007 * 110.38848 * 117.73511 * 6 5 4 40 40 H 1.08998 * 109.46623 * 173.54004 * 9 7 6 41 41 H 1.09002 * 109.46701 * 53.54571 * 9 7 6 42 42 H 0.97002 * 120.00103 * 0.02562 * 10 9 7 43 43 H 1.09000 * 109.63270 * 111.49838 * 14 13 11 44 44 H 1.09003 * 109.63361 * 350.90543 * 14 13 11 45 45 H 1.09005 * 109.49063 * 186.20987 * 15 14 13 46 46 H 1.09002 * 109.49627 * 66.13460 * 15 14 13 47 47 H 1.09000 * 109.47602 * 49.99786 * 17 16 15 48 48 H 1.09000 * 109.47280 * 290.00366 * 17 16 15 49 49 H 0.97001 * 120.00328 * 180.02562 * 21 20 18 50 50 H 1.09003 * 109.49010 * 56.85691 * 26 16 15 51 51 H 1.09000 * 109.49589 * 176.93327 * 26 16 15 52 52 H 1.09001 * 109.62581 * 248.50964 * 27 13 11 53 53 H 1.09000 * 109.63012 * 8.89226 * 27 13 11 54 54 H 1.08994 * 110.66789 * 81.84872 * 28 4 3 55 55 H 1.09002 * 110.67191 * 318.71419 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5085 1.4426 0.0414 5 6 4.0357 2.8208 0.1416 6 6 5.3112 2.7550 1.0020 7 6 5.4510 1.2686 1.4037 8 1 6.1351 0.7503 0.7319 9 6 5.9201 1.1418 2.8545 10 7 7.2854 1.6594 2.9733 11 6 7.9083 1.6495 4.1685 12 8 7.3731 1.1298 5.1287 13 7 9.1244 2.2156 4.2994 14 6 9.8413 2.7434 3.1287 15 6 11.2575 2.1580 3.1206 16 7 11.9008 2.4229 4.4144 17 6 13.3163 2.0308 4.3886 18 6 14.0004 2.5366 5.6324 19 1 13.4388 3.0900 6.3705 20 6 15.3422 2.2887 5.8305 21 7 16.0249 1.6103 4.9342 22 14 16.1904 2.9163 7.3719 23 1 15.5367 2.3309 8.5699 24 1 17.6215 2.5209 7.3453 25 1 16.0874 4.3968 7.4256 26 6 11.1888 1.7528 5.5107 27 6 9.7698 2.3215 5.6168 28 6 4.0071 0.7296 1.2452 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.6519 1.9651 0.8742 35 1 1.7020 1.9474 -0.9049 36 1 3.2987 3.4665 0.6191 37 1 4.2764 3.2026 -0.8506 38 1 5.2015 3.3781 1.8895 39 1 6.1775 3.0731 0.4218 40 1 5.9018 0.0934 3.1519 41 1 5.2566 1.7149 3.5022 42 1 7.7410 2.0099 2.1919 43 1 9.8948 3.8302 3.1914 44 1 9.3193 2.4515 2.2174 45 1 11.8384 2.6223 2.3236 46 1 11.2055 1.0820 2.9538 47 1 13.7964 2.4605 3.5095 48 1 13.3916 0.9441 4.3489 49 1 16.9688 1.4355 5.0737 50 1 11.1377 0.6825 5.3106 51 1 11.7199 1.9232 6.4472 52 1 9.8163 3.3679 5.9186 53 1 9.1986 1.7537 6.3512 54 1 4.0147 -0.3475 1.0788 55 1 3.4047 0.9808 2.1182 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601583422.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:59:05 Heat of formation + Delta-G solvation = -41.079435 kcal Electronic energy + Delta-G solvation = -29697.233598 eV Core-core repulsion = 25767.927326 eV Total energy + Delta-G solvation = -3929.306272 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.50995 -40.24316 -39.08316 -36.60315 -35.98062 -34.93193 -34.33041 -32.40265 -31.70138 -30.32735 -29.84217 -27.53502 -26.77555 -25.55075 -24.47331 -23.89510 -22.73836 -22.26096 -21.47519 -21.21964 -20.40284 -19.12894 -18.48482 -17.51768 -17.15332 -16.83728 -16.62325 -16.48311 -16.21832 -15.98506 -15.58610 -15.37093 -15.27549 -15.03900 -14.95625 -14.75735 -14.25505 -14.05782 -14.05573 -13.80123 -13.57270 -13.51316 -13.07750 -12.90214 -12.76778 -12.68843 -12.55536 -12.40609 -12.30910 -12.29512 -12.17292 -12.07708 -11.93244 -11.75965 -11.72864 -11.50938 -11.46121 -11.38651 -11.16067 -10.60353 -10.26319 -9.59215 -9.39567 -9.04065 -8.19826 -6.29674 1.43332 1.45851 1.53563 1.58890 2.08687 2.41436 2.83644 2.99942 3.12465 3.23260 3.60851 3.69345 3.82018 3.95702 4.06801 4.07858 4.12755 4.17401 4.26194 4.29079 4.36671 4.41769 4.44872 4.47119 4.56757 4.61844 4.66840 4.70155 4.72383 4.79002 4.82879 4.85261 4.86197 4.95224 4.97586 5.02551 5.04186 5.16425 5.17608 5.19621 5.23618 5.28557 5.30382 5.39799 5.44831 5.48944 5.64320 5.90621 5.92626 6.04071 6.09238 6.26021 6.58718 6.85509 6.92857 7.40074 7.50569 8.90995 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.034872 B = 0.001692 C = 0.001662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.744525 B =16540.757053 C =16843.638056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.121 4.121 3 C 0.047 3.953 4 N -0.527 5.527 5 C 0.035 3.965 6 C -0.125 4.125 7 C -0.093 4.093 8 H 0.096 0.904 9 C 0.152 3.848 10 N -0.731 5.731 11 C 0.704 3.296 12 O -0.636 6.636 13 N -0.629 5.629 14 C 0.128 3.872 15 C 0.036 3.964 16 N -0.536 5.536 17 C 0.208 3.792 18 C -0.525 4.525 19 H 0.066 0.934 20 C 0.003 3.997 21 N -0.934 5.934 22 Si 0.968 3.032 23 H -0.269 1.269 24 H -0.285 1.285 25 H -0.266 1.266 26 C 0.057 3.943 27 C 0.145 3.855 28 C 0.046 3.954 29 H 0.053 0.947 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.033 0.967 35 H 0.078 0.922 36 H 0.045 0.955 37 H 0.084 0.916 38 H 0.068 0.932 39 H 0.086 0.914 40 H 0.056 0.944 41 H 0.057 0.943 42 H 0.408 0.592 43 H 0.090 0.910 44 H 0.109 0.891 45 H 0.091 0.909 46 H 0.016 0.984 47 H 0.012 0.988 48 H -0.043 1.043 49 H 0.264 0.736 50 H 0.007 0.993 51 H 0.080 0.920 52 H 0.081 0.919 53 H 0.084 0.916 54 H 0.088 0.912 55 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.891 1.826 -12.692 31.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C -0.081 4.081 4 N -0.251 5.251 5 C -0.092 4.092 6 C -0.163 4.163 7 C -0.113 4.113 8 H 0.114 0.886 9 C 0.028 3.972 10 N -0.389 5.389 11 C 0.405 3.595 12 O -0.518 6.518 13 N -0.365 5.365 14 C 0.005 3.995 15 C -0.093 4.093 16 N -0.261 5.261 17 C 0.082 3.918 18 C -0.563 4.563 19 H 0.084 0.916 20 C -0.195 4.195 21 N -0.574 5.574 22 Si 0.793 3.207 23 H -0.194 1.194 24 H -0.211 1.211 25 H -0.191 1.191 26 C -0.072 4.072 27 C 0.021 3.979 28 C -0.083 4.083 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.052 0.948 35 H 0.097 0.903 36 H 0.064 0.936 37 H 0.103 0.897 38 H 0.086 0.914 39 H 0.105 0.895 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.247 0.753 43 H 0.108 0.892 44 H 0.127 0.873 45 H 0.109 0.891 46 H 0.034 0.966 47 H 0.030 0.970 48 H -0.025 1.025 49 H 0.073 0.927 50 H 0.025 0.975 51 H 0.098 0.902 52 H 0.099 0.901 53 H 0.103 0.897 54 H 0.106 0.894 55 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -28.997 1.664 -12.469 31.608 hybrid contribution 0.962 -0.423 0.976 1.434 sum -28.035 1.242 -11.493 30.325 Atomic orbital electron populations 1.21723 0.94823 1.02200 1.02009 1.21531 0.96227 0.95779 1.02370 1.22366 0.86907 0.97764 1.01074 1.64798 1.09318 1.12890 1.38121 1.22880 0.95985 0.89683 1.00694 1.22495 0.98525 0.95411 0.99863 1.22224 0.97384 0.97352 0.94320 0.88585 1.21148 0.80909 0.98752 0.96423 1.45087 1.16858 1.68062 1.08899 1.15983 0.80865 0.78763 0.83854 1.90865 1.67966 1.52607 1.40364 1.47411 1.17086 1.62353 1.09699 1.21844 0.90257 0.99752 0.87633 1.22543 0.95967 0.97975 0.92803 1.62006 1.03001 1.57989 1.03075 1.19377 0.83907 0.91652 0.96852 1.21445 0.94560 1.34658 1.05634 0.91598 1.25888 0.98213 0.95334 1.00083 1.70072 1.09105 1.41374 1.36899 0.85452 0.77008 0.79064 0.79193 1.19435 1.21056 1.19134 1.22278 0.94118 0.94277 0.96568 1.21491 0.90674 1.01787 0.83951 1.23150 0.93588 0.99831 0.91705 0.92798 0.92231 0.92132 0.91584 0.92192 0.94829 0.90329 0.93650 0.89739 0.91367 0.89483 0.92544 0.92471 0.75281 0.89223 0.87317 0.89116 0.96568 0.96992 1.02542 0.92738 0.97518 0.90185 0.90081 0.89724 0.89397 0.93462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.91 71.98 0.71 -0.55 16 2 C -0.12 -1.26 5.80 30.59 0.18 -1.08 16 3 C 0.05 0.53 4.83 86.30 0.42 0.94 16 4 N -0.53 -6.77 5.35 -883.04 -4.73 -11.50 16 5 C 0.04 0.40 6.70 86.44 0.58 0.98 16 6 C -0.12 -1.33 6.20 31.47 0.19 -1.14 16 7 C -0.09 -1.15 3.13 -9.59 -0.03 -1.18 16 8 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 9 C 0.15 2.69 5.01 86.38 0.43 3.12 16 10 N -0.73 -14.71 5.31 -478.54 -2.54 -17.25 16 11 C 0.70 20.74 8.30 179.05 1.49 22.23 16 12 O -0.64 -23.96 15.80 -4.01 -0.06 -24.03 16 13 N -0.63 -18.19 3.01 -835.93 -2.52 -20.70 16 14 C 0.13 3.01 6.53 86.35 0.56 3.58 16 15 C 0.04 1.17 5.62 86.38 0.49 1.66 16 16 N -0.54 -22.22 4.62 -899.82 -4.16 -26.38 16 17 C 0.21 10.88 4.72 85.56 0.40 11.28 16 18 C -0.52 -29.18 8.42 25.60 0.22 -28.96 16 19 H 0.07 3.56 7.12 -2.91 -0.02 3.54 16 20 C 0.00 0.17 5.46 84.66 0.46 0.63 16 21 N -0.93 -55.72 13.29 21.45 0.28 -55.43 16 22 Si 0.97 43.82 29.54 68.60 2.03 45.84 16 23 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 24 H -0.29 -12.67 7.11 99.48 0.71 -11.97 16 25 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 26 C 0.06 2.24 5.46 86.38 0.47 2.71 16 27 C 0.14 4.72 6.61 86.35 0.57 5.29 16 28 C 0.05 0.57 4.79 86.65 0.41 0.99 16 29 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.06 0.45 8.14 -2.38 -0.02 0.43 16 31 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.06 0.66 6.81 -2.38 -0.02 0.64 16 34 H 0.03 0.39 7.97 -2.39 -0.02 0.37 16 35 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.05 0.50 7.67 -2.38 -0.02 0.48 16 37 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.07 0.81 7.80 -2.39 -0.02 0.80 16 39 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 40 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.06 1.11 8.08 -2.39 -0.02 1.09 16 42 H 0.41 5.99 5.87 -92.71 -0.54 5.45 16 43 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 44 H 0.11 1.70 5.75 -2.39 -0.01 1.69 16 45 H 0.09 2.76 7.99 -2.38 -0.02 2.74 16 46 H 0.02 0.56 8.14 -2.39 -0.02 0.54 16 47 H 0.01 0.66 7.97 -2.39 -0.02 0.64 16 48 H -0.04 -2.50 8.12 -2.39 -0.02 -2.52 16 49 H 0.26 14.88 8.31 -92.71 -0.77 14.10 16 50 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 51 H 0.08 3.39 6.66 -2.39 -0.02 3.37 16 52 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 53 H 0.08 2.86 7.04 -2.39 -0.02 2.84 16 54 H 0.09 1.08 7.62 -2.39 -0.02 1.06 16 55 H 0.05 0.62 7.92 -2.39 -0.02 0.60 16 Total: -1.00 -70.25 420.27 -3.83 -74.08 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: 0.30 Total: 14.87 kcal Atomic # 6 Polarization: 12.93 SS G_CDS: 7.56 Total: 20.49 kcal Atomic # 7 Polarization: -117.61 SS G_CDS: -13.65 Total: -131.26 kcal Atomic # 8 Polarization: -23.96 SS G_CDS: -0.06 Total: -24.03 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.84 kcal Total: -70.25 -3.83 -74.08 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601583422.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.998 kcal (2) G-P(sol) polarization free energy of solvation -70.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds