Wall clock time and date at job start Tue Mar 31 2020 22:15:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47050 * 2 1 4 4 C 1.53004 * 109.46982 * 119.99617 * 2 1 3 5 5 N 1.46499 * 109.47208 * 295.00278 * 4 2 1 6 6 C 1.34777 * 119.99670 * 180.27336 * 5 4 2 7 7 O 1.21582 * 120.00158 * 354.71030 * 6 5 4 8 8 N 1.34775 * 119.99465 * 174.70958 * 6 5 4 9 9 C 1.47088 * 120.87812 * 184.71652 * 8 6 5 10 10 C 1.53696 * 108.27336 * 128.75626 * 9 8 6 11 11 N 1.46898 * 109.25872 * 54.08674 * 10 9 8 12 12 C 1.46897 * 111.00338 * 172.60616 * 11 10 9 13 13 C 1.50698 * 109.46891 * 294.30196 * 12 11 10 14 14 H 1.08000 * 120.00263 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00027 * 180.02562 * 13 12 11 16 16 N 1.31524 * 119.99725 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00161 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47152 * 90.00068 * 17 15 13 19 19 H 1.48504 * 109.46990 * 209.99464 * 17 15 13 20 20 H 1.48491 * 109.47037 * 329.99994 * 17 15 13 21 21 C 1.46909 * 111.26735 * 296.75676 * 11 10 9 22 22 C 1.47075 * 120.88670 * 5.00055 * 8 6 5 23 23 C 1.52997 * 109.47202 * 239.99570 * 2 1 3 24 24 N 1.46906 * 109.46909 * 65.00226 * 23 2 1 25 25 C 1.48536 * 110.99836 * 52.59979 * 24 23 2 26 26 C 1.54945 * 103.22373 * 159.71643 * 25 24 23 27 27 C 1.54588 * 102.92352 * 322.59108 * 26 25 24 28 28 C 1.47897 * 110.99977 * 169.99385 * 24 23 2 29 29 H 1.09004 * 109.47137 * 60.00195 * 1 2 3 30 30 H 1.08998 * 109.47050 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47113 * 300.00012 * 1 2 3 32 32 H 1.08999 * 109.46911 * 175.00123 * 4 2 1 33 33 H 1.09002 * 109.46846 * 54.99993 * 4 2 1 34 34 H 0.97000 * 119.99796 * 359.97438 * 5 4 2 35 35 H 1.08998 * 109.62607 * 248.52647 * 9 8 6 36 36 H 1.09001 * 109.62548 * 9.10726 * 9 8 6 37 37 H 1.08996 * 109.65166 * 294.07906 * 10 9 8 38 38 H 1.09000 * 109.41986 * 173.94871 * 10 9 8 39 39 H 1.09000 * 109.47092 * 54.29685 * 12 11 10 40 40 H 1.08994 * 109.47241 * 174.29679 * 12 11 10 41 41 H 0.97003 * 119.99555 * 180.02562 * 16 15 13 42 42 H 1.09004 * 109.48798 * 303.14132 * 21 11 10 43 43 H 1.08993 * 109.49175 * 183.06564 * 21 11 10 44 44 H 1.09001 * 109.62709 * 350.89176 * 22 8 6 45 45 H 1.08995 * 109.63201 * 111.47371 * 22 8 6 46 46 H 1.09001 * 109.46866 * 184.99538 * 23 2 1 47 47 H 1.08998 * 109.47533 * 305.00293 * 23 2 1 48 48 H 1.08996 * 110.66902 * 278.15651 * 25 24 23 49 49 H 1.09000 * 110.66632 * 41.29277 * 25 24 23 50 50 H 1.08994 * 110.72459 * 204.22623 * 26 25 24 51 51 H 1.09005 * 110.71616 * 80.94958 * 26 25 24 52 52 H 1.09001 * 110.30578 * 263.03654 * 27 26 25 53 53 H 1.09000 * 110.31057 * 140.87461 * 27 26 25 54 54 H 1.09005 * 109.92303 * 333.51397 * 28 24 23 55 55 H 1.09009 * 109.91616 * 94.60647 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6524 0.0354 2.4424 6 6 2.0007 -0.4104 3.6657 7 8 2.5518 -1.4874 3.7861 8 7 1.7381 0.3378 4.7555 9 6 2.2003 -0.0805 6.0877 10 6 2.9444 1.0998 6.7322 11 7 2.0760 2.2845 6.7206 12 6 2.6786 3.3866 7.4822 13 6 2.7588 3.0061 8.9381 14 1 2.3978 2.0422 9.2651 15 6 3.2921 3.8890 9.8530 16 7 3.7313 5.0631 9.4550 17 14 3.3909 3.4177 11.6579 18 1 4.6880 2.7453 11.9236 19 1 3.2863 4.6398 12.4951 20 1 2.2772 2.4934 11.9897 21 6 1.7634 2.7026 5.3474 22 6 0.9763 1.5911 4.6452 23 6 2.0400 -0.7213 -1.2492 24 7 1.6514 0.0373 -2.4456 25 6 2.0754 1.4568 -2.3368 26 6 2.0778 1.9398 -3.8090 27 6 2.6030 0.7053 -4.5771 28 6 2.3241 -0.4931 -3.6512 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.1263 -0.7994 1.2057 33 1 1.6053 -1.7197 1.2953 34 1 1.1488 0.8595 2.3517 35 1 1.3437 -0.3570 6.7023 36 1 2.8749 -0.9313 5.9907 37 1 3.8544 1.3103 6.1704 38 1 3.2018 0.8477 7.7610 39 1 3.6810 3.5850 7.1028 40 1 2.0655 4.2812 7.3736 41 1 4.1069 5.6841 10.0986 42 1 2.6899 2.8908 4.8048 43 1 1.1644 3.6129 5.3718 44 1 0.8412 1.8461 3.5941 45 1 0.0044 1.4722 5.1239 46 1 3.1264 -0.7994 -1.2055 47 1 1.6054 -1.7199 -1.2951 48 1 1.3596 2.0278 -1.7456 49 1 3.0746 1.5279 -1.9071 50 1 2.7506 2.7879 -3.9356 51 1 1.0687 2.1950 -4.1328 52 1 3.6733 0.8009 -4.7602 53 1 2.0663 0.5890 -5.5187 54 1 3.2622 -0.9731 -3.3723 55 1 1.6750 -1.2107 -4.1532 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601583664.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:26 Heat of formation + Delta-G solvation = -37.263954 kcal Electronic energy + Delta-G solvation = -29964.639313 eV Core-core repulsion = 26035.498492 eV Total energy + Delta-G solvation = -3929.140821 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.50415 -40.14783 -39.14878 -37.29525 -35.98765 -34.64633 -34.17991 -32.14791 -31.48933 -30.00357 -29.69194 -27.76235 -27.12601 -25.91973 -24.50427 -23.90011 -22.66693 -22.14150 -21.66070 -21.01601 -20.21408 -19.08386 -18.49298 -17.62114 -17.00658 -16.93582 -16.80099 -16.60580 -16.00819 -15.93155 -15.63453 -15.42413 -15.29110 -15.05563 -14.95382 -14.74062 -14.29580 -14.11757 -14.04580 -13.63409 -13.52665 -13.22351 -13.10969 -13.07607 -12.74307 -12.59620 -12.56485 -12.37812 -12.31748 -12.24506 -12.18509 -12.06531 -11.94780 -11.77657 -11.74819 -11.57758 -11.40502 -11.36903 -11.15993 -10.61765 -10.26595 -9.59637 -9.36854 -9.04138 -8.20625 -6.30181 1.42827 1.43248 1.54978 1.58023 2.08862 2.40855 2.80642 3.06706 3.11926 3.23318 3.67549 3.77805 3.88929 3.91734 3.95298 4.03757 4.06753 4.13441 4.18434 4.25320 4.37499 4.43181 4.44279 4.53788 4.56640 4.65294 4.71304 4.72295 4.75411 4.81412 4.85267 4.89382 4.94696 4.95904 4.98887 5.01974 5.08235 5.10717 5.17304 5.20165 5.22990 5.28075 5.31849 5.43566 5.44549 5.51182 5.64227 5.90629 5.95534 6.03704 6.07340 6.25833 6.58397 6.85357 6.91746 7.39543 7.49723 8.90383 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.021763 B = 0.001866 C = 0.001779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.284359 B =15000.010393 C =15737.835047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.090 4.090 3 H 0.083 0.917 4 C 0.147 3.853 5 N -0.731 5.731 6 C 0.704 3.296 7 O -0.635 6.635 8 N -0.629 5.629 9 C 0.145 3.855 10 C 0.057 3.943 11 N -0.538 5.538 12 C 0.208 3.792 13 C -0.523 4.523 14 H 0.065 0.935 15 C 0.002 3.998 16 N -0.934 5.934 17 Si 0.968 3.032 18 H -0.276 1.276 19 H -0.283 1.283 20 H -0.263 1.263 21 C 0.037 3.963 22 C 0.127 3.873 23 C 0.057 3.943 24 N -0.520 5.520 25 C 0.028 3.972 26 C -0.124 4.124 27 C -0.130 4.130 28 C 0.031 3.969 29 H 0.069 0.931 30 H 0.051 0.949 31 H 0.054 0.946 32 H 0.051 0.949 33 H 0.060 0.940 34 H 0.407 0.593 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.009 0.991 38 H 0.080 0.920 39 H -0.042 1.042 40 H 0.012 0.988 41 H 0.264 0.736 42 H 0.018 0.982 43 H 0.090 0.910 44 H 0.108 0.892 45 H 0.088 0.912 46 H 0.035 0.965 47 H 0.081 0.919 48 H 0.087 0.913 49 H 0.040 0.960 50 H 0.078 0.922 51 H 0.075 0.925 52 H 0.069 0.931 53 H 0.078 0.922 54 H 0.042 0.958 55 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.658 -8.315 -27.971 29.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.109 4.109 3 H 0.102 0.898 4 C 0.022 3.978 5 N -0.390 5.390 6 C 0.406 3.594 7 O -0.517 6.517 8 N -0.366 5.366 9 C 0.022 3.978 10 C -0.072 4.072 11 N -0.262 5.262 12 C 0.082 3.918 13 C -0.561 4.561 14 H 0.084 0.916 15 C -0.196 4.196 16 N -0.574 5.574 17 Si 0.793 3.207 18 H -0.201 1.201 19 H -0.208 1.208 20 H -0.188 1.188 21 C -0.092 4.092 22 C 0.005 3.995 23 C -0.072 4.072 24 N -0.244 5.244 25 C -0.099 4.099 26 C -0.162 4.162 27 C -0.168 4.168 28 C -0.097 4.097 29 H 0.088 0.912 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.246 0.754 35 H 0.097 0.903 36 H 0.103 0.897 37 H 0.027 0.973 38 H 0.098 0.902 39 H -0.024 1.024 40 H 0.030 0.970 41 H 0.073 0.927 42 H 0.037 0.963 43 H 0.109 0.891 44 H 0.126 0.874 45 H 0.106 0.894 46 H 0.053 0.947 47 H 0.099 0.901 48 H 0.105 0.895 49 H 0.059 0.941 50 H 0.096 0.904 51 H 0.093 0.907 52 H 0.088 0.912 53 H 0.097 0.903 54 H 0.061 0.939 55 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -7.191 -9.109 -27.669 30.004 hybrid contribution 1.993 0.790 0.868 2.313 sum -5.198 -8.319 -26.801 28.539 Atomic orbital electron populations 1.21703 0.93142 1.02172 1.02106 1.21328 0.97821 0.99956 0.91828 0.89843 1.21186 0.98975 0.95067 0.82593 1.45116 1.61008 1.29204 1.03686 1.15972 0.79075 0.83194 0.81207 1.90859 1.51326 1.23446 1.86053 1.47419 1.58274 1.24456 1.06436 1.21586 0.99114 0.95868 0.81264 1.22366 0.92993 0.91155 1.00676 1.61997 1.45407 1.06447 1.12381 1.19378 0.90647 0.88965 0.92788 1.21472 1.39555 1.02230 0.92873 0.91635 1.25896 0.94993 0.94807 1.03935 1.70084 1.42446 1.08632 1.36286 0.85395 0.78732 0.77743 0.78830 1.20122 1.20837 1.18760 1.22531 0.98821 0.98804 0.89013 1.21842 0.94869 0.81481 1.01352 1.22202 0.97885 0.98011 0.89100 1.64809 1.54782 1.02512 1.02318 1.23317 0.99100 0.89610 0.97888 1.22494 1.02107 0.97656 0.93933 1.22401 1.01461 0.94004 0.98963 1.22932 0.97368 0.97921 0.91472 0.91205 0.92959 0.92657 0.93089 0.92167 0.75354 0.90266 0.89723 0.97291 0.90167 1.02434 0.96987 0.92734 0.96347 0.89146 0.87391 0.89416 0.94666 0.90097 0.89508 0.94121 0.90359 0.90670 0.91211 0.90301 0.93914 0.90112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.63 8.95 71.98 0.64 -0.99 16 2 C -0.09 -1.17 2.11 -10.79 -0.02 -1.19 16 3 H 0.08 1.04 6.52 -2.39 -0.02 1.02 16 4 C 0.15 2.74 5.07 86.38 0.44 3.18 16 5 N -0.73 -15.46 5.20 -478.53 -2.49 -17.95 16 6 C 0.70 21.17 8.31 179.05 1.49 22.66 16 7 O -0.63 -24.13 15.83 -3.97 -0.06 -24.19 16 8 N -0.63 -18.50 3.00 -835.05 -2.51 -21.01 16 9 C 0.15 4.79 6.61 86.50 0.57 5.36 16 10 C 0.06 2.25 5.47 86.54 0.47 2.72 16 11 N -0.54 -22.28 4.62 -898.90 -4.15 -26.43 16 12 C 0.21 10.84 4.72 85.56 0.40 11.25 16 13 C -0.52 -29.06 8.41 25.60 0.22 -28.85 16 14 H 0.07 3.55 7.13 -2.91 -0.02 3.53 16 15 C 0.00 0.10 5.46 84.65 0.46 0.56 16 16 N -0.93 -55.59 13.29 21.45 0.28 -55.30 16 17 Si 0.97 43.88 29.54 68.60 2.03 45.90 16 18 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 19 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 20 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 21 C 0.04 1.21 5.62 86.38 0.49 1.69 16 22 C 0.13 3.06 6.59 86.35 0.57 3.63 16 23 C 0.06 0.74 4.42 86.30 0.38 1.12 16 24 N -0.52 -6.64 4.85 -882.99 -4.28 -10.93 16 25 C 0.03 0.33 5.09 86.65 0.44 0.77 16 26 C -0.12 -1.19 7.06 31.80 0.22 -0.96 16 27 C -0.13 -1.20 6.93 31.47 0.22 -0.98 16 28 C 0.03 0.35 6.69 86.45 0.58 0.93 16 29 H 0.07 0.86 7.75 -2.38 -0.02 0.84 16 30 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.05 0.63 7.18 -2.39 -0.02 0.61 16 32 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.41 6.44 5.15 -92.71 -0.48 5.97 16 35 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 36 H 0.08 2.87 7.09 -2.39 -0.02 2.86 16 37 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 38 H 0.08 3.38 6.67 -2.39 -0.02 3.37 16 39 H -0.04 -2.42 8.12 -2.39 -0.02 -2.44 16 40 H 0.01 0.66 7.97 -2.39 -0.02 0.65 16 41 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 42 H 0.02 0.62 8.14 -2.38 -0.02 0.60 16 43 H 0.09 2.74 7.99 -2.39 -0.02 2.72 16 44 H 0.11 1.75 5.63 -2.39 -0.01 1.74 16 45 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 46 H 0.04 0.49 7.81 -2.39 -0.02 0.47 16 47 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 48 H 0.09 0.95 7.56 -2.39 -0.02 0.93 16 49 H 0.04 0.51 8.01 -2.39 -0.02 0.49 16 50 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 51 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 52 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 53 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 54 H 0.04 0.49 7.57 -2.38 -0.02 0.48 16 55 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 Total: -1.00 -69.83 417.46 -3.24 -73.07 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: 0.37 Total: 15.94 kcal Atomic # 6 Polarization: 13.32 SS G_CDS: 7.57 Total: 20.90 kcal Atomic # 7 Polarization: -118.47 SS G_CDS: -13.15 Total: -131.62 kcal Atomic # 8 Polarization: -24.13 SS G_CDS: -0.06 Total: -24.19 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.90 kcal Total: -69.83 -3.24 -73.07 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601583664.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.802 kcal (2) G-P(sol) polarization free energy of solvation -69.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds