Wall clock time and date at job start Tue Mar 31 2020 22:22:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46905 * 111.00266 * 2 1 4 4 C 1.46906 * 111.00097 * 236.04687 * 2 1 3 5 5 C 1.53003 * 110.01339 * 306.32217 * 4 2 1 6 6 N 1.46501 * 109.47118 * 301.58050 * 5 4 2 7 7 C 1.34775 * 119.99547 * 185.00957 * 6 5 4 8 8 O 1.21588 * 120.00542 * 5.26864 * 7 6 5 9 9 N 1.34778 * 119.99477 * 185.26944 * 7 6 5 10 10 C 1.47083 * 120.88012 * 185.07088 * 9 7 6 11 11 C 1.53700 * 108.27654 * 128.75361 * 10 9 7 12 12 N 1.46903 * 109.25507 * 54.08646 * 11 10 9 13 13 C 1.46898 * 111.00003 * 172.60589 * 12 11 10 14 14 C 1.50699 * 109.47050 * 294.30022 * 13 12 11 15 15 H 1.07994 * 120.00271 * 359.97438 * 14 13 12 16 16 C 1.37884 * 119.99753 * 180.02562 * 14 13 12 17 17 N 1.31511 * 119.99735 * 359.97438 * 16 14 13 18 18 Si 1.86790 * 119.99868 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47401 * 89.99629 * 18 16 14 20 20 H 1.48500 * 109.47033 * 209.99981 * 18 16 14 21 21 H 1.48503 * 109.47325 * 330.00005 * 18 16 14 22 22 C 1.46903 * 111.26579 * 296.75515 * 12 11 10 23 23 C 1.47079 * 120.88245 * 5.35089 * 9 7 6 24 24 C 1.54264 * 110.03310 * 184.93072 * 4 2 1 25 25 C 1.54962 * 104.16130 * 217.13679 * 24 4 2 26 26 C 1.54894 * 102.77614 * 37.88583 * 25 24 4 27 27 C 1.53873 * 110.03082 * 67.71397 * 4 2 1 28 28 H 1.08995 * 109.47046 * 179.43858 * 1 2 3 29 29 H 1.09002 * 109.47039 * 59.44487 * 1 2 3 30 30 H 1.08997 * 109.47160 * 299.44160 * 1 2 3 31 31 H 1.09001 * 109.46550 * 64.77396 * 3 2 1 32 32 H 1.08998 * 109.47221 * 184.77025 * 3 2 1 33 33 H 1.08992 * 109.46826 * 304.77614 * 3 2 1 34 34 H 1.08994 * 109.47433 * 61.58236 * 5 4 2 35 35 H 1.09001 * 109.46706 * 181.58191 * 5 4 2 36 36 H 0.97004 * 119.99922 * 5.00564 * 6 5 4 37 37 H 1.08998 * 109.62909 * 248.52211 * 10 9 7 38 38 H 1.09002 * 109.62419 * 9.10673 * 10 9 7 39 39 H 1.08995 * 109.64790 * 294.08522 * 11 10 9 40 40 H 1.08997 * 109.44172 * 173.96282 * 11 10 9 41 41 H 1.08999 * 109.47114 * 54.30550 * 13 12 11 42 42 H 1.09005 * 109.46735 * 174.29723 * 13 12 11 43 43 H 0.97005 * 119.99424 * 179.97438 * 17 16 14 44 44 H 1.08999 * 109.49458 * 303.14311 * 22 12 11 45 45 H 1.09002 * 109.49326 * 183.06183 * 22 12 11 46 46 H 1.08994 * 109.62840 * 350.89662 * 23 9 7 47 47 H 1.09000 * 109.62709 * 111.47972 * 23 9 7 48 48 H 1.09006 * 110.48381 * 335.78621 * 24 4 2 49 49 H 1.08998 * 110.49047 * 98.42299 * 24 4 2 50 50 H 1.09004 * 110.72137 * 279.57329 * 25 24 4 51 51 H 1.09003 * 110.92520 * 156.29255 * 25 24 4 52 52 H 1.09002 * 110.48669 * 203.40799 * 26 25 24 53 53 H 1.09004 * 110.48483 * 80.76120 * 26 25 24 54 54 H 1.09001 * 110.02916 * 238.57236 * 27 4 2 55 55 H 1.09004 * 110.03102 * 359.97438 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7660 -1.1376 5 6 1.3882 -2.1703 -1.1494 6 7 1.6989 -2.8473 0.1121 7 6 1.3509 -4.1374 0.2880 8 8 0.8661 -4.7672 -0.6321 9 7 1.5403 -4.7293 1.4839 10 6 1.2716 -6.1637 1.6673 11 6 2.5079 -6.8068 2.3156 12 7 2.8453 -6.0766 3.5449 13 6 3.9112 -6.7615 4.2883 14 6 3.4047 -8.0926 4.7808 15 1 2.3921 -8.3990 4.5637 16 6 4.2338 -8.9189 5.5095 17 7 5.4667 -8.5455 5.7743 18 14 3.6062 -10.5691 6.1193 19 1 3.8784 -11.6109 5.0967 20 1 4.2977 -10.9248 7.3845 21 1 2.1436 -10.4837 6.3617 22 6 3.2168 -4.6855 3.2534 23 6 2.0154 -3.9568 2.6418 24 6 3.5329 -0.8558 -1.0480 25 6 4.0052 -0.7520 -2.5203 26 6 3.0250 0.2855 -3.1221 27 6 1.6726 -0.0410 -2.4559 28 1 -0.3633 -1.0276 -0.0101 29 1 -0.3633 0.5224 -0.8850 30 1 -0.3633 0.5051 0.8949 31 1 1.7168 1.8675 0.9297 32 1 3.0818 1.3436 -0.0855 33 1 1.5785 1.9206 -0.8441 34 1 0.3069 -2.0976 -1.2659 35 1 1.8057 -2.7397 -1.9798 36 1 2.1552 -2.3670 0.8207 37 1 0.4050 -6.2940 2.3154 38 1 1.0814 -6.6272 0.6992 39 1 3.3491 -6.7627 1.6240 40 1 2.2906 -7.8469 2.5584 41 1 4.7680 -6.9185 3.6330 42 1 4.2117 -6.1496 5.1389 43 1 6.0498 -9.1267 6.2873 44 1 4.0482 -4.6711 2.5487 45 1 3.5131 -4.1871 4.1764 46 1 2.3171 -2.9606 2.3185 47 1 1.2188 -3.8791 3.3818 48 1 3.9298 -0.0276 -0.4609 49 1 3.8348 -1.8100 -0.6161 50 1 3.9081 -1.7132 -3.0252 51 1 5.0320 -0.3905 -2.5751 52 1 2.9571 0.1638 -4.2031 53 1 3.3397 1.2983 -2.8702 54 1 1.0839 -0.6899 -3.1043 55 1 1.1248 0.8790 -2.2515 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601589420.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:41 Heat of formation + Delta-G solvation = -23.528358 kcal Electronic energy + Delta-G solvation = -31294.511536 eV Core-core repulsion = 27365.966335 eV Total energy + Delta-G solvation = -3928.545201 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.70629 -40.73032 -39.00524 -35.96192 -35.86832 -35.50578 -34.33125 -32.11265 -30.59767 -29.90495 -29.50381 -28.41851 -27.21007 -25.65128 -24.45713 -24.26805 -23.85445 -22.24416 -21.49183 -20.52526 -19.71838 -18.92592 -18.47776 -17.79925 -17.29080 -16.76447 -16.54528 -16.35296 -16.00133 -15.77852 -15.74321 -15.38501 -15.31934 -15.23729 -14.95134 -14.67177 -14.33030 -14.10403 -14.02197 -13.70028 -13.41470 -13.11284 -13.06215 -12.74285 -12.67429 -12.65655 -12.58309 -12.50770 -12.35259 -12.28834 -12.15726 -12.05451 -11.96553 -11.91401 -11.73344 -11.52234 -11.35603 -11.27841 -11.12709 -10.61119 -10.20302 -9.55156 -9.22058 -9.02312 -8.19911 -6.29452 1.43178 1.43728 1.55518 1.63686 2.12386 2.41525 2.81052 3.05655 3.12618 3.24296 3.49469 3.60952 3.81918 3.97217 4.07046 4.15557 4.20758 4.26649 4.28394 4.31170 4.39617 4.45331 4.51588 4.55979 4.57474 4.68661 4.68913 4.73969 4.74981 4.78623 4.80010 4.86689 4.92111 4.96032 5.03407 5.03828 5.06073 5.10419 5.18423 5.18645 5.22464 5.24384 5.33533 5.45895 5.47064 5.53135 5.65127 5.96499 6.04730 6.13125 6.14178 6.27707 6.59524 6.86212 6.98238 7.40243 7.54867 8.91275 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.021577 B = 0.002296 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.337987 B =12193.315273 C =12374.696598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.539 5.539 3 C 0.019 3.981 4 C 0.104 3.896 5 C 0.156 3.844 6 N -0.722 5.722 7 C 0.703 3.297 8 O -0.637 6.637 9 N -0.628 5.628 10 C 0.146 3.854 11 C 0.057 3.943 12 N -0.538 5.538 13 C 0.210 3.790 14 C -0.523 4.523 15 H 0.065 0.935 16 C 0.002 3.998 17 N -0.935 5.935 18 Si 0.968 3.032 19 H -0.275 1.275 20 H -0.283 1.283 21 H -0.263 1.263 22 C 0.039 3.961 23 C 0.131 3.869 24 C -0.116 4.116 25 C -0.126 4.126 26 C -0.115 4.115 27 C -0.146 4.146 28 H 0.058 0.942 29 H 0.034 0.966 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.035 0.965 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.410 0.590 37 H 0.078 0.922 38 H 0.084 0.916 39 H 0.009 0.991 40 H 0.080 0.920 41 H -0.042 1.042 42 H 0.011 0.989 43 H 0.264 0.736 44 H 0.018 0.982 45 H 0.089 0.911 46 H 0.105 0.895 47 H 0.085 0.915 48 H 0.088 0.912 49 H 0.057 0.943 50 H 0.057 0.943 51 H 0.077 0.923 52 H 0.070 0.930 53 H 0.075 0.925 54 H 0.065 0.935 55 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.283 23.883 -15.233 29.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.263 5.263 3 C -0.129 4.129 4 C 0.014 3.986 5 C 0.031 3.969 6 N -0.380 5.380 7 C 0.405 3.595 8 O -0.520 6.520 9 N -0.365 5.365 10 C 0.022 3.978 11 C -0.072 4.072 12 N -0.263 5.263 13 C 0.083 3.917 14 C -0.561 4.561 15 H 0.083 0.917 16 C -0.196 4.196 17 N -0.575 5.575 18 Si 0.793 3.207 19 H -0.201 1.201 20 H -0.208 1.208 21 H -0.188 1.188 22 C -0.090 4.090 23 C 0.008 3.992 24 C -0.153 4.153 25 C -0.164 4.164 26 C -0.153 4.153 27 C -0.186 4.186 28 H 0.077 0.923 29 H 0.052 0.948 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.054 0.946 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.250 0.750 37 H 0.096 0.904 38 H 0.103 0.897 39 H 0.027 0.973 40 H 0.098 0.902 41 H -0.024 1.024 42 H 0.029 0.971 43 H 0.073 0.927 44 H 0.037 0.963 45 H 0.107 0.893 46 H 0.123 0.877 47 H 0.103 0.897 48 H 0.107 0.893 49 H 0.076 0.924 50 H 0.076 0.924 51 H 0.096 0.904 52 H 0.089 0.911 53 H 0.094 0.906 54 H 0.084 0.916 55 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.763 23.199 -15.058 28.726 hybrid contribution 0.816 -0.652 -0.402 1.119 sum -6.948 22.547 -15.460 28.208 Atomic orbital electron populations 1.22442 0.87185 1.01864 1.01332 1.62165 1.08172 1.14774 1.41177 1.22526 1.01197 0.87737 1.01418 1.21927 0.95505 0.91287 0.89917 1.21312 0.99341 0.91117 0.85118 1.45027 1.63669 1.09772 1.19540 1.15993 0.78865 0.82342 0.82305 1.90850 1.53436 1.65308 1.42388 1.47392 1.69912 1.10277 1.08913 1.21574 0.96717 0.78928 1.00557 1.22369 0.95979 0.98980 0.89850 1.61998 1.42176 1.01843 1.20238 1.19366 0.87307 0.93540 0.91446 1.21471 0.98892 1.02262 1.33474 0.91657 1.25894 0.94958 1.02433 0.96328 1.70082 1.07621 1.38989 1.40825 0.85399 0.78775 0.78929 0.77629 1.20066 1.20815 1.18752 1.22518 0.96153 0.90311 1.00050 1.21781 0.96167 0.94080 0.87182 1.22547 0.92593 1.02532 0.97673 1.22519 0.99701 0.99265 0.94899 1.22283 0.93696 0.99312 0.99974 1.22741 0.98915 1.00752 0.96163 0.92307 0.94781 0.90589 0.90768 0.90457 0.94644 0.92374 0.92483 0.75033 0.90354 0.89722 0.97274 0.90166 1.02444 0.97087 0.92715 0.96337 0.89287 0.87748 0.89708 0.89350 0.92397 0.92391 0.90422 0.91107 0.90627 0.91598 0.90399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 8.89 127.69 1.13 1.39 16 2 N -0.54 -7.04 4.44 -894.56 -3.98 -11.01 16 3 C 0.02 0.18 8.90 127.69 1.14 1.32 16 4 C 0.10 1.47 0.25 4.25 0.00 1.47 16 5 C 0.16 3.16 3.72 86.38 0.32 3.48 16 6 N -0.72 -16.71 4.70 -478.53 -2.25 -18.96 16 7 C 0.70 21.97 8.30 179.05 1.49 23.46 16 8 O -0.64 -24.66 15.80 -3.99 -0.06 -24.72 16 9 N -0.63 -19.25 3.00 -835.03 -2.51 -21.76 16 10 C 0.15 4.93 6.61 86.50 0.57 5.50 16 11 C 0.06 2.29 5.47 86.54 0.47 2.77 16 12 N -0.54 -22.76 4.62 -898.86 -4.15 -26.91 16 13 C 0.21 11.04 4.72 85.56 0.40 11.44 16 14 C -0.52 -29.30 8.41 25.60 0.22 -29.09 16 15 H 0.07 3.58 7.13 -2.91 -0.02 3.55 16 16 C 0.00 0.11 5.46 84.66 0.46 0.57 16 17 N -0.93 -56.04 13.29 21.45 0.28 -55.75 16 18 Si 0.97 44.16 29.54 68.60 2.03 46.18 16 19 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 20 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 21 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 22 C 0.04 1.30 5.62 86.38 0.49 1.79 16 23 C 0.13 3.40 6.60 86.35 0.57 3.97 16 24 C -0.12 -1.63 5.61 31.69 0.18 -1.46 16 25 C -0.13 -1.59 6.91 31.91 0.22 -1.37 16 26 C -0.11 -1.18 6.83 31.67 0.22 -0.96 16 27 C -0.15 -1.73 5.11 31.32 0.16 -1.57 16 28 H 0.06 0.97 6.02 -2.39 -0.01 0.95 16 29 H 0.03 0.39 6.94 -2.39 -0.02 0.38 16 30 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.08 0.70 5.76 -2.39 -0.01 0.69 16 33 H 0.04 0.31 6.42 -2.39 -0.02 0.29 16 34 H 0.06 1.24 6.38 -2.39 -0.02 1.23 16 35 H 0.06 1.34 8.10 -2.39 -0.02 1.33 16 36 H 0.41 8.23 5.39 -92.71 -0.50 7.73 16 37 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 38 H 0.08 2.93 7.10 -2.39 -0.02 2.92 16 39 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 40 H 0.08 3.43 6.67 -2.39 -0.02 3.41 16 41 H -0.04 -2.45 8.12 -2.39 -0.02 -2.47 16 42 H 0.01 0.62 7.97 -2.38 -0.02 0.60 16 43 H 0.26 14.90 8.31 -92.70 -0.77 14.13 16 44 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 45 H 0.09 2.83 7.99 -2.39 -0.02 2.81 16 46 H 0.10 2.05 5.63 -2.39 -0.01 2.04 16 47 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 48 H 0.09 1.08 5.72 -2.38 -0.01 1.07 16 49 H 0.06 1.03 7.16 -2.39 -0.02 1.01 16 50 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 51 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 52 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 53 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 54 H 0.07 0.86 7.67 -2.39 -0.02 0.84 16 55 H 0.08 0.83 5.14 -2.39 -0.01 0.82 16 Total: -1.00 -68.81 405.15 -2.23 -71.04 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: 0.38 Total: 19.17 kcal Atomic # 6 Polarization: 14.69 SS G_CDS: 8.04 Total: 22.72 kcal Atomic # 7 Polarization: -121.79 SS G_CDS: -12.60 Total: -134.39 kcal Atomic # 8 Polarization: -24.66 SS G_CDS: -0.06 Total: -24.72 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.18 kcal Total: -68.81 -2.23 -71.04 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601589420.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.510 kcal (2) G-P(sol) polarization free energy of solvation -68.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds