Wall clock time and date at job start Tue Mar 31 2020 22:11:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47103 * 2 1 4 4 C 1.53004 * 109.46803 * 119.99381 * 2 1 3 5 5 N 1.46902 * 109.46890 * 175.84296 * 4 2 1 6 6 C 1.46847 * 110.99926 * 200.23786 * 5 4 2 7 7 C 1.53045 * 109.52230 * 174.15872 * 6 5 4 8 8 C 1.53115 * 109.27715 * 59.18091 * 7 6 5 9 9 C 1.53121 * 109.15982 * 302.34583 * 8 7 6 10 10 C 1.46840 * 111.00178 * 76.02834 * 5 4 2 11 11 N 1.46502 * 109.47570 * 239.99748 * 2 1 3 12 12 C 1.34778 * 119.99684 * 88.42921 * 11 2 1 13 13 O 1.21587 * 119.99978 * 4.82921 * 12 11 2 14 14 N 1.34776 * 119.99634 * 184.83383 * 12 11 2 15 15 C 1.47073 * 120.88181 * 175.02850 * 14 12 11 16 16 C 1.53246 * 108.52291 * 231.16362 * 15 14 12 17 17 N 1.46900 * 109.33609 * 306.16812 * 16 15 14 18 18 C 1.46896 * 110.99706 * 187.25215 * 17 16 15 19 19 C 1.50701 * 109.47185 * 169.99853 * 18 17 16 20 20 H 1.08008 * 120.00115 * 0.02562 * 19 18 17 21 21 C 1.37875 * 120.00167 * 180.02562 * 19 18 17 22 22 N 1.31520 * 120.00092 * 180.02562 * 21 19 18 23 23 Si 1.86792 * 120.00241 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.47207 * 90.00004 * 23 21 19 25 25 H 1.48503 * 109.47553 * 209.99946 * 23 21 19 26 26 H 1.48507 * 109.47032 * 329.99872 * 23 21 19 27 27 C 1.46901 * 111.26850 * 63.10615 * 17 16 15 28 28 C 1.47089 * 120.88048 * 355.00401 * 14 12 11 29 29 H 1.09004 * 109.47103 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47654 * 300.00270 * 1 2 3 31 31 H 1.09004 * 109.47039 * 60.00427 * 1 2 3 32 32 H 1.08992 * 109.47579 * 295.84178 * 4 2 1 33 33 H 1.08997 * 109.46767 * 55.84753 * 4 2 1 34 34 H 1.08994 * 109.46364 * 294.17445 * 6 5 4 35 35 H 1.08997 * 109.46323 * 54.14800 * 6 5 4 36 36 H 1.08994 * 109.50557 * 299.23865 * 7 6 5 37 37 H 1.08995 * 109.49944 * 179.12136 * 7 6 5 38 38 H 1.08994 * 109.52300 * 182.44130 * 8 7 6 39 39 H 1.09001 * 109.52274 * 62.24438 * 8 7 6 40 40 H 1.08995 * 109.50229 * 297.71019 * 9 8 7 41 41 H 1.09000 * 109.50335 * 177.59912 * 9 8 7 42 42 H 1.09007 * 109.46096 * 305.85599 * 10 5 4 43 43 H 1.09000 * 109.46108 * 65.82085 * 10 5 4 44 44 H 0.96996 * 119.99440 * 268.42962 * 11 2 1 45 45 H 1.08998 * 109.63435 * 111.45245 * 15 14 12 46 46 H 1.09005 * 109.62762 * 350.87215 * 15 14 12 47 47 H 1.08999 * 109.49296 * 186.20929 * 16 15 14 48 48 H 1.09000 * 109.49010 * 66.12929 * 16 15 14 49 49 H 1.09000 * 109.47580 * 290.00167 * 18 17 16 50 50 H 1.09004 * 109.47149 * 50.00339 * 18 17 16 51 51 H 0.96991 * 120.00192 * 180.02562 * 22 21 19 52 52 H 1.09000 * 109.49567 * 56.85062 * 27 17 16 53 53 H 1.09006 * 109.49265 * 176.90966 * 27 17 16 54 54 H 1.09001 * 109.62641 * 9.13231 * 28 14 12 55 55 H 1.08996 * 109.62430 * 248.55024 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 1.2494 5 7 3.5055 -0.8087 1.2003 6 6 3.9991 -1.8714 2.0854 7 6 5.5099 -2.0309 1.8999 8 6 6.2022 -0.7051 2.2279 9 6 5.6355 0.3945 1.3254 10 6 4.1212 0.4836 1.5275 11 7 2.0184 -0.6907 -1.1961 12 6 2.2129 -0.0032 -2.3390 13 8 2.0677 1.2039 -2.3545 14 7 2.5683 -0.6538 -3.4645 15 6 2.6800 0.0598 -4.7457 16 6 1.8666 -0.7003 -5.7988 17 7 2.3008 -2.1033 -5.8293 18 6 1.6686 -2.8259 -6.9411 19 6 2.3149 -4.1788 -7.0931 20 1 3.1150 -4.4726 -6.4298 21 6 1.8847 -5.0414 -8.0789 22 7 2.4484 -6.2223 -8.2112 23 14 0.5014 -4.5331 -9.2265 24 1 1.0708 -3.8522 -10.4170 25 1 -0.2516 -5.7380 -9.6584 26 1 -0.4150 -3.6049 -8.5164 27 6 2.0350 -2.7714 -4.5483 28 6 2.8553 -2.0963 -3.4440 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.7387 -0.1661 2.1377 33 1 1.6170 -1.7250 1.2874 34 1 3.7862 -1.6091 3.1216 35 1 3.5020 -2.8095 1.8388 36 1 5.7227 -2.3067 0.8671 37 1 5.8784 -2.8090 2.5683 38 1 7.2741 -0.8015 2.0554 39 1 6.0218 -0.4485 3.2718 40 1 5.8503 0.1568 0.2836 41 1 6.0939 1.3492 1.5833 42 1 3.7126 1.2559 0.8758 43 1 3.9076 0.7349 2.5664 44 1 2.2018 -1.6426 -1.1655 45 1 3.7254 0.1025 -5.0512 46 1 2.2856 1.0702 -4.6375 47 1 2.0267 -0.2486 -6.7777 48 1 0.8077 -0.6526 -5.5445 49 1 0.6057 -2.9521 -6.7348 50 1 1.7948 -2.2574 -7.8625 51 1 2.1461 -6.8290 -8.9049 52 1 0.9738 -2.6950 -4.3115 53 1 2.3169 -3.8219 -4.6206 54 1 2.5768 -2.5113 -2.4753 55 1 3.9176 -2.2608 -3.6243 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601590036.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:49 Heat of formation + Delta-G solvation = -37.355163 kcal Electronic energy + Delta-G solvation = -31128.665960 eV Core-core repulsion = 27199.521184 eV Total energy + Delta-G solvation = -3929.144776 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.46566 -40.03549 -39.09644 -36.90138 -35.90913 -34.48513 -33.94771 -32.35955 -31.73024 -31.31482 -30.21081 -27.37953 -27.12732 -24.73190 -24.30256 -23.89680 -23.49459 -22.41289 -21.48449 -20.64079 -20.46509 -19.09232 -18.87446 -17.49816 -17.09575 -16.59056 -16.44863 -16.22423 -16.00626 -15.80135 -15.54184 -15.39956 -15.22983 -15.14435 -14.82517 -14.59691 -14.42086 -14.33929 -14.24603 -13.75064 -13.58231 -13.46154 -13.22246 -13.03668 -12.91087 -12.71453 -12.66761 -12.50875 -12.31620 -12.20063 -12.11191 -11.99587 -11.86069 -11.81840 -11.61081 -11.39843 -11.25667 -11.13692 -11.11533 -10.76264 -10.11395 -9.52080 -9.21284 -9.02309 -8.26595 -6.29396 1.36263 1.37150 1.47103 1.70706 2.21924 2.35352 2.83940 3.02760 3.06252 3.17070 3.76847 3.90485 3.96896 3.99023 4.06736 4.08660 4.17715 4.24194 4.26485 4.33118 4.38605 4.42895 4.48558 4.51880 4.56559 4.64505 4.70739 4.72108 4.75154 4.78573 4.83336 4.86385 4.88465 4.94387 4.95590 5.01583 5.05497 5.08197 5.09499 5.14808 5.24565 5.28946 5.33121 5.48146 5.49260 5.54405 5.69801 5.91059 6.09249 6.16874 6.21343 6.32175 6.61721 6.76747 7.04353 7.34209 7.64285 8.89398 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.015180 B = 0.002560 C = 0.002408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.071869 B =10935.133484 C =11626.074572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.165 3.835 3 H 0.064 0.936 4 C 0.053 3.947 5 N -0.546 5.546 6 C 0.058 3.942 7 C -0.117 4.117 8 C -0.117 4.117 9 C -0.116 4.116 10 C 0.060 3.940 11 N -0.714 5.714 12 C 0.708 3.292 13 O -0.637 6.637 14 N -0.630 5.630 15 C 0.144 3.856 16 C 0.043 3.957 17 N -0.539 5.539 18 C 0.172 3.828 19 C -0.513 4.513 20 H 0.046 0.954 21 C 0.012 3.988 22 N -0.945 5.945 23 Si 0.942 3.058 24 H -0.266 1.266 25 H -0.283 1.283 26 H -0.255 1.255 27 C 0.054 3.946 28 C 0.132 3.868 29 H 0.068 0.932 30 H 0.083 0.917 31 H 0.035 0.965 32 H 0.064 0.936 33 H 0.094 0.906 34 H 0.038 0.962 35 H 0.082 0.918 36 H 0.057 0.943 37 H 0.078 0.922 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.050 0.950 41 H 0.070 0.930 42 H 0.057 0.943 43 H 0.040 0.960 44 H 0.404 0.596 45 H 0.073 0.927 46 H 0.089 0.911 47 H 0.091 0.909 48 H 0.023 0.977 49 H -0.016 1.016 50 H 0.029 0.971 51 H 0.266 0.734 52 H 0.023 0.977 53 H 0.077 0.923 54 H 0.102 0.898 55 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.543 11.789 24.797 27.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.059 3.941 3 H 0.083 0.917 4 C -0.076 4.076 5 N -0.271 5.271 6 C -0.069 4.069 7 C -0.155 4.155 8 C -0.155 4.155 9 C -0.154 4.154 10 C -0.068 4.068 11 N -0.370 5.370 12 C 0.410 3.590 13 O -0.520 6.520 14 N -0.366 5.366 15 C 0.021 3.979 16 C -0.086 4.086 17 N -0.263 5.263 18 C 0.045 3.955 19 C -0.551 4.551 20 H 0.064 0.936 21 C -0.186 4.186 22 N -0.586 5.586 23 Si 0.766 3.234 24 H -0.191 1.191 25 H -0.209 1.209 26 H -0.179 1.179 27 C -0.075 4.075 28 C 0.009 3.991 29 H 0.087 0.913 30 H 0.102 0.898 31 H 0.055 0.945 32 H 0.082 0.918 33 H 0.113 0.887 34 H 0.056 0.944 35 H 0.100 0.900 36 H 0.076 0.924 37 H 0.096 0.904 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.069 0.931 41 H 0.088 0.912 42 H 0.076 0.924 43 H 0.058 0.942 44 H 0.242 0.758 45 H 0.091 0.909 46 H 0.107 0.893 47 H 0.109 0.891 48 H 0.041 0.959 49 H 0.002 0.998 50 H 0.047 0.953 51 H 0.075 0.925 52 H 0.041 0.959 53 H 0.096 0.904 54 H 0.120 0.880 55 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.064 12.365 24.167 27.168 hybrid contribution -1.402 -0.412 -0.193 1.474 sum -0.337 11.952 23.974 26.790 Atomic orbital electron populations 1.22129 0.94582 1.02779 1.02143 1.20829 0.93486 0.96450 0.83288 0.91735 1.22404 0.87553 1.01956 0.95655 1.61792 1.05618 1.05716 1.53958 1.22129 0.95956 0.94684 0.94180 1.21581 0.94407 0.97530 1.01963 1.21551 0.99859 0.94822 0.99271 1.21543 0.94570 0.99307 0.99938 1.22034 0.95142 0.90960 0.98635 1.45008 1.70693 1.12352 1.08990 1.15925 0.77416 0.84674 0.80975 1.90829 1.61952 1.13807 1.85391 1.47365 1.72101 1.09608 1.07554 1.21457 1.00457 0.95370 0.80655 1.22519 0.96485 0.89535 1.00091 1.61800 1.59305 1.01559 1.03656 1.19936 0.91873 0.93199 0.90486 1.21222 1.18727 0.99021 1.16117 0.93607 1.25756 0.99144 0.94698 0.99003 1.70030 1.44190 1.09363 1.34995 0.85791 0.79779 0.78208 0.79595 1.19113 1.20863 1.17924 1.22313 0.96988 0.99148 0.89061 1.21709 1.00054 0.78802 0.98561 0.91299 0.89827 0.94549 0.91783 0.88742 0.94383 0.89961 0.92419 0.90370 0.91649 0.91649 0.93122 0.91158 0.92406 0.94210 0.75797 0.90861 0.89268 0.89076 0.95889 0.99815 0.95253 0.92457 0.95914 0.90434 0.87975 0.90791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.65 9.51 71.98 0.68 -1.96 16 2 C 0.17 3.10 2.69 44.99 0.12 3.22 16 3 H 0.06 1.55 6.26 -2.39 -0.01 1.53 16 4 C 0.05 0.69 4.58 86.30 0.40 1.08 16 5 N -0.55 -8.37 4.33 -896.37 -3.88 -12.25 16 6 C 0.06 0.72 5.43 86.33 0.47 1.19 16 7 C -0.12 -1.53 6.09 30.65 0.19 -1.34 16 8 C -0.12 -1.54 6.00 30.67 0.18 -1.35 16 9 C -0.12 -1.86 6.09 30.65 0.19 -1.67 16 10 C 0.06 0.98 5.29 86.33 0.46 1.44 16 11 N -0.71 -16.06 4.70 -457.80 -2.15 -18.21 16 12 C 0.71 21.42 8.30 179.05 1.49 22.91 16 13 O -0.64 -23.57 15.40 -3.99 -0.06 -23.63 16 14 N -0.63 -18.78 3.01 -835.91 -2.52 -21.30 16 15 C 0.14 4.41 6.58 86.35 0.57 4.98 16 16 C 0.04 1.43 5.62 86.39 0.49 1.91 16 17 N -0.54 -21.59 4.62 -899.80 -4.16 -25.75 16 18 C 0.17 8.08 3.79 85.56 0.32 8.40 16 19 C -0.51 -28.69 8.96 25.60 0.23 -28.46 16 20 H 0.05 2.82 7.37 -2.91 -0.02 2.80 16 21 C 0.01 0.66 5.47 84.65 0.46 1.13 16 22 N -0.95 -57.79 13.96 21.45 0.30 -57.49 16 23 Si 0.94 43.46 27.47 68.60 1.88 45.34 16 24 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 25 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 26 H -0.26 -11.14 6.54 99.48 0.65 -10.48 16 27 C 0.05 1.93 5.46 86.38 0.47 2.40 16 28 C 0.13 3.69 6.60 86.35 0.57 4.25 16 29 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.04 0.82 8.14 -2.38 -0.02 0.80 16 32 H 0.06 0.69 7.99 -2.39 -0.02 0.67 16 33 H 0.09 0.98 7.79 -2.39 -0.02 0.96 16 34 H 0.04 0.42 8.14 -2.39 -0.02 0.41 16 35 H 0.08 0.91 7.93 -2.39 -0.02 0.89 16 36 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.06 1.16 6.81 -2.38 -0.02 1.14 16 43 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 44 H 0.40 7.82 6.13 -92.71 -0.57 7.25 16 45 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 46 H 0.09 2.74 7.10 -2.38 -0.02 2.72 16 47 H 0.09 2.84 7.99 -2.39 -0.02 2.82 16 48 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 49 H -0.02 -0.75 7.18 -2.39 -0.02 -0.77 16 50 H 0.03 1.36 7.40 -2.38 -0.02 1.34 16 51 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 52 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 53 H 0.08 3.14 6.67 -2.38 -0.02 3.12 16 54 H 0.10 2.20 5.63 -2.39 -0.01 2.19 16 55 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -69.80 413.37 -3.08 -72.87 By element: Atomic # 1 Polarization: 22.07 SS G_CDS: 0.22 Total: 22.29 kcal Atomic # 6 Polarization: 10.84 SS G_CDS: 7.28 Total: 18.13 kcal Atomic # 7 Polarization: -122.60 SS G_CDS: -12.40 Total: -135.01 kcal Atomic # 8 Polarization: -23.57 SS G_CDS: -0.06 Total: -23.63 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 1.88 Total: 45.34 kcal Total: -69.80 -3.08 -72.87 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601590036.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.519 kcal (2) G-P(sol) polarization free energy of solvation -69.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds