Wall clock time and date at job start Tue Mar 31 2020 22:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.47042 * 2 1 4 4 C 1.52997 * 109.46996 * 240.00093 * 2 1 3 5 5 N 1.46897 * 109.47191 * 184.99955 * 4 2 1 6 6 C 1.46845 * 111.00382 * 294.21240 * 5 4 2 7 7 C 1.53031 * 109.52627 * 174.15951 * 6 5 4 8 8 C 1.53126 * 109.28095 * 59.17834 * 7 6 5 9 9 C 1.53120 * 109.15892 * 302.34524 * 8 7 6 10 10 C 1.46851 * 111.00098 * 169.99838 * 5 4 2 11 11 N 1.46495 * 109.46914 * 120.00145 * 2 1 3 12 12 C 1.34778 * 120.00011 * 274.99580 * 11 2 1 13 13 O 1.21583 * 119.99863 * 4.97398 * 12 11 2 14 14 N 1.34784 * 119.99770 * 184.97162 * 12 11 2 15 15 C 1.47075 * 120.87530 * 174.49710 * 14 12 11 16 16 C 1.53703 * 108.27520 * 128.75648 * 15 14 12 17 17 N 1.46899 * 109.25336 * 54.08357 * 16 15 14 18 18 C 1.46905 * 110.99808 * 172.61125 * 17 16 15 19 19 C 1.50699 * 109.46888 * 294.29478 * 18 17 16 20 20 H 1.07998 * 119.99753 * 0.02562 * 19 18 17 21 21 C 1.37873 * 119.99693 * 180.02562 * 19 18 17 22 22 N 1.31509 * 120.00533 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99708 * 180.02562 * 21 19 18 24 24 H 1.48508 * 109.47332 * 90.00135 * 23 21 19 25 25 H 1.48502 * 109.47228 * 209.99872 * 23 21 19 26 26 H 1.48492 * 109.47419 * 330.00050 * 23 21 19 27 27 C 1.46904 * 111.26612 * 296.75728 * 17 16 15 28 28 C 1.47077 * 120.88383 * 354.78233 * 14 12 11 29 29 H 1.09005 * 109.47547 * 59.99928 * 1 2 3 30 30 H 1.09004 * 109.47730 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.47066 * 299.99996 * 1 2 3 32 32 H 1.08999 * 109.47587 * 305.00092 * 4 2 1 33 33 H 1.08998 * 109.47629 * 64.99932 * 4 2 1 34 34 H 1.09000 * 109.45891 * 294.17681 * 6 5 4 35 35 H 1.09000 * 109.46266 * 54.13680 * 6 5 4 36 36 H 1.09004 * 109.50503 * 299.23498 * 7 6 5 37 37 H 1.09004 * 109.50633 * 179.11616 * 7 6 5 38 38 H 1.08999 * 109.52135 * 182.43938 * 8 7 6 39 39 H 1.08997 * 109.57244 * 62.28094 * 8 7 6 40 40 H 1.09002 * 109.50188 * 297.71327 * 9 8 7 41 41 H 1.09000 * 109.50605 * 177.59156 * 9 8 7 42 42 H 1.08995 * 109.46304 * 305.85653 * 10 5 4 43 43 H 1.08997 * 109.46371 * 65.82421 * 10 5 4 44 44 H 0.97007 * 120.00278 * 95.00215 * 11 2 1 45 45 H 1.09001 * 109.63096 * 248.52528 * 15 14 12 46 46 H 1.08999 * 109.63406 * 9.10324 * 15 14 12 47 47 H 1.09000 * 109.65001 * 294.08113 * 16 15 14 48 48 H 1.08998 * 109.44460 * 173.95476 * 16 15 14 49 49 H 1.08998 * 109.47212 * 54.29957 * 18 17 16 50 50 H 1.08999 * 109.46810 * 174.29995 * 18 17 16 51 51 H 0.97003 * 120.00729 * 180.02562 * 22 21 19 52 52 H 1.09000 * 109.49111 * 303.14226 * 27 17 16 53 53 H 1.09008 * 109.48941 * 183.06663 * 27 17 16 54 54 H 1.08998 * 109.62517 * 350.88991 * 28 14 12 55 55 H 1.08990 * 109.63089 * 111.47371 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2492 5 7 3.5039 -0.8267 -1.1905 6 6 4.1305 0.4992 -1.2658 7 6 5.6404 0.3641 -1.0560 8 6 6.2201 -0.5570 -2.1332 9 6 5.5168 -1.9154 -2.0646 10 6 4.0104 -1.7141 -2.2452 11 7 2.0182 -0.6906 1.1961 12 6 2.1470 -0.0183 2.3571 13 8 1.7735 1.1361 2.4357 14 7 2.6898 -0.6257 3.4309 15 6 2.9500 0.1227 4.6700 16 6 2.3264 -0.6527 5.8414 17 7 2.8306 -2.0324 5.8322 18 6 2.3979 -2.7590 7.0335 19 6 3.0386 -2.1435 8.2507 20 1 3.7006 -1.2971 8.1428 21 6 2.7796 -2.6612 9.5021 22 7 1.9740 -3.6922 9.6334 23 14 3.5732 -1.8978 11.0111 24 1 2.6936 -0.8269 11.5448 25 1 3.7681 -2.9415 12.0493 26 1 4.8887 -1.3182 10.6389 27 6 2.4213 -2.7411 4.6123 28 6 3.0433 -2.0528 3.3926 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3635 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.6053 -1.7198 -1.2952 33 1 1.7516 -0.1584 -2.1370 34 1 3.9377 0.9369 -2.2453 35 1 3.7125 1.1430 -0.4920 36 1 5.8344 -0.0607 -0.0711 37 1 6.1072 1.3465 -1.1276 38 1 7.2882 -0.6907 -1.9618 39 1 6.0615 -0.1140 -3.1164 40 1 5.7088 -2.3760 -1.0955 41 1 5.8951 -2.5615 -2.8567 42 1 3.5052 -2.6779 -2.1825 43 1 3.8182 -1.2662 -3.2201 44 1 2.2489 -1.6318 1.1526 45 1 4.0253 0.2181 4.8212 46 1 2.4979 1.1122 4.6021 47 1 1.2412 -0.6613 5.7389 48 1 2.5992 -0.1721 6.7809 49 1 1.3134 -2.6985 7.1238 50 1 2.6982 -3.8038 6.9539 51 1 1.7915 -4.0562 10.5139 52 1 1.3349 -2.7206 4.5269 53 1 2.7634 -3.7750 4.6602 54 1 2.6526 -2.5023 2.4797 55 1 4.1272 -2.1625 3.4234 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601590039.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:52 Heat of formation + Delta-G solvation = -40.759390 kcal Electronic energy + Delta-G solvation = -31079.950287 eV Core-core repulsion = 27150.657893 eV Total energy + Delta-G solvation = -3929.292394 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.47239 -40.04588 -39.04819 -36.88670 -35.92883 -34.44871 -33.92232 -32.29297 -31.71347 -31.33668 -29.69587 -27.34012 -27.11644 -24.80375 -24.27964 -23.95152 -23.73806 -22.48162 -21.45990 -20.64600 -20.43877 -19.03127 -18.47761 -17.47638 -17.15016 -16.73447 -16.39778 -16.17666 -15.95434 -15.65810 -15.62310 -15.35733 -15.27890 -15.05458 -14.88860 -14.61581 -14.35627 -14.25520 -14.00777 -13.69405 -13.65578 -13.30362 -13.11866 -13.08576 -12.77956 -12.73217 -12.64338 -12.56095 -12.34636 -12.29146 -12.14877 -12.09247 -11.93377 -11.71614 -11.59142 -11.33745 -11.23425 -11.11121 -11.06826 -10.61426 -10.12536 -9.50847 -9.22428 -9.01942 -8.20134 -6.29856 1.42856 1.43496 1.55351 1.69936 2.21384 2.41296 2.84951 3.05187 3.12320 3.24760 3.74423 3.91730 3.98031 4.00634 4.08572 4.09570 4.19044 4.21884 4.27948 4.33837 4.37996 4.46030 4.49910 4.55407 4.59885 4.66122 4.72659 4.73497 4.75022 4.80136 4.86181 4.87291 4.96164 4.96643 5.04118 5.04853 5.08720 5.10588 5.18691 5.24933 5.26438 5.30184 5.34799 5.50677 5.51267 5.64811 5.68774 6.02124 6.05340 6.15510 6.21359 6.28251 6.59639 6.85788 7.06514 7.39906 7.64371 8.91078 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.016975 B = 0.002394 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.124059 B =11693.215603 C =12241.199529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.166 3.834 3 H 0.062 0.938 4 C 0.054 3.946 5 N -0.542 5.542 6 C 0.059 3.941 7 C -0.115 4.115 8 C -0.118 4.118 9 C -0.115 4.115 10 C 0.057 3.943 11 N -0.713 5.713 12 C 0.706 3.294 13 O -0.639 6.639 14 N -0.630 5.630 15 C 0.147 3.853 16 C 0.058 3.942 17 N -0.537 5.537 18 C 0.209 3.791 19 C -0.523 4.523 20 H 0.065 0.935 21 C 0.002 3.998 22 N -0.935 5.935 23 Si 0.968 3.032 24 H -0.275 1.275 25 H -0.282 1.282 26 H -0.263 1.263 27 C 0.038 3.962 28 C 0.133 3.867 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.034 0.966 32 H 0.098 0.902 33 H 0.061 0.939 34 H 0.036 0.964 35 H 0.056 0.944 36 H 0.054 0.946 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.061 0.939 41 H 0.078 0.922 42 H 0.085 0.915 43 H 0.035 0.965 44 H 0.406 0.594 45 H 0.077 0.923 46 H 0.083 0.917 47 H 0.007 0.993 48 H 0.079 0.921 49 H -0.043 1.043 50 H 0.011 0.989 51 H 0.264 0.736 52 H 0.016 0.984 53 H 0.089 0.911 54 H 0.106 0.894 55 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.110 3.614 -29.364 29.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.060 3.940 3 H 0.080 0.920 4 C -0.074 4.074 5 N -0.267 5.267 6 C -0.069 4.069 7 C -0.153 4.153 8 C -0.156 4.156 9 C -0.153 4.153 10 C -0.070 4.070 11 N -0.369 5.369 12 C 0.408 3.592 13 O -0.521 6.521 14 N -0.366 5.366 15 C 0.023 3.977 16 C -0.071 4.071 17 N -0.262 5.262 18 C 0.083 3.917 19 C -0.561 4.561 20 H 0.083 0.917 21 C -0.196 4.196 22 N -0.576 5.576 23 Si 0.793 3.207 24 H -0.201 1.201 25 H -0.208 1.208 26 H -0.187 1.187 27 C -0.091 4.091 28 C 0.010 3.990 29 H 0.100 0.900 30 H 0.088 0.912 31 H 0.053 0.947 32 H 0.116 0.884 33 H 0.079 0.921 34 H 0.054 0.946 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.097 0.903 42 H 0.104 0.896 43 H 0.054 0.946 44 H 0.245 0.755 45 H 0.095 0.905 46 H 0.102 0.898 47 H 0.025 0.975 48 H 0.097 0.903 49 H -0.026 1.026 50 H 0.029 0.971 51 H 0.073 0.927 52 H 0.034 0.966 53 H 0.107 0.893 54 H 0.124 0.876 55 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 4.428 4.126 -28.780 29.409 hybrid contribution -1.035 0.109 0.691 1.250 sum 3.392 4.236 -28.089 28.608 Atomic orbital electron populations 1.22125 0.94801 1.02748 1.02051 1.20830 0.93659 0.96174 0.83324 0.92008 1.22391 0.87710 1.01988 0.95298 1.61850 1.04892 1.11744 1.48200 1.22018 0.95188 0.90207 0.99470 1.21538 0.94397 0.99919 0.99472 1.21556 0.99834 0.95737 0.98434 1.21575 0.94210 0.97074 1.02453 1.22125 0.96010 0.97025 0.91833 1.44990 1.70537 1.13997 1.07421 1.15970 0.78048 0.84163 0.81026 1.90840 1.58014 1.18714 1.84544 1.47364 1.65350 1.11198 1.12713 1.21533 1.00503 0.94660 0.81018 1.22353 0.95309 0.90447 0.99010 1.62007 1.59678 1.02136 1.02348 1.19368 0.91554 0.93270 0.87487 1.21469 1.27628 1.15581 0.91425 0.91659 1.25896 0.95803 0.95476 1.02439 1.70078 1.37733 1.25215 1.24525 0.85398 0.79103 0.77967 0.78256 1.20090 1.20779 1.18693 1.22528 0.96936 0.98898 0.90724 1.21733 1.00963 0.78928 0.97337 0.89965 0.91222 0.94715 0.88351 0.92102 0.94575 0.92598 0.92721 0.91564 0.91612 0.91921 0.91985 0.90326 0.89644 0.94630 0.75517 0.90457 0.89846 0.97500 0.90315 1.02574 0.97076 0.92707 0.96585 0.89315 0.87604 0.89876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.77 9.48 71.98 0.68 -2.08 16 2 C 0.17 3.06 2.32 44.99 0.10 3.16 16 3 H 0.06 1.45 6.18 -2.39 -0.01 1.44 16 4 C 0.05 0.66 4.52 86.30 0.39 1.05 16 5 N -0.54 -7.51 4.38 -896.38 -3.93 -11.44 16 6 C 0.06 0.95 5.29 86.32 0.46 1.40 16 7 C -0.12 -1.79 6.09 30.65 0.19 -1.60 16 8 C -0.12 -1.42 6.00 30.68 0.18 -1.24 16 9 C -0.12 -1.28 6.09 30.65 0.19 -1.09 16 10 C 0.06 0.61 5.46 86.33 0.47 1.08 16 11 N -0.71 -15.58 4.71 -457.83 -2.16 -17.73 16 12 C 0.71 21.73 8.27 179.05 1.48 23.21 16 13 O -0.64 -24.54 15.47 -3.98 -0.06 -24.60 16 14 N -0.63 -19.24 3.00 -835.06 -2.51 -21.75 16 15 C 0.15 5.01 6.64 86.51 0.57 5.58 16 16 C 0.06 2.36 5.47 86.54 0.47 2.83 16 17 N -0.54 -22.94 4.62 -898.85 -4.15 -27.09 16 18 C 0.21 11.12 4.72 85.56 0.40 11.52 16 19 C -0.52 -29.49 8.41 25.60 0.22 -29.27 16 20 H 0.07 3.60 7.13 -2.91 -0.02 3.57 16 21 C 0.00 0.10 5.46 84.65 0.46 0.57 16 22 N -0.93 -56.31 13.29 21.44 0.28 -56.02 16 23 Si 0.97 44.32 29.54 68.60 2.03 46.35 16 24 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 25 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 26 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 27 C 0.04 1.29 5.62 86.38 0.49 1.78 16 28 C 0.13 3.44 6.53 86.35 0.56 4.00 16 29 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 30 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 31 H 0.03 0.84 8.10 -2.38 -0.02 0.82 16 32 H 0.10 0.89 7.99 -2.39 -0.02 0.87 16 33 H 0.06 0.62 8.12 -2.39 -0.02 0.60 16 34 H 0.04 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.06 1.15 6.32 -2.39 -0.02 1.14 16 36 H 0.05 1.04 8.14 -2.38 -0.02 1.02 16 37 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 38 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 42 H 0.09 0.74 8.01 -2.39 -0.02 0.72 16 43 H 0.04 0.36 8.14 -2.39 -0.02 0.34 16 44 H 0.41 7.26 6.14 -92.70 -0.57 6.69 16 45 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 46 H 0.08 2.94 7.04 -2.39 -0.02 2.92 16 47 H 0.01 0.29 8.14 -2.39 -0.02 0.28 16 48 H 0.08 3.42 6.67 -2.39 -0.02 3.40 16 49 H -0.04 -2.55 8.12 -2.39 -0.02 -2.57 16 50 H 0.01 0.63 7.97 -2.39 -0.02 0.61 16 51 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 52 H 0.02 0.57 8.14 -2.39 -0.02 0.55 16 53 H 0.09 2.83 7.99 -2.38 -0.02 2.81 16 54 H 0.11 1.97 5.74 -2.39 -0.01 1.96 16 55 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -70.49 416.52 -2.89 -73.39 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: 0.28 Total: 18.00 kcal Atomic # 6 Polarization: 13.58 SS G_CDS: 7.32 Total: 20.90 kcal Atomic # 7 Polarization: -121.58 SS G_CDS: -12.46 Total: -134.04 kcal Atomic # 8 Polarization: -24.54 SS G_CDS: -0.06 Total: -24.60 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -70.49 -2.89 -73.39 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601590039.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.630 kcal (2) G-P(sol) polarization free energy of solvation -70.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds