Wall clock time and date at job start Tue Mar 31 2020 21:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47174 * 2 1 4 4 C 1.53002 * 109.47145 * 239.99871 * 2 1 3 5 5 N 1.46906 * 109.47366 * 120.00005 * 2 1 3 6 6 C 1.48527 * 111.00336 * 173.93531 * 5 2 1 7 7 C 1.54936 * 103.22612 * 200.27710 * 6 5 2 8 8 C 1.54594 * 102.92205 * 37.41327 * 7 6 5 9 9 H 1.08998 * 110.39159 * 219.08189 * 8 7 6 10 10 N 1.46501 * 110.30924 * 96.95799 * 8 7 6 11 11 C 1.34779 * 120.00269 * 89.27908 * 10 8 7 12 12 O 1.21588 * 119.99328 * 5.58394 * 11 10 8 13 13 N 1.34773 * 120.00369 * 185.57647 * 11 10 8 14 14 C 1.47080 * 120.88392 * 174.55931 * 13 11 10 15 15 C 1.53231 * 108.52232 * 129.09067 * 14 13 11 16 16 N 1.46899 * 109.34397 * 53.83147 * 15 14 13 17 17 C 1.46900 * 111.00159 * 172.75135 * 16 15 14 18 18 C 1.50705 * 109.46513 * 294.29583 * 17 16 15 19 19 H 1.08004 * 120.00293 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99849 * 180.02562 * 18 17 16 21 21 N 1.31515 * 119.99942 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99994 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46963 * 89.99955 * 22 20 18 24 24 H 1.48497 * 109.47106 * 209.99845 * 22 20 18 25 25 H 1.48498 * 109.46985 * 329.99956 * 22 20 18 26 26 C 1.46901 * 111.26680 * 296.89422 * 16 15 14 27 27 C 1.47082 * 120.88093 * 354.83903 * 13 11 10 28 28 C 1.47901 * 110.99736 * 56.53425 * 5 2 1 29 29 H 1.09003 * 109.47081 * 300.00030 * 1 2 3 30 30 H 1.08995 * 109.47453 * 60.00086 * 1 2 3 31 31 H 1.08996 * 109.47337 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47319 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.47116 * 299.99604 * 3 2 1 34 34 H 1.09003 * 109.47141 * 60.00007 * 3 2 1 35 35 H 1.09001 * 109.46623 * 294.08443 * 4 2 1 36 36 H 1.08993 * 109.47065 * 54.08570 * 4 2 1 37 37 H 1.09001 * 109.47004 * 174.08636 * 4 2 1 38 38 H 1.09002 * 110.66607 * 318.71623 * 6 5 2 39 39 H 1.09004 * 110.66944 * 81.84078 * 6 5 2 40 40 H 1.08998 * 110.72366 * 279.04937 * 7 6 5 41 41 H 1.09004 * 110.72005 * 155.77156 * 7 6 5 42 42 H 0.97002 * 120.00031 * 269.28553 * 10 8 7 43 43 H 1.08999 * 109.62387 * 248.79885 * 14 13 11 44 44 H 1.08996 * 109.62478 * 9.37588 * 14 13 11 45 45 H 1.09004 * 109.49010 * 293.86754 * 15 14 13 46 46 H 1.09000 * 109.49249 * 173.79433 * 15 14 13 47 47 H 1.08999 * 109.47307 * 54.29676 * 17 16 15 48 48 H 1.09001 * 109.47061 * 174.30669 * 17 16 15 49 49 H 0.96999 * 119.99782 * 180.02562 * 21 20 18 50 50 H 1.09002 * 109.49380 * 303.14769 * 26 16 15 51 51 H 1.09000 * 109.49740 * 183.06550 * 26 16 15 52 52 H 1.09006 * 109.62696 * 350.62170 * 27 13 11 53 53 H 1.08999 * 109.63150 * 111.20124 * 27 13 11 54 54 H 1.08997 * 109.91663 * 26.49901 * 28 5 2 55 55 H 1.08996 * 110.08459 * 265.28763 * 28 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 7 2.0197 -0.6925 1.1995 6 6 3.4971 -0.8405 1.1628 7 6 3.7626 -1.9954 2.1609 8 6 2.5694 -2.9469 1.9139 9 1 2.2154 -3.3647 2.8563 10 7 2.9571 -4.0210 0.9962 11 6 3.4830 -5.1638 1.4800 12 8 3.5420 -5.3451 2.6808 13 7 3.9432 -6.1055 0.6328 14 6 4.6277 -7.3055 1.1376 15 6 3.9748 -8.5399 0.5068 16 7 3.9718 -8.3953 -0.9551 17 6 3.5118 -9.6296 -1.6053 18 6 4.5060 -10.7329 -1.3489 19 1 5.3907 -10.5368 -0.7613 20 6 4.2860 -11.9926 -1.8644 21 7 3.2089 -12.2313 -2.5803 22 14 5.5179 -13.3603 -1.5460 23 1 5.1499 -14.0773 -0.2987 24 1 5.5064 -14.3120 -2.6858 25 1 6.8764 -12.7787 -1.4002 26 6 3.1602 -7.2452 -1.3751 27 6 3.7797 -5.9576 -0.8214 28 6 1.4785 -2.0668 1.2761 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.7656 -1.7750 -1.1978 36 1 1.5928 -0.2723 -2.1360 37 1 3.1248 -0.6305 -1.3037 38 1 3.8317 -1.1125 0.1617 39 1 3.9840 0.0759 1.4965 40 1 3.7567 -1.6276 3.1869 41 1 4.7057 -2.4924 1.9336 42 1 2.8354 -3.9098 0.0403 43 1 5.6819 -7.2683 0.8631 44 1 4.5303 -7.3536 2.2221 45 1 2.9496 -8.6323 0.8653 46 1 4.5388 -9.4308 0.7830 47 1 2.5409 -9.9139 -1.1997 48 1 3.4227 -9.4633 -2.6788 49 1 3.0540 -13.1176 -2.9427 50 1 2.1463 -7.3556 -0.9903 51 1 3.1333 -7.1970 -2.4637 52 1 3.1216 -5.1146 -1.0320 53 1 4.7524 -5.7909 -1.2842 54 1 1.2459 -2.4306 0.2753 55 1 0.5810 -2.0817 1.8943 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601620548.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:04 Heat of formation + Delta-G solvation = -23.772186 kcal Electronic energy + Delta-G solvation = -30931.061389 eV Core-core repulsion = 27002.505615 eV Total energy + Delta-G solvation = -3928.555774 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.74493 -40.67225 -39.08847 -36.79018 -36.00117 -34.54648 -33.96153 -32.05679 -30.41222 -30.24125 -29.15003 -28.26449 -27.68084 -27.06732 -24.69105 -23.99185 -23.27015 -22.58737 -21.43852 -20.63470 -19.60629 -19.13961 -18.50196 -17.76989 -17.09409 -16.90590 -16.62603 -16.24599 -16.01072 -15.69312 -15.44907 -15.29980 -15.25104 -15.10175 -14.88124 -14.60693 -14.46847 -14.05973 -13.76603 -13.52823 -13.42045 -13.11241 -12.96974 -12.82958 -12.77206 -12.75136 -12.60303 -12.59005 -12.39453 -12.33533 -12.30374 -12.16767 -12.06136 -11.90070 -11.80251 -11.71914 -11.44544 -11.35984 -11.16861 -10.62666 -10.26135 -9.62982 -9.29523 -9.06213 -8.21412 -6.31090 1.42361 1.42796 1.54115 1.55443 2.06457 2.40161 2.76076 3.05840 3.10933 3.21086 3.52110 3.68334 3.92318 3.99568 4.01930 4.04863 4.08345 4.12160 4.23916 4.27117 4.30450 4.40525 4.41948 4.54157 4.60689 4.68080 4.69219 4.74466 4.82582 4.86085 4.91200 4.92443 4.93687 4.99232 5.00540 5.02233 5.03481 5.08562 5.11830 5.16207 5.21688 5.27602 5.33360 5.42289 5.47331 5.53610 5.63253 5.88689 5.95646 6.02483 6.17567 6.24108 6.56661 6.84364 6.89344 7.38663 7.49036 8.89687 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.023638 B = 0.002155 C = 0.002052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.235270 B =12987.125641 C =13642.137060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.089 3.911 3 C -0.133 4.133 4 C -0.184 4.184 5 N -0.507 5.507 6 C 0.036 3.964 7 C -0.129 4.129 8 C 0.150 3.850 9 H 0.077 0.923 10 N -0.726 5.726 11 C 0.707 3.293 12 O -0.631 6.631 13 N -0.628 5.628 14 C 0.145 3.855 15 C 0.056 3.944 16 N -0.537 5.537 17 C 0.209 3.791 18 C -0.523 4.523 19 H 0.066 0.934 20 C 0.001 3.999 21 N -0.934 5.934 22 Si 0.968 3.032 23 H -0.275 1.275 24 H -0.283 1.283 25 H -0.263 1.263 26 C 0.037 3.963 27 C 0.129 3.871 28 C 0.035 3.965 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.068 0.932 34 H 0.058 0.942 35 H 0.056 0.944 36 H 0.070 0.930 37 H 0.062 0.938 38 H 0.059 0.941 39 H 0.089 0.911 40 H 0.080 0.920 41 H 0.065 0.935 42 H 0.404 0.596 43 H 0.081 0.919 44 H 0.085 0.915 45 H 0.007 0.993 46 H 0.080 0.920 47 H -0.043 1.043 48 H 0.011 0.989 49 H 0.264 0.736 50 H 0.016 0.984 51 H 0.090 0.910 52 H 0.105 0.895 53 H 0.088 0.912 54 H 0.066 0.934 55 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.412 28.693 3.275 28.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.001 4.001 3 C -0.190 4.190 4 C -0.242 4.242 5 N -0.232 5.232 6 C -0.092 4.092 7 C -0.168 4.168 8 C 0.045 3.955 9 H 0.095 0.905 10 N -0.384 5.384 11 C 0.408 3.592 12 O -0.513 6.513 13 N -0.365 5.365 14 C 0.022 3.978 15 C -0.073 4.073 16 N -0.262 5.262 17 C 0.083 3.917 18 C -0.561 4.561 19 H 0.084 0.916 20 C -0.197 4.197 21 N -0.575 5.575 22 Si 0.793 3.207 23 H -0.201 1.201 24 H -0.208 1.208 25 H -0.187 1.187 26 C -0.092 4.092 27 C 0.006 3.994 28 C -0.094 4.094 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.107 0.893 40 H 0.098 0.902 41 H 0.084 0.916 42 H 0.242 0.758 43 H 0.099 0.901 44 H 0.104 0.896 45 H 0.026 0.974 46 H 0.099 0.901 47 H -0.025 1.025 48 H 0.030 0.970 49 H 0.073 0.927 50 H 0.035 0.965 51 H 0.108 0.892 52 H 0.123 0.877 53 H 0.107 0.893 54 H 0.084 0.916 55 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.154 28.873 4.328 29.275 hybrid contribution -0.476 -1.954 -0.886 2.197 sum -2.631 26.919 3.442 27.266 Atomic orbital electron populations 1.21885 0.93271 1.02051 1.02503 1.21307 0.95819 0.95061 0.87883 1.21788 1.00997 0.93946 1.02306 1.22526 1.01926 1.00916 0.98828 1.65098 1.05991 1.14567 1.37560 1.23312 0.88700 0.98646 0.98506 1.22864 0.97563 0.95754 1.00631 1.21642 0.94829 0.86100 0.92973 0.90457 1.45302 1.67612 1.14900 1.10610 1.15951 0.78055 0.80593 0.84555 1.90867 1.64769 1.80532 1.15101 1.47415 1.60706 1.21538 1.06839 1.21492 0.95968 0.81586 0.98777 1.22287 0.98141 0.98584 0.88262 1.62010 1.53104 1.04560 1.06484 1.19372 0.92621 0.86603 0.93114 1.21467 1.07394 0.94561 1.32678 0.91598 1.25907 0.97514 1.01404 0.94862 1.70080 1.28329 1.22852 1.36222 0.85391 0.79338 0.78298 0.77657 1.20103 1.20847 1.18689 1.22524 0.94050 0.91500 1.01101 1.21809 1.02348 0.96612 0.78627 1.23117 0.97211 0.88175 1.00867 0.92232 0.91212 0.92842 0.92616 0.91320 0.92322 0.92491 0.91078 0.91871 0.92311 0.89309 0.90172 0.91646 0.75761 0.90124 0.89645 0.97450 0.90127 1.02528 0.97047 0.92718 0.96533 0.89184 0.87695 0.89343 0.91561 0.89213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 8.30 71.98 0.60 -0.86 16 2 C 0.09 0.97 0.69 3.52 0.00 0.97 16 3 C -0.13 -1.29 8.46 71.98 0.61 -0.68 16 4 C -0.18 -1.80 7.66 71.98 0.55 -1.25 16 5 N -0.51 -6.82 5.09 -833.68 -4.24 -11.07 16 6 C 0.04 0.47 5.45 86.65 0.47 0.94 16 7 C -0.13 -2.21 6.78 31.80 0.22 -1.99 16 8 C 0.15 2.86 3.39 45.87 0.16 3.02 16 9 H 0.08 1.87 7.49 -2.39 -0.02 1.85 16 10 N -0.73 -14.94 4.97 -453.61 -2.25 -17.20 16 11 C 0.71 20.70 8.30 179.05 1.49 22.19 16 12 O -0.63 -23.52 15.42 -3.99 -0.06 -23.58 16 13 N -0.63 -18.10 3.01 -835.94 -2.52 -20.62 16 14 C 0.15 4.72 6.61 86.35 0.57 5.29 16 15 C 0.06 2.22 5.46 86.38 0.47 2.69 16 16 N -0.54 -22.23 4.62 -899.82 -4.16 -26.39 16 17 C 0.21 10.89 4.72 85.56 0.40 11.30 16 18 C -0.52 -29.03 8.41 25.60 0.22 -28.81 16 19 H 0.07 3.56 7.13 -2.91 -0.02 3.54 16 20 C 0.00 0.07 5.46 84.66 0.46 0.53 16 21 N -0.93 -55.69 13.29 21.45 0.28 -55.40 16 22 Si 0.97 43.83 29.54 68.60 2.03 45.86 16 23 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 24 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 25 H -0.26 -11.39 7.11 99.48 0.71 -10.69 16 26 C 0.04 1.21 5.62 86.38 0.49 1.69 16 27 C 0.13 3.06 6.54 86.35 0.56 3.62 16 28 C 0.03 0.50 4.90 86.45 0.42 0.93 16 29 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.05 0.59 6.85 -2.39 -0.02 0.57 16 32 H 0.05 0.54 7.11 -2.39 -0.02 0.52 16 33 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.06 0.58 6.00 -2.39 -0.01 0.57 16 36 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.06 0.62 6.30 -2.39 -0.02 0.61 16 38 H 0.06 0.72 5.56 -2.39 -0.01 0.71 16 39 H 0.09 1.08 7.70 -2.39 -0.02 1.06 16 40 H 0.08 1.40 8.14 -2.39 -0.02 1.39 16 41 H 0.06 1.28 8.05 -2.38 -0.02 1.26 16 42 H 0.40 6.31 5.87 -92.71 -0.54 5.77 16 43 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 44 H 0.09 2.87 7.04 -2.39 -0.02 2.85 16 45 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 46 H 0.08 3.40 6.67 -2.39 -0.02 3.38 16 47 H -0.04 -2.49 8.12 -2.39 -0.02 -2.51 16 48 H 0.01 0.63 7.97 -2.39 -0.02 0.61 16 49 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 50 H 0.02 0.57 8.14 -2.39 -0.02 0.55 16 51 H 0.09 2.74 7.99 -2.39 -0.02 2.72 16 52 H 0.11 1.69 5.74 -2.38 -0.01 1.68 16 53 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 54 H 0.07 0.86 4.76 -2.39 -0.01 0.85 16 55 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -68.89 408.22 -2.91 -71.80 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: 0.32 Total: 17.03 kcal Atomic # 6 Polarization: 11.88 SS G_CDS: 7.69 Total: 19.57 kcal Atomic # 7 Polarization: -117.79 SS G_CDS: -12.89 Total: -130.68 kcal Atomic # 8 Polarization: -23.52 SS G_CDS: -0.06 Total: -23.58 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -68.89 -2.91 -71.80 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601620548.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.031 kcal (2) G-P(sol) polarization free energy of solvation -68.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds