Wall clock time and date at job start Tue Mar 31 2020 21:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52997 * 109.47154 * 2 1 4 4 C 1.53000 * 109.46766 * 240.00008 * 2 1 3 5 5 N 1.46898 * 109.46662 * 120.00122 * 2 1 3 6 6 C 1.48537 * 110.99665 * 175.06705 * 5 2 1 7 7 C 1.55100 * 103.28572 * 200.33057 * 6 5 2 8 8 C 1.54598 * 102.84239 * 37.30436 * 7 6 5 9 9 H 1.08997 * 110.30974 * 97.11995 * 8 7 6 10 10 N 1.46502 * 110.30611 * 219.18774 * 8 7 6 11 11 C 1.34777 * 119.99851 * 272.20649 * 10 8 7 12 12 O 1.21592 * 120.00292 * 4.98712 * 11 10 8 13 13 N 1.34777 * 119.99918 * 184.98406 * 11 10 8 14 14 C 1.47081 * 120.88084 * 175.00869 * 13 11 10 15 15 C 1.53239 * 108.52318 * 231.16400 * 14 13 11 16 16 N 1.46899 * 109.34199 * 306.17193 * 15 14 13 17 17 C 1.46899 * 111.00337 * 187.25217 * 16 15 14 18 18 C 1.50695 * 109.47042 * 169.99543 * 17 16 15 19 19 H 1.07998 * 120.00583 * 0.02562 * 18 17 16 20 20 C 1.37885 * 119.99856 * 179.97438 * 18 17 16 21 21 N 1.31518 * 119.99812 * 180.02562 * 20 18 17 22 22 Si 1.86802 * 119.99686 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.46897 * 89.99889 * 22 20 18 24 24 H 1.48503 * 109.46799 * 209.99574 * 22 20 18 25 25 H 1.48495 * 109.47164 * 329.99374 * 22 20 18 26 26 C 1.46899 * 111.26775 * 63.10167 * 16 15 14 27 27 C 1.47073 * 120.88343 * 354.99044 * 13 11 10 28 28 C 1.47899 * 111.00387 * 57.67245 * 5 2 1 29 29 H 1.08999 * 109.46690 * 300.00306 * 1 2 3 30 30 H 1.08999 * 109.46917 * 60.00036 * 1 2 3 31 31 H 1.08996 * 109.47630 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47068 * 180.02562 * 3 2 1 33 33 H 1.08999 * 109.47179 * 299.99804 * 3 2 1 34 34 H 1.09004 * 109.47181 * 60.00045 * 3 2 1 35 35 H 1.09004 * 109.46884 * 297.10755 * 4 2 1 36 36 H 1.08996 * 109.47454 * 57.10609 * 4 2 1 37 37 H 1.09004 * 109.47038 * 177.10965 * 4 2 1 38 38 H 1.09004 * 110.66636 * 318.71272 * 6 5 2 39 39 H 1.09004 * 110.66563 * 81.67619 * 6 5 2 40 40 H 1.08998 * 110.70962 * 278.99812 * 7 6 5 41 41 H 1.08992 * 110.81462 * 155.66009 * 7 6 5 42 42 H 0.97005 * 120.00230 * 92.21387 * 10 8 7 43 43 H 1.08998 * 109.62899 * 111.45306 * 14 13 11 44 44 H 1.09000 * 109.62784 * 350.87619 * 14 13 11 45 45 H 1.09004 * 109.49427 * 186.21087 * 15 14 13 46 46 H 1.09000 * 109.51166 * 66.14230 * 15 14 13 47 47 H 1.09005 * 109.46589 * 49.99960 * 17 16 15 48 48 H 1.08997 * 109.46936 * 289.99985 * 17 16 15 49 49 H 0.97005 * 119.99180 * 180.02562 * 21 20 18 50 50 H 1.09000 * 109.49280 * 56.85776 * 26 16 15 51 51 H 1.09004 * 109.49140 * 176.94205 * 26 16 15 52 52 H 1.09008 * 109.62745 * 248.54371 * 27 13 11 53 53 H 1.08997 * 109.62969 * 8.92671 * 27 13 11 54 54 H 1.08997 * 109.92002 * 26.48418 * 28 5 2 55 55 H 1.09009 * 110.07806 * 265.28350 * 28 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 2.0196 -0.6925 1.1994 6 6 3.4996 -0.8165 1.1756 7 6 3.7762 -1.9757 2.1683 8 6 2.5991 -2.9425 1.9042 9 1 2.9055 -3.7334 1.2196 10 7 2.1216 -3.5182 3.1639 11 6 2.6852 -4.6430 3.6472 12 8 3.6486 -5.1295 3.0871 13 7 2.1811 -5.2285 4.7515 14 6 2.7106 -6.5133 5.2333 15 6 1.5363 -7.4744 5.4470 16 7 0.5442 -6.8423 6.3268 17 6 -0.5138 -7.7924 6.6954 18 6 -1.3700 -7.1942 7.7817 19 1 -1.1505 -6.2068 8.1602 20 6 -2.4343 -7.9071 8.2918 21 7 -3.1818 -7.3848 9.2395 22 14 -2.8144 -9.6147 7.6367 23 1 -2.0753 -10.6265 8.4337 24 1 -4.2734 -9.8715 7.7413 25 1 -2.3970 -9.7035 6.2144 26 6 -0.0232 -5.6359 5.7099 27 6 1.0872 -4.5995 5.5070 28 6 1.5001 -2.0759 1.2620 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 3.1301 1.4425 -0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.7195 -1.7628 -1.2237 36 1 1.6349 -0.2383 -2.1385 37 1 3.1288 -0.6766 -1.2756 38 1 3.8479 -1.0764 0.1760 39 1 3.9685 0.1064 1.5171 40 1 3.7561 -1.6154 3.1968 41 1 4.7283 -2.4573 1.9458 42 1 1.3996 -3.0899 3.6500 43 1 3.2363 -6.3623 6.1761 44 1 3.3936 -6.9288 4.4924 45 1 1.8979 -8.3937 5.9079 46 1 1.0757 -7.7057 4.4865 47 1 -0.0625 -8.7168 7.0561 48 1 -1.1308 -8.0058 5.8225 49 1 -3.9304 -7.8866 9.5985 50 1 -0.4619 -5.8924 4.7456 51 1 -0.7927 -5.2217 6.3615 52 1 1.4569 -4.2645 6.4762 53 1 0.6992 -3.7475 4.9487 54 1 1.2827 -2.4367 0.2567 55 1 0.5972 -2.1093 1.8718 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601620550.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:07 Heat of formation + Delta-G solvation = -19.752393 kcal Electronic energy + Delta-G solvation = -30748.546435 eV Core-core repulsion = 26820.164973 eV Total energy + Delta-G solvation = -3928.381462 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.67950 -40.68257 -39.12372 -36.81575 -35.96560 -34.57734 -34.00927 -32.05326 -30.56009 -30.40308 -29.30631 -28.27915 -27.73564 -26.98466 -24.73467 -23.64272 -23.17789 -22.40436 -21.60269 -20.61024 -19.69357 -19.17758 -18.89827 -17.69359 -17.23571 -16.64336 -16.53540 -16.33673 -16.03107 -15.78831 -15.29568 -15.25843 -15.25203 -15.16136 -14.95217 -14.61948 -14.45436 -14.25609 -14.01234 -13.64048 -13.25540 -13.15547 -12.97436 -12.95263 -12.83432 -12.79385 -12.59397 -12.52559 -12.34853 -12.33174 -12.19087 -12.16946 -11.96671 -11.88045 -11.83700 -11.72687 -11.44537 -11.40831 -11.20567 -10.76885 -10.24412 -9.61249 -9.28958 -9.04486 -8.27185 -6.30000 1.35860 1.36788 1.46601 1.58703 2.08351 2.34754 2.80703 2.98044 3.05299 3.15252 3.52322 3.69207 3.94052 3.97791 4.00796 4.04183 4.12135 4.16007 4.24027 4.27758 4.29460 4.32739 4.40811 4.51059 4.60981 4.66509 4.72004 4.72701 4.77296 4.81364 4.85914 4.87000 4.91769 4.94350 4.96432 5.00914 5.02058 5.04380 5.05956 5.12447 5.14678 5.26278 5.35990 5.41269 5.46782 5.53221 5.58872 5.84314 5.93445 6.02394 6.16586 6.30577 6.60466 6.76238 6.90665 7.33556 7.50693 8.88720 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.017129 B = 0.002266 C = 0.002106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.303170 B =12353.961840 C =13292.663322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.089 3.911 3 C -0.133 4.133 4 C -0.183 4.183 5 N -0.508 5.508 6 C 0.036 3.964 7 C -0.129 4.129 8 C 0.156 3.844 9 H 0.075 0.925 10 N -0.727 5.727 11 C 0.707 3.293 12 O -0.630 6.630 13 N -0.628 5.628 14 C 0.143 3.857 15 C 0.042 3.958 16 N -0.538 5.538 17 C 0.172 3.828 18 C -0.512 4.512 19 H 0.046 0.954 20 C 0.011 3.989 21 N -0.945 5.945 22 Si 0.943 3.057 23 H -0.266 1.266 24 H -0.283 1.283 25 H -0.255 1.255 26 C 0.053 3.947 27 C 0.127 3.873 28 C 0.033 3.967 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.069 0.931 34 H 0.057 0.943 35 H 0.054 0.946 36 H 0.071 0.929 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.090 0.910 40 H 0.071 0.929 41 H 0.068 0.932 42 H 0.406 0.594 43 H 0.076 0.924 44 H 0.091 0.909 45 H 0.092 0.908 46 H 0.023 0.977 47 H 0.030 0.970 48 H -0.016 1.016 49 H 0.266 0.734 50 H 0.023 0.977 51 H 0.078 0.922 52 H 0.078 0.922 53 H 0.104 0.896 54 H 0.067 0.933 55 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.476 15.583 -21.587 28.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.001 4.001 3 C -0.191 4.191 4 C -0.242 4.242 5 N -0.233 5.233 6 C -0.092 4.092 7 C -0.168 4.168 8 C 0.050 3.950 9 H 0.093 0.907 10 N -0.385 5.385 11 C 0.409 3.591 12 O -0.512 6.512 13 N -0.365 5.365 14 C 0.020 3.980 15 C -0.087 4.087 16 N -0.263 5.263 17 C 0.045 3.955 18 C -0.551 4.551 19 H 0.064 0.936 20 C -0.187 4.187 21 N -0.586 5.586 22 Si 0.767 3.233 23 H -0.191 1.191 24 H -0.209 1.209 25 H -0.179 1.179 26 C -0.076 4.076 27 C 0.004 3.996 28 C -0.096 4.096 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.090 0.910 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.108 0.892 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.245 0.755 43 H 0.095 0.905 44 H 0.109 0.891 45 H 0.110 0.890 46 H 0.042 0.958 47 H 0.048 0.952 48 H 0.002 0.998 49 H 0.075 0.925 50 H 0.041 0.959 51 H 0.096 0.904 52 H 0.096 0.904 53 H 0.122 0.878 54 H 0.086 0.914 55 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 12.052 15.663 -21.030 28.859 hybrid contribution -1.096 -1.466 -0.831 2.010 sum 10.957 14.197 -21.861 28.275 Atomic orbital electron populations 1.21881 0.93293 1.02020 1.02506 1.21305 0.95817 0.95062 0.87878 1.21792 1.01056 0.93885 1.02339 1.22519 1.01871 1.00896 0.98871 1.65065 1.06471 1.14073 1.37642 1.23331 0.88647 0.98676 0.98541 1.22888 0.97933 0.95559 1.00428 1.21639 0.94217 0.94875 0.84291 0.90676 1.45318 1.40690 1.26720 1.25778 1.15936 0.82094 0.80886 0.80189 1.90853 1.29999 1.67684 1.62634 1.47408 1.38317 1.23718 1.27036 1.21506 0.94890 0.81688 0.99920 1.22530 0.93540 0.97955 0.94711 1.61798 1.15739 1.07187 1.41578 1.19942 0.89264 0.92317 0.94024 1.21218 1.11313 1.03380 1.19166 0.93599 1.25773 0.95782 1.02161 0.94984 1.70037 1.19485 1.39981 1.29050 0.85786 0.77545 0.80094 0.79913 1.19098 1.20914 1.17900 1.22311 0.96684 0.91706 0.96903 1.21782 0.86095 0.94781 0.96916 1.23107 0.97413 0.88330 1.00722 0.92291 0.91167 0.92896 0.92495 0.91243 0.92386 0.92662 0.90988 0.91859 0.92096 0.89166 0.91060 0.91328 0.75453 0.90540 0.89061 0.88963 0.95843 0.95179 0.99785 0.92467 0.95850 0.90354 0.90353 0.87843 0.91449 0.89501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 8.33 71.98 0.60 -1.01 16 2 C 0.09 1.04 0.69 3.53 0.00 1.05 16 3 C -0.13 -1.38 8.44 71.98 0.61 -0.77 16 4 C -0.18 -1.94 7.75 71.98 0.56 -1.39 16 5 N -0.51 -7.26 5.09 -833.31 -4.24 -11.51 16 6 C 0.04 0.49 5.42 86.71 0.47 0.96 16 7 C -0.13 -2.31 6.79 31.86 0.22 -2.09 16 8 C 0.16 3.01 3.27 45.87 0.15 3.16 16 9 H 0.08 1.72 7.68 -2.39 -0.02 1.70 16 10 N -0.73 -15.88 4.98 -453.61 -2.26 -18.14 16 11 C 0.71 20.48 8.30 179.05 1.49 21.97 16 12 O -0.63 -22.35 15.55 -4.01 -0.06 -22.41 16 13 N -0.63 -17.89 3.01 -835.93 -2.52 -20.41 16 14 C 0.14 4.18 6.58 86.35 0.57 4.75 16 15 C 0.04 1.35 5.62 86.38 0.49 1.83 16 16 N -0.54 -21.12 4.62 -899.82 -4.16 -25.27 16 17 C 0.17 7.95 3.79 85.56 0.32 8.27 16 18 C -0.51 -28.45 8.96 25.60 0.23 -28.22 16 19 H 0.05 2.81 7.37 -2.91 -0.02 2.79 16 20 C 0.01 0.60 5.47 84.66 0.46 1.07 16 21 N -0.94 -57.59 13.96 21.45 0.30 -57.29 16 22 Si 0.94 43.20 27.47 68.60 1.88 45.09 16 23 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 24 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 25 H -0.25 -11.03 6.54 99.48 0.65 -10.38 16 26 C 0.05 1.85 5.46 86.38 0.47 2.32 16 27 C 0.13 3.39 6.60 86.35 0.57 3.96 16 28 C 0.03 0.50 4.91 86.44 0.42 0.92 16 29 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.05 0.64 6.92 -2.39 -0.02 0.63 16 32 H 0.06 0.57 7.07 -2.39 -0.02 0.55 16 33 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 35 H 0.05 0.65 6.01 -2.38 -0.01 0.64 16 36 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.06 0.66 6.13 -2.39 -0.01 0.65 16 38 H 0.06 0.77 5.54 -2.38 -0.01 0.76 16 39 H 0.09 1.15 7.69 -2.39 -0.02 1.13 16 40 H 0.07 1.40 8.06 -2.39 -0.02 1.38 16 41 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.41 7.41 5.82 -92.70 -0.54 6.87 16 43 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 44 H 0.09 2.66 7.10 -2.39 -0.02 2.64 16 45 H 0.09 2.78 7.99 -2.38 -0.02 2.76 16 46 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 47 H 0.03 1.37 7.40 -2.38 -0.02 1.36 16 48 H -0.02 -0.73 7.18 -2.39 -0.02 -0.75 16 49 H 0.27 15.19 8.31 -92.70 -0.77 14.42 16 50 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 51 H 0.08 3.11 6.67 -2.38 -0.02 3.09 16 52 H 0.08 2.12 8.14 -2.38 -0.02 2.11 16 53 H 0.10 2.07 5.63 -2.39 -0.01 2.06 16 54 H 0.07 0.97 5.28 -2.39 -0.01 0.95 16 55 H 0.09 1.32 7.63 -2.38 -0.02 1.30 16 Total: -1.00 -68.21 404.69 -3.15 -71.36 By element: Atomic # 1 Polarization: 21.50 SS G_CDS: 0.28 Total: 21.78 kcal Atomic # 6 Polarization: 9.17 SS G_CDS: 7.63 Total: 16.80 kcal Atomic # 7 Polarization: -119.73 SS G_CDS: -12.88 Total: -132.61 kcal Atomic # 8 Polarization: -22.35 SS G_CDS: -0.06 Total: -22.41 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 1.88 Total: 45.09 kcal Total: -68.21 -3.15 -71.36 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601620550.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.608 kcal (2) G-P(sol) polarization free energy of solvation -68.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds