Wall clock time and date at job start Tue Mar 31 2020 22:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.47949 * 110.99571 * 2 1 4 4 C 1.53921 * 113.33142 * 192.17734 * 3 2 1 5 5 C 1.50543 * 112.93159 * 317.75926 * 4 3 2 6 6 C 1.54515 * 108.85076 * 91.75901 * 5 4 3 7 7 C 1.45868 * 111.68284 * 282.73461 * 6 5 4 8 8 H 1.09004 * 108.85215 * 300.78698 * 7 6 5 9 9 C 1.53007 * 108.84717 * 182.31515 * 7 6 5 10 10 N 1.46507 * 109.46890 * 175.00068 * 9 7 6 11 11 C 1.34778 * 119.99315 * 179.97438 * 10 9 7 12 12 O 1.21587 * 120.00508 * 5.10738 * 11 10 9 13 13 N 1.34780 * 119.99572 * 185.09925 * 11 10 9 14 14 C 1.47077 * 120.88198 * 185.12669 * 13 11 10 15 15 C 1.53232 * 108.68410 * 128.91439 * 14 13 11 16 16 N 1.46902 * 109.34000 * 53.73423 * 15 14 13 17 17 C 1.46902 * 111.00239 * 172.74561 * 16 15 14 18 18 C 1.50701 * 109.46878 * 64.99209 * 17 16 15 19 19 H 1.08003 * 120.00015 * 354.99413 * 18 17 16 20 20 C 1.37879 * 119.99695 * 174.99282 * 18 17 16 21 21 N 1.31512 * 119.99992 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99971 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47133 * 89.99790 * 22 20 18 24 24 H 1.48497 * 109.47177 * 209.99788 * 22 20 18 25 25 H 1.48503 * 109.47145 * 330.00024 * 22 20 18 26 26 C 1.46898 * 111.26846 * 296.89624 * 16 15 14 27 27 C 1.47145 * 120.92420 * 4.88398 * 13 11 10 28 28 C 1.44300 * 111.00275 * 232.58051 * 2 1 3 29 29 H 1.09001 * 109.47667 * 63.95272 * 1 2 3 30 30 H 1.09005 * 109.46768 * 183.95553 * 1 2 3 31 31 H 1.08997 * 109.47497 * 303.94923 * 1 2 3 32 32 H 1.08999 * 108.71166 * 71.18603 * 3 2 1 33 33 H 1.08992 * 108.71597 * 313.17201 * 3 2 1 34 34 H 1.08993 * 108.78967 * 196.86996 * 4 3 2 35 35 H 1.08999 * 108.79241 * 78.64940 * 4 3 2 36 36 H 1.08998 * 109.57162 * 331.94977 * 5 4 3 37 37 H 1.08999 * 109.57020 * 211.57129 * 5 4 3 38 38 H 1.08999 * 109.03587 * 162.17125 * 6 5 4 39 39 H 1.09001 * 108.98198 * 43.27152 * 6 5 4 40 40 H 1.08997 * 109.46709 * 55.00709 * 9 7 6 41 41 H 1.09001 * 109.47023 * 295.00238 * 9 7 6 42 42 H 0.96990 * 120.00124 * 0.02562 * 10 9 7 43 43 H 1.09003 * 109.62759 * 9.11098 * 14 13 11 44 44 H 1.09001 * 109.62907 * 248.72784 * 14 13 11 45 45 H 1.09001 * 109.49501 * 173.68903 * 15 14 13 46 46 H 1.08998 * 109.49525 * 293.77680 * 15 14 13 47 47 H 1.09001 * 109.47148 * 184.99135 * 17 16 15 48 48 H 1.08996 * 109.46929 * 304.99493 * 17 16 15 49 49 H 0.97001 * 119.99471 * 179.97438 * 21 20 18 50 50 H 1.08997 * 109.49161 * 183.06375 * 26 16 15 51 51 H 1.09007 * 109.49115 * 303.14291 * 26 16 15 52 52 H 1.08999 * 109.46393 * 111.37459 * 27 13 11 53 53 H 1.09005 * 109.80768 * 350.98605 * 27 13 11 54 54 H 1.09001 * 109.69428 * 101.63721 * 28 2 1 55 55 H 1.09000 * 109.69399 * 341.05541 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9991 1.3813 0.0000 4 6 3.5073 1.4554 -0.2981 5 6 4.2989 0.3909 0.4136 6 6 4.4180 -0.8432 -0.5086 7 6 3.1843 -1.6211 -0.5298 8 1 2.9575 -1.9496 0.4845 9 6 3.3920 -2.8533 -1.4128 10 7 2.2025 -3.7061 -1.3488 11 6 2.1584 -4.8549 -2.0523 12 8 3.1388 -5.2303 -2.6656 13 7 1.0275 -5.5877 -2.0757 14 6 0.9905 -6.8978 -2.7431 15 6 0.4047 -7.9275 -1.7712 16 7 -0.8919 -7.4462 -1.2758 17 6 -1.5661 -8.4781 -0.4766 18 6 -0.7621 -8.7548 0.7676 19 1 0.1969 -8.2782 0.9080 20 6 -1.2508 -9.6164 1.7267 21 7 -2.4187 -10.1963 1.5559 22 14 -0.2546 -9.9589 3.2693 23 1 -0.6187 -8.9767 4.3219 24 1 -0.5462 -11.3326 3.7520 25 1 1.1930 -9.8395 2.9604 26 6 -0.7411 -6.2019 -0.5098 27 6 -0.2021 -5.1015 -1.4300 28 6 1.9861 -0.8186 -1.0699 29 1 -0.3634 0.4512 -0.9233 30 1 -0.3633 -1.0253 0.0709 31 1 -0.3634 0.5739 0.8524 32 1 1.8135 1.8270 0.9772 33 1 1.4650 1.9608 -0.7529 34 1 3.8782 2.4331 0.0091 35 1 3.6587 1.3465 -1.3720 36 1 3.7881 0.1105 1.3347 37 1 5.2939 0.7702 0.6465 38 1 5.2311 -1.4758 -0.1527 39 1 4.6450 -0.5087 -1.5209 40 1 4.2588 -3.4117 -1.0591 41 1 3.5583 -2.5383 -2.4429 42 1 1.4465 -3.4436 -0.8008 43 1 2.0011 -7.1939 -3.0248 44 1 0.3650 -6.8376 -3.6337 45 1 0.2669 -8.8776 -2.2873 46 1 1.0865 -8.0645 -0.9319 47 1 -2.5601 -8.1291 -0.1968 48 1 -1.6537 -9.3924 -1.0634 49 1 -2.7623 -10.8027 2.2305 50 1 -1.7098 -5.9006 -0.1111 51 1 -0.0432 -6.3630 0.3120 52 1 -0.9443 -4.8661 -2.1929 53 1 0.0165 -4.2087 -0.8441 54 1 2.3111 -0.1836 -1.8941 55 1 1.2116 -1.5030 -1.4161 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601623934.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:50 Heat of formation + Delta-G solvation = -35.572191 kcal Electronic energy + Delta-G solvation = -31049.147595 eV Core-core repulsion = 27120.080134 eV Total energy + Delta-G solvation = -3929.067460 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.53493 -40.34823 -39.10018 -36.64116 -36.00281 -35.27849 -34.31730 -33.18089 -31.89598 -29.91748 -28.72630 -27.74033 -26.95441 -25.67353 -24.59009 -24.23634 -23.57585 -22.06633 -21.38944 -20.58191 -20.38986 -19.24634 -18.33271 -17.43344 -17.18713 -16.85196 -16.74181 -16.47307 -16.00616 -15.88774 -15.58928 -15.50657 -15.28055 -15.05317 -14.73002 -14.48256 -14.44339 -14.21238 -13.88263 -13.73282 -13.70538 -13.45253 -13.32016 -12.98441 -12.93466 -12.69756 -12.54395 -12.46791 -12.25435 -12.20446 -11.99298 -11.93574 -11.81597 -11.65065 -11.61136 -11.51500 -11.38362 -11.30918 -11.11548 -10.61944 -10.23299 -9.56705 -9.11419 -9.03016 -8.17653 -6.36663 1.34099 1.35971 1.45537 1.64485 2.11851 2.35179 2.90081 2.95857 3.07494 3.30821 3.68609 3.84134 3.92524 4.00750 4.11546 4.11785 4.13459 4.19840 4.36797 4.38722 4.48026 4.52382 4.54965 4.58759 4.61349 4.65523 4.69138 4.76784 4.78919 4.84352 4.88439 4.89061 4.94203 5.06082 5.09030 5.12406 5.18919 5.19286 5.21873 5.32130 5.32836 5.34166 5.43323 5.46814 5.56316 5.57636 5.72254 5.91201 6.03144 6.18004 6.21730 6.31868 6.45765 6.83341 6.94144 7.34871 7.52741 8.84535 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.012924 B = 0.002619 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.012265 B =10687.929298 C =11314.169243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.562 5.562 3 C 0.061 3.939 4 C -0.119 4.119 5 C -0.105 4.105 6 C -0.111 4.111 7 C -0.078 4.078 8 H 0.078 0.922 9 C 0.144 3.856 10 N -0.734 5.734 11 C 0.703 3.297 12 O -0.635 6.635 13 N -0.628 5.628 14 C 0.145 3.855 15 C 0.054 3.946 16 N -0.535 5.535 17 C 0.201 3.799 18 C -0.556 4.556 19 H 0.049 0.951 20 C 0.016 3.984 21 N -0.922 5.922 22 Si 0.952 3.048 23 H -0.271 1.271 24 H -0.280 1.280 25 H -0.275 1.275 26 C 0.051 3.949 27 C 0.127 3.873 28 C 0.070 3.930 29 H 0.026 0.974 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.032 0.968 34 H 0.078 0.922 35 H 0.057 0.943 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.053 0.947 41 H 0.060 0.940 42 H 0.405 0.595 43 H 0.082 0.918 44 H 0.083 0.917 45 H 0.077 0.923 46 H 0.012 0.988 47 H 0.015 0.985 48 H 0.006 0.994 49 H 0.266 0.734 50 H 0.082 0.918 51 H 0.018 0.982 52 H 0.089 0.911 53 H 0.100 0.900 54 H 0.046 0.954 55 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.879 26.040 -4.357 27.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.286 5.286 3 C -0.066 4.066 4 C -0.157 4.157 5 C -0.143 4.143 6 C -0.149 4.149 7 C -0.097 4.097 8 H 0.096 0.904 9 C 0.019 3.981 10 N -0.392 5.392 11 C 0.405 3.595 12 O -0.517 6.517 13 N -0.364 5.364 14 C 0.021 3.979 15 C -0.076 4.076 16 N -0.258 5.258 17 C 0.074 3.926 18 C -0.595 4.595 19 H 0.068 0.932 20 C -0.184 4.184 21 N -0.562 5.562 22 Si 0.778 3.222 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.200 1.200 26 C -0.078 4.078 27 C 0.004 3.996 28 C -0.059 4.059 29 H 0.045 0.955 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.050 0.950 34 H 0.097 0.903 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.072 0.928 41 H 0.078 0.922 42 H 0.244 0.756 43 H 0.100 0.900 44 H 0.102 0.898 45 H 0.095 0.905 46 H 0.031 0.969 47 H 0.033 0.967 48 H 0.024 0.976 49 H 0.075 0.925 50 H 0.100 0.900 51 H 0.037 0.963 52 H 0.108 0.892 53 H 0.118 0.882 54 H 0.064 0.936 55 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 9.302 25.593 -4.737 27.640 hybrid contribution 0.057 -0.636 1.204 1.363 sum 9.359 24.957 -3.533 26.887 Atomic orbital electron populations 1.22436 0.86206 1.02736 1.00700 1.60642 1.07983 1.13143 1.46859 1.22436 0.95239 0.87753 1.01160 1.21402 0.93600 1.00044 1.00640 1.21214 0.99954 0.94487 0.98654 1.20525 0.96470 0.97353 1.00575 1.20226 0.96499 0.93435 0.99582 0.90407 1.21374 0.86406 0.90076 1.00220 1.45245 1.21398 1.22116 1.50479 1.16002 0.82619 0.80892 0.80028 1.90850 1.36258 1.73121 1.51508 1.47404 1.10056 1.20466 1.58500 1.21499 1.01395 0.80446 0.94529 1.22256 0.90431 0.97902 0.96969 1.62421 1.19803 1.05234 1.38381 1.19435 0.93593 0.89459 0.90105 1.21932 1.04900 1.27019 1.05670 0.93244 1.25728 0.95854 0.95518 1.01279 1.70041 1.19424 1.30484 1.36238 0.85650 0.78881 0.77757 0.79959 1.19604 1.20560 1.20008 1.22278 1.00593 0.90481 0.94485 1.21861 0.85589 0.95861 0.96247 1.21805 0.96563 0.95656 0.91888 0.95539 0.90943 0.90981 0.90840 0.94960 0.90302 0.92385 0.91723 0.91147 0.91768 0.91732 0.92846 0.92172 0.75582 0.89996 0.89841 0.90502 0.96940 0.96652 0.97632 0.92531 0.90014 0.96330 0.89241 0.88211 0.93596 0.91304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.29 127.69 1.19 1.52 16 2 N -0.56 -7.78 4.25 -922.46 -3.92 -11.71 16 3 C 0.06 0.72 5.44 86.41 0.47 1.19 16 4 C -0.12 -1.22 5.28 30.11 0.16 -1.07 16 5 C -0.11 -1.22 5.63 30.31 0.17 -1.05 16 6 C -0.11 -1.47 4.52 28.92 0.13 -1.34 16 7 C -0.08 -1.19 1.89 -12.64 -0.02 -1.21 16 8 H 0.08 1.37 8.08 -2.38 -0.02 1.35 16 9 C 0.14 2.93 4.99 86.38 0.43 3.36 16 10 N -0.73 -17.13 4.91 -478.51 -2.35 -19.48 16 11 C 0.70 22.19 8.31 179.05 1.49 23.68 16 12 O -0.64 -24.80 15.83 -3.99 -0.06 -24.87 16 13 N -0.63 -19.12 3.02 -835.77 -2.52 -21.64 16 14 C 0.14 4.71 6.57 86.35 0.57 5.28 16 15 C 0.05 2.09 5.25 86.38 0.45 2.54 16 16 N -0.53 -21.88 4.83 -899.82 -4.35 -26.23 16 17 C 0.20 10.22 5.11 85.56 0.44 10.66 16 18 C -0.56 -30.40 7.75 25.60 0.20 -30.20 16 19 H 0.05 2.73 5.88 -2.91 -0.02 2.71 16 20 C 0.02 0.90 5.46 84.66 0.46 1.36 16 21 N -0.92 -53.97 13.29 21.45 0.28 -53.68 16 22 Si 0.95 43.87 29.54 68.60 2.03 45.89 16 23 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 24 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 25 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 26 C 0.05 1.79 5.15 86.38 0.45 2.24 16 27 C 0.13 3.29 6.59 86.34 0.57 3.86 16 28 C 0.07 0.99 4.68 87.12 0.41 1.40 16 29 H 0.03 0.31 8.14 -2.39 -0.02 0.29 16 30 H 0.07 0.87 7.99 -2.38 -0.02 0.85 16 31 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.03 0.37 8.02 -2.39 -0.02 0.35 16 34 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.06 0.62 6.66 -2.39 -0.02 0.61 16 36 H 0.06 0.90 7.78 -2.39 -0.02 0.89 16 37 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.06 0.87 8.08 -2.39 -0.02 0.85 16 39 H 0.06 0.81 7.58 -2.39 -0.02 0.79 16 40 H 0.05 1.25 8.08 -2.39 -0.02 1.23 16 41 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.41 7.82 5.11 -92.72 -0.47 7.35 16 43 H 0.08 2.77 7.10 -2.39 -0.02 2.76 16 44 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 45 H 0.08 2.95 8.05 -2.39 -0.02 2.93 16 46 H 0.01 0.55 6.92 -2.39 -0.02 0.53 16 47 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 48 H 0.01 0.31 8.06 -2.39 -0.02 0.29 16 49 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 50 H 0.08 2.81 8.11 -2.39 -0.02 2.79 16 51 H 0.02 0.75 6.79 -2.38 -0.02 0.73 16 52 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 53 H 0.10 1.93 5.65 -2.38 -0.01 1.91 16 54 H 0.05 0.66 6.79 -2.39 -0.02 0.64 16 55 H 0.07 1.00 6.04 -2.39 -0.01 0.99 16 Total: -1.00 -67.49 407.26 -2.96 -70.45 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: 0.38 Total: 19.06 kcal Atomic # 6 Polarization: 14.65 SS G_CDS: 7.55 Total: 22.20 kcal Atomic # 7 Polarization: -119.88 SS G_CDS: -12.86 Total: -132.73 kcal Atomic # 8 Polarization: -24.80 SS G_CDS: -0.06 Total: -24.87 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.89 kcal Total: -67.49 -2.96 -70.45 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601623934.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.876 kcal (2) G-P(sol) polarization free energy of solvation -67.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds