Wall clock time and date at job start Tue Mar 31 2020 21:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47387 * 2 1 4 4 N 1.46903 * 109.47321 * 185.77592 * 3 2 1 5 5 C 1.47897 * 110.99855 * 74.32775 * 4 3 2 6 6 C 1.53996 * 107.05751 * 214.15689 * 5 4 3 7 7 C 1.54593 * 105.14043 * 1.22356 * 6 5 4 8 8 C 1.48527 * 111.00013 * 316.93300 * 4 3 2 9 9 H 1.09008 * 110.66667 * 41.28351 * 8 4 3 10 10 C 1.53000 * 110.66814 * 278.15620 * 8 4 3 11 11 N 1.46505 * 109.47271 * 61.67586 * 10 8 4 12 12 C 1.34777 * 119.99946 * 186.50477 * 11 10 8 13 13 O 1.21580 * 119.99995 * 5.16178 * 12 11 10 14 14 N 1.34777 * 119.99556 * 185.15986 * 12 11 10 15 15 C 1.47083 * 120.88342 * 5.01899 * 14 12 11 16 16 C 1.53692 * 108.27543 * 128.75420 * 15 14 12 17 17 N 1.46906 * 109.25734 * 54.08329 * 16 15 14 18 18 C 1.46900 * 110.99711 * 172.60497 * 17 16 15 19 19 C 1.50696 * 109.47285 * 294.30008 * 18 17 16 20 20 H 1.08003 * 120.00327 * 359.97438 * 19 18 17 21 21 C 1.37878 * 120.00211 * 180.02562 * 19 18 17 22 22 N 1.31523 * 119.99639 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 120.00233 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.46934 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.46859 * 119.99831 * 23 21 19 26 26 H 1.48498 * 109.46659 * 239.99668 * 23 21 19 27 27 C 1.46893 * 111.26643 * 296.75426 * 17 16 15 28 28 C 1.47080 * 120.87735 * 185.29430 * 14 12 11 29 29 H 1.08999 * 109.47392 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47050 * 299.99948 * 1 2 3 31 31 H 1.09000 * 109.47015 * 59.99510 * 1 2 3 32 32 H 1.09005 * 109.47050 * 240.00052 * 2 1 3 33 33 H 1.09001 * 109.47536 * 120.00480 * 2 1 3 34 34 H 1.09000 * 109.47506 * 65.77494 * 3 2 1 35 35 H 1.09003 * 109.47390 * 305.77623 * 3 2 1 36 36 H 1.08998 * 109.92392 * 333.51262 * 5 4 3 37 37 H 1.09010 * 109.91720 * 94.60756 * 5 4 3 38 38 H 1.09002 * 110.30844 * 120.14402 * 6 5 4 39 39 H 1.09008 * 110.30829 * 242.31198 * 6 5 4 40 40 H 1.09001 * 110.72040 * 140.31063 * 7 6 5 41 41 H 1.08992 * 110.72652 * 263.42209 * 7 6 5 42 42 H 1.09000 * 109.47066 * 181.67612 * 10 8 4 43 43 H 1.09004 * 109.47014 * 301.67557 * 10 8 4 44 44 H 0.97001 * 119.99592 * 6.50598 * 11 10 8 45 45 H 1.09007 * 109.62554 * 248.52375 * 15 14 12 46 46 H 1.09004 * 109.62910 * 9.10147 * 15 14 12 47 47 H 1.09004 * 109.65027 * 294.07864 * 16 15 14 48 48 H 1.09003 * 109.44119 * 173.95954 * 16 15 14 49 49 H 1.09000 * 109.47007 * 54.30173 * 18 17 16 50 50 H 1.09000 * 109.46476 * 174.29976 * 18 17 16 51 51 H 0.96997 * 119.99777 * 180.02562 * 22 21 19 52 52 H 1.09007 * 109.49272 * 303.14347 * 27 17 16 53 53 H 1.08997 * 109.51681 * 183.07883 * 27 17 16 54 54 H 1.08994 * 109.63048 * 350.89652 * 28 14 12 55 55 H 1.09005 * 109.62635 * 111.47794 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5024 1.4448 -0.1394 5 6 3.9033 1.1174 -1.5249 6 6 5.2179 0.3201 -1.4383 7 6 5.5138 0.1923 0.0736 8 6 4.1205 0.4014 0.7182 9 1 3.5384 -0.5196 0.6835 10 6 4.2609 0.8993 2.1581 11 7 2.9336 1.1906 2.7057 12 6 2.8167 1.7678 3.9180 13 8 3.8104 2.1322 4.5162 14 7 1.5981 1.9410 4.4671 15 6 0.3926 1.4104 3.8123 16 6 -0.3980 0.5939 4.8468 17 7 -0.6503 1.4263 6.0307 18 6 -1.5516 0.7458 6.9702 19 6 -2.9103 0.5878 6.3378 20 1 -3.0868 0.9563 5.3381 21 6 -3.9284 -0.0264 7.0359 22 7 -3.7136 -0.4748 8.2535 23 14 -5.6124 -0.2229 6.2517 24 1 -5.5938 0.3606 4.8864 25 1 -5.9547 -1.6656 6.1693 26 1 -6.6275 0.4804 7.0764 27 6 0.6052 1.8098 6.6897 28 6 1.4377 2.6709 5.7339 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.7636 1.9256 0.9371 35 1 1.5947 1.9853 -0.8338 36 1 3.1324 0.5118 -2.0013 37 1 4.0585 2.0347 -2.0931 38 1 5.0920 -0.6666 -1.8840 39 1 6.0222 0.8614 -1.9368 40 1 5.9024 -0.7987 0.3081 41 1 6.2113 0.9650 0.3969 42 1 4.7428 0.1311 2.7628 43 1 4.8665 1.8055 2.1717 44 1 2.1391 0.9681 2.1957 45 1 -0.2191 2.2355 3.4474 46 1 0.6807 0.7684 2.9798 47 1 0.1769 -0.2858 5.1365 48 1 -1.3478 0.2810 4.4131 49 1 -1.1478 -0.2368 7.2140 50 1 -1.6413 1.3380 7.8810 51 1 -4.4297 -0.9072 8.7444 52 1 1.1661 0.9132 6.9537 53 1 0.3835 2.3791 7.5925 54 1 2.4170 2.8626 6.1724 55 1 0.9245 3.6148 5.5502 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602312571.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:58:40 Heat of formation + Delta-G solvation = -25.313635 kcal Electronic energy + Delta-G solvation = -31486.868591 eV Core-core repulsion = 27558.245974 eV Total energy + Delta-G solvation = -3928.622616 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.70005 -40.53375 -39.05366 -36.02582 -35.80253 -35.35246 -34.36503 -32.23896 -31.65212 -30.97322 -29.80084 -27.36942 -26.60299 -25.48437 -24.70743 -23.80647 -23.35740 -22.34966 -21.77021 -20.95208 -20.18842 -19.01070 -18.48695 -17.68306 -17.33510 -16.80585 -16.66057 -16.46147 -16.01199 -15.75955 -15.65407 -15.52956 -15.31629 -15.29411 -14.93088 -14.61567 -14.39941 -14.14367 -14.04327 -13.66008 -13.50504 -13.31571 -13.05781 -12.77460 -12.65889 -12.62486 -12.47875 -12.46925 -12.35116 -12.33944 -12.21475 -12.19160 -12.11975 -11.95063 -11.78130 -11.67944 -11.26576 -11.26435 -11.21219 -10.62092 -10.22599 -9.60285 -9.28397 -9.06064 -8.19617 -6.29902 1.43200 1.44545 1.57337 1.58992 2.07200 2.41471 2.82748 2.95687 3.12656 3.20937 3.65716 3.68314 3.86474 3.90431 3.98875 4.03025 4.09466 4.11724 4.18766 4.21864 4.25478 4.33345 4.39356 4.47628 4.53045 4.59880 4.65729 4.69821 4.72385 4.77216 4.82313 4.90095 4.91347 4.95504 4.99526 5.02538 5.06043 5.12798 5.15894 5.17724 5.21331 5.23656 5.34670 5.39540 5.41254 5.49737 5.64511 5.88390 5.94934 6.03015 6.07160 6.26623 6.54751 6.85734 6.87519 7.40155 7.48105 8.92063 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.014745 B = 0.002799 C = 0.002445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.477266 B =10000.219439 C =11448.556180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.161 4.161 3 C 0.035 3.965 4 N -0.523 5.523 5 C 0.032 3.968 6 C -0.125 4.125 7 C -0.114 4.114 8 C 0.046 3.954 9 H 0.078 0.922 10 C 0.153 3.847 11 N -0.737 5.737 12 C 0.702 3.298 13 O -0.632 6.632 14 N -0.629 5.629 15 C 0.127 3.873 16 C 0.053 3.947 17 N -0.536 5.536 18 C 0.208 3.792 19 C -0.518 4.518 20 H 0.071 0.929 21 C 0.000 4.000 22 N -0.937 5.937 23 Si 0.970 3.030 24 H -0.257 1.257 25 H -0.281 1.281 26 H -0.282 1.282 27 C 0.043 3.957 28 C 0.145 3.855 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.060 0.940 34 H 0.067 0.933 35 H 0.086 0.914 36 H 0.055 0.945 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.087 0.913 41 H 0.073 0.927 42 H 0.064 0.936 43 H 0.060 0.940 44 H 0.405 0.595 45 H 0.088 0.912 46 H 0.093 0.907 47 H 0.011 0.989 48 H 0.089 0.911 49 H -0.042 1.042 50 H 0.006 0.994 51 H 0.263 0.737 52 H 0.013 0.987 53 H 0.084 0.916 54 H 0.089 0.911 55 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.921 0.614 -23.201 27.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.200 4.200 3 C -0.093 4.093 4 N -0.246 5.246 5 C -0.096 4.096 6 C -0.163 4.163 7 C -0.152 4.152 8 C -0.063 4.063 9 H 0.096 0.904 10 C 0.028 3.972 11 N -0.398 5.398 12 C 0.404 3.596 13 O -0.514 6.514 14 N -0.366 5.366 15 C 0.004 3.996 16 C -0.076 4.076 17 N -0.260 5.260 18 C 0.082 3.918 19 C -0.557 4.557 20 H 0.089 0.911 21 C -0.198 4.198 22 N -0.578 5.578 23 Si 0.795 3.205 24 H -0.180 1.180 25 H -0.207 1.207 26 H -0.208 1.208 27 C -0.086 4.086 28 C 0.021 3.979 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.104 0.896 36 H 0.073 0.927 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.099 0.901 40 H 0.106 0.894 41 H 0.092 0.908 42 H 0.082 0.918 43 H 0.079 0.921 44 H 0.246 0.754 45 H 0.107 0.893 46 H 0.111 0.889 47 H 0.030 0.970 48 H 0.107 0.893 49 H -0.024 1.024 50 H 0.024 0.976 51 H 0.072 0.928 52 H 0.031 0.969 53 H 0.102 0.898 54 H 0.107 0.893 55 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 15.512 1.739 -22.667 27.521 hybrid contribution -1.283 -1.894 0.425 2.327 sum 14.228 -0.156 -22.241 26.404 Atomic orbital electron populations 1.21766 0.94494 1.02420 1.02586 1.22237 0.97435 0.97904 1.02405 1.22556 0.87741 0.96200 1.02848 1.64893 1.08517 1.45104 1.06106 1.22927 0.97043 0.99951 0.89658 1.22376 0.97210 1.00767 0.95962 1.22461 0.94644 1.03040 0.95103 1.23186 0.97486 0.94253 0.91349 0.90393 1.21222 0.83060 1.00315 0.92576 1.45572 1.10624 1.66019 1.17538 1.16027 0.83027 0.78682 0.81907 1.90844 1.37191 1.58873 1.64483 1.47409 1.05196 1.58978 1.25037 1.21929 0.85158 0.98234 0.94285 1.22405 0.99784 0.93286 0.92087 1.62009 1.12135 1.43572 1.08332 1.19391 0.91401 0.89998 0.91055 1.21478 0.95395 1.36905 1.01878 0.91081 1.25951 1.03379 0.95171 0.95327 1.70110 1.34426 1.40682 1.12558 0.85314 0.78522 0.77647 0.79025 1.18027 1.20696 1.20806 1.22459 0.90340 0.98159 0.97641 1.21506 0.99918 0.94180 0.82247 0.92281 0.92556 0.91722 0.90693 0.92129 0.91488 0.89606 0.92681 0.90266 0.90277 0.90117 0.89392 0.90805 0.91820 0.92112 0.75351 0.89349 0.88852 0.97035 0.89282 1.02439 0.97617 0.92779 0.96916 0.89773 0.89274 0.89899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.91 71.98 0.71 -1.29 16 2 C -0.16 -2.03 4.32 30.59 0.13 -1.90 16 3 C 0.04 0.51 4.68 86.30 0.40 0.92 16 4 N -0.52 -8.08 5.23 -858.25 -4.49 -12.56 16 5 C 0.03 0.36 6.41 86.45 0.55 0.92 16 6 C -0.13 -1.15 6.93 31.47 0.22 -0.93 16 7 C -0.11 -1.31 6.50 31.80 0.21 -1.10 16 8 C 0.05 0.69 2.30 45.26 0.10 0.79 16 9 H 0.08 1.09 5.32 -2.38 -0.01 1.08 16 10 C 0.15 3.26 5.46 86.38 0.47 3.73 16 11 N -0.74 -17.90 4.66 -478.52 -2.23 -20.13 16 12 C 0.70 22.46 8.31 179.05 1.49 23.95 16 13 O -0.63 -24.66 15.75 -3.97 -0.06 -24.72 16 14 N -0.63 -19.42 3.00 -835.04 -2.51 -21.92 16 15 C 0.13 3.48 6.52 86.50 0.56 4.05 16 16 C 0.05 1.94 5.47 86.53 0.47 2.41 16 17 N -0.54 -22.54 4.62 -898.88 -4.15 -26.69 16 18 C 0.21 10.90 4.72 85.56 0.40 11.31 16 19 C -0.52 -28.22 8.41 25.60 0.22 -28.01 16 20 H 0.07 3.70 7.13 -2.91 -0.02 3.68 16 21 C 0.00 -0.03 5.46 84.65 0.46 0.44 16 22 N -0.94 -55.83 13.29 21.45 0.28 -55.54 16 23 Si 0.97 42.82 29.54 68.60 2.03 44.85 16 24 H -0.26 -10.60 7.11 99.48 0.71 -9.90 16 25 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 26 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 27 C 0.04 1.61 5.62 86.38 0.49 2.09 16 28 C 0.14 4.64 6.61 86.35 0.57 5.21 16 29 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.06 0.79 7.95 -2.38 -0.02 0.77 16 31 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.07 0.84 6.72 -2.38 -0.02 0.82 16 33 H 0.06 0.86 5.42 -2.39 -0.01 0.84 16 34 H 0.07 1.19 5.83 -2.39 -0.01 1.17 16 35 H 0.09 1.14 8.02 -2.39 -0.02 1.12 16 36 H 0.05 0.55 6.45 -2.39 -0.02 0.53 16 37 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 38 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 39 H 0.08 0.65 8.14 -2.38 -0.02 0.63 16 40 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.07 0.95 8.05 -2.39 -0.02 0.94 16 42 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.06 1.52 8.06 -2.38 -0.02 1.50 16 44 H 0.40 8.30 1.83 -92.71 -0.17 8.13 16 45 H 0.09 2.27 8.14 -2.38 -0.02 2.25 16 46 H 0.09 2.03 5.65 -2.38 -0.01 2.02 16 47 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 48 H 0.09 3.35 6.67 -2.39 -0.02 3.33 16 49 H -0.04 -2.44 8.12 -2.39 -0.02 -2.46 16 50 H 0.01 0.33 7.97 -2.39 -0.02 0.31 16 51 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 52 H 0.01 0.50 8.14 -2.38 -0.02 0.48 16 53 H 0.08 3.04 7.99 -2.39 -0.02 3.03 16 54 H 0.09 2.90 7.04 -2.39 -0.02 2.88 16 55 H 0.08 2.46 8.14 -2.38 -0.02 2.44 16 Total: -1.00 -69.22 407.13 -2.96 -72.18 By element: Atomic # 1 Polarization: 21.28 SS G_CDS: 0.70 Total: 21.98 kcal Atomic # 6 Polarization: 15.11 SS G_CDS: 7.47 Total: 22.57 kcal Atomic # 7 Polarization: -123.77 SS G_CDS: -13.09 Total: -136.86 kcal Atomic # 8 Polarization: -24.66 SS G_CDS: -0.06 Total: -24.72 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Total: -69.22 -2.96 -72.18 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602312571.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.867 kcal (2) G-P(sol) polarization free energy of solvation -69.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds