Wall clock time and date at job start Tue Mar 31 2020 21:59:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.47327 * 2 1 4 4 N 1.46898 * 109.47172 * 120.00309 * 2 1 3 5 5 C 1.47901 * 111.00219 * 64.78091 * 4 2 1 6 6 C 1.53993 * 107.05763 * 145.84511 * 5 4 2 7 7 C 1.54590 * 105.22736 * 358.72365 * 6 5 4 8 8 H 1.09010 * 110.72642 * 96.45366 * 7 6 5 9 9 C 1.53001 * 110.72773 * 219.73212 * 7 6 5 10 10 N 1.46497 * 109.47256 * 293.55006 * 9 7 6 11 11 C 1.34776 * 119.99816 * 179.97438 * 10 9 7 12 12 O 1.21584 * 120.00251 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99968 * 179.97438 * 11 10 9 14 14 C 1.46502 * 120.00585 * 180.02562 * 13 11 10 15 15 C 1.53041 * 109.45849 * 275.03015 * 14 13 11 16 16 C 1.53187 * 109.31244 * 178.59621 * 15 14 13 17 17 N 1.46925 * 108.76509 * 54.65357 * 16 15 14 18 18 C 1.36936 * 120.63256 * 126.36280 * 17 16 15 19 19 H 1.07996 * 120.00385 * 215.48078 * 18 17 16 20 20 C 1.38820 * 119.99948 * 35.47327 * 18 17 16 21 21 N 1.31613 * 119.99841 * 15.41024 * 20 18 17 22 22 Si 1.86796 * 119.99818 * 195.40419 * 20 18 17 23 23 H 1.48499 * 109.47381 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47224 * 120.00515 * 22 20 18 25 25 H 1.48502 * 109.47212 * 240.00006 * 22 20 18 26 26 C 1.46924 * 118.73911 * 306.38194 * 17 16 15 27 27 C 1.53031 * 109.46517 * 154.97129 * 14 13 11 28 28 C 1.48541 * 110.99786 * 182.17712 * 4 2 1 29 29 H 1.09002 * 109.46571 * 301.54915 * 1 2 3 30 30 H 1.08997 * 109.47089 * 61.54915 * 1 2 3 31 31 H 1.08998 * 109.47194 * 181.55408 * 1 2 3 32 32 H 1.08997 * 109.46653 * 240.00121 * 2 1 3 33 33 H 1.08996 * 109.47138 * 59.99878 * 3 2 1 34 34 H 1.08998 * 109.47022 * 180.02562 * 3 2 1 35 35 H 1.09003 * 109.46642 * 299.99955 * 3 2 1 36 36 H 1.09000 * 109.91557 * 26.49224 * 5 4 2 37 37 H 1.09002 * 109.91519 * 265.19608 * 5 4 2 38 38 H 1.09003 * 110.30833 * 117.69139 * 6 5 4 39 39 H 1.08996 * 110.31005 * 239.75887 * 6 5 4 40 40 H 1.09005 * 109.46710 * 53.54950 * 9 7 6 41 41 H 1.08994 * 109.47579 * 173.54269 * 9 7 6 42 42 H 0.96996 * 120.00135 * 359.97438 * 10 9 7 43 43 H 0.97008 * 119.99777 * 0.02562 * 13 11 10 44 44 H 1.09007 * 109.45394 * 34.99419 * 14 13 11 45 45 H 1.09004 * 109.49272 * 298.56217 * 15 14 13 46 46 H 1.08997 * 109.49832 * 58.65409 * 15 14 13 47 47 H 1.08998 * 109.59906 * 294.86459 * 16 15 14 48 48 H 1.08999 * 109.58488 * 174.43403 * 16 15 14 49 49 H 0.97001 * 120.00275 * 179.97438 * 21 20 18 50 50 H 1.09001 * 109.58924 * 293.82359 * 26 17 16 51 51 H 1.09006 * 109.58656 * 173.39311 * 26 17 16 52 52 H 1.09004 * 109.49908 * 301.34030 * 27 14 13 53 53 H 1.09001 * 109.49790 * 61.43593 * 27 14 13 54 54 H 1.08997 * 110.66962 * 318.71036 * 28 4 2 55 55 H 1.09005 * 110.66465 * 81.67764 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 1.6417 -2.1223 1.1774 6 6 2.7858 -2.9024 1.8511 7 6 3.8410 -1.8355 2.2227 8 1 3.7264 -1.5248 3.2613 9 6 5.2551 -2.3600 1.9660 10 7 5.5420 -3.4621 2.8876 11 6 6.7372 -4.0834 2.8438 12 8 7.5776 -3.7289 2.0398 13 7 7.0013 -5.0969 3.6920 14 6 8.3007 -5.7720 3.6449 15 6 8.2676 -6.8676 2.5770 16 6 9.6384 -7.5478 2.5063 17 7 9.9993 -8.0243 3.8484 18 6 10.3512 -9.3317 4.0534 19 1 10.0720 -9.8287 4.9706 20 6 11.0668 -10.0184 3.0820 21 7 11.6665 -9.3564 2.1154 22 14 11.1787 -11.8819 3.1470 23 1 10.4228 -12.3825 4.3231 24 1 10.5995 -12.4561 1.9060 25 1 12.6022 -12.2886 3.2631 26 6 9.9752 -7.0715 4.9665 27 6 8.6007 -6.3965 5.0094 28 6 3.5036 -0.6669 1.2603 29 1 -0.3632 0.5377 0.8758 30 1 -0.3633 0.4896 -0.9035 31 1 -0.3633 -1.0273 0.0279 32 1 1.8933 -0.5138 -0.8900 33 1 1.6768 1.9563 0.8899 34 1 3.1301 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.5193 -2.4581 0.1477 37 1 0.7149 -2.2699 1.7317 38 1 2.4240 -3.4051 2.7480 39 1 3.2095 -3.6276 1.1565 40 1 5.3294 -2.7168 0.9387 41 1 5.9750 -1.5571 2.1245 42 1 4.8717 -3.7447 3.5293 43 1 6.3310 -5.3795 4.3338 44 1 9.0773 -5.0479 3.3983 45 1 7.5081 -7.6053 2.8361 46 1 8.0307 -6.4255 1.6093 47 1 10.3841 -6.8323 2.1597 48 1 9.5921 -8.3924 1.8188 49 1 12.1669 -9.8361 1.4369 50 1 10.7483 -6.3172 4.8207 51 1 10.1511 -7.6019 5.9025 52 1 8.6009 -5.6189 5.7733 53 1 7.8380 -7.1387 5.2454 54 1 3.9323 -0.8463 0.2743 55 1 3.8557 0.2822 1.6646 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609339137.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:59:17 Heat of formation + Delta-G solvation = -40.936713 kcal Electronic energy + Delta-G solvation = -29724.737310 eV Core-core repulsion = 25795.437226 eV Total energy + Delta-G solvation = -3929.300084 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.26347 -40.33353 -39.06882 -36.76592 -35.89896 -34.72633 -33.81388 -31.81771 -31.48029 -30.56542 -30.16058 -27.96480 -26.98887 -25.71897 -23.89473 -23.61417 -23.14094 -21.80635 -21.31352 -21.04236 -20.75995 -19.27191 -18.62206 -17.57092 -17.41400 -16.85230 -16.64948 -16.21883 -15.92912 -15.56113 -15.36703 -15.31843 -15.12514 -14.99671 -14.74792 -14.52835 -14.23724 -14.02167 -13.96089 -13.70450 -13.28550 -13.15897 -13.04340 -12.97533 -12.96084 -12.68697 -12.59406 -12.24323 -12.13539 -12.11248 -12.01676 -11.98928 -11.86950 -11.76908 -11.70512 -11.53611 -11.49547 -11.40972 -11.16437 -10.59531 -10.29853 -9.71010 -9.39627 -8.61357 -7.87927 -5.42303 1.46413 1.48068 1.59226 1.71341 2.20477 2.50791 2.94061 3.25233 3.31335 3.62634 3.67524 3.72852 3.83316 3.90898 4.08147 4.10463 4.12332 4.27900 4.36295 4.37353 4.41790 4.46638 4.49210 4.65407 4.66873 4.68493 4.76949 4.81228 4.82190 4.88040 4.91615 4.94424 4.97079 5.01643 5.03126 5.07940 5.10792 5.14802 5.15769 5.25246 5.33255 5.34328 5.38663 5.41147 5.52373 5.62957 5.64489 5.67464 5.92710 6.07690 6.12669 6.42478 7.14382 7.17935 7.65301 7.82686 8.40457 9.18463 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.027371 B = 0.001712 C = 0.001686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.734781 B =16354.002901 C =16603.959729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.062 3.938 3 C -0.144 4.144 4 N -0.518 5.518 5 C 0.037 3.963 6 C -0.126 4.126 7 C -0.089 4.089 8 H 0.102 0.898 9 C 0.152 3.848 10 N -0.728 5.728 11 C 0.697 3.303 12 O -0.641 6.641 13 N -0.725 5.725 14 C 0.181 3.819 15 C -0.129 4.129 16 C 0.188 3.812 17 N -0.607 5.607 18 C -0.267 4.267 19 H 0.070 0.930 20 C -0.047 4.047 21 N -0.936 5.936 22 Si 0.968 3.032 23 H -0.260 1.260 24 H -0.292 1.292 25 H -0.292 1.292 26 C 0.141 3.859 27 C -0.120 4.120 28 C 0.044 3.956 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.053 0.947 32 H 0.034 0.966 33 H 0.062 0.938 34 H 0.053 0.947 35 H 0.068 0.932 36 H 0.040 0.960 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.062 0.938 40 H 0.048 0.952 41 H 0.058 0.942 42 H 0.412 0.588 43 H 0.411 0.589 44 H 0.053 0.947 45 H 0.063 0.937 46 H 0.042 0.958 47 H -0.010 1.010 48 H 0.041 0.959 49 H 0.250 0.750 50 H 0.009 0.991 51 H 0.068 0.932 52 H 0.091 0.909 53 H 0.076 0.924 54 H 0.042 0.958 55 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.643 19.210 1.657 32.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.046 4.046 3 C -0.201 4.201 4 N -0.243 5.243 5 C -0.091 4.091 6 C -0.164 4.164 7 C -0.108 4.108 8 H 0.120 0.880 9 C 0.028 3.972 10 N -0.385 5.385 11 C 0.397 3.603 12 O -0.522 6.522 13 N -0.379 5.379 14 C 0.076 3.924 15 C -0.170 4.170 16 C 0.061 3.939 17 N -0.331 5.331 18 C -0.397 4.397 19 H 0.088 0.912 20 C -0.243 4.243 21 N -0.581 5.581 22 Si 0.796 3.204 23 H -0.184 1.184 24 H -0.219 1.219 25 H -0.219 1.219 26 C 0.015 3.985 27 C -0.159 4.159 28 C -0.084 4.084 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.052 0.948 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.087 0.913 36 H 0.059 0.941 37 H 0.103 0.897 38 H 0.107 0.893 39 H 0.080 0.920 40 H 0.066 0.934 41 H 0.076 0.924 42 H 0.249 0.751 43 H 0.248 0.752 44 H 0.071 0.929 45 H 0.081 0.919 46 H 0.061 0.939 47 H 0.008 0.992 48 H 0.060 0.940 49 H 0.059 0.941 50 H 0.027 0.973 51 H 0.086 0.914 52 H 0.109 0.891 53 H 0.095 0.905 54 H 0.060 0.940 55 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -25.053 19.764 1.258 31.935 hybrid contribution 0.531 -1.646 -0.927 1.963 sum -24.522 18.117 0.331 30.490 Atomic orbital electron populations 1.21791 0.93384 1.02051 1.02461 1.21899 0.96636 0.95655 0.90416 1.21853 1.00970 0.94703 1.02622 1.64867 1.09194 1.12149 1.38059 1.22869 0.99246 0.87436 0.99557 1.22497 0.94953 0.97340 1.01583 1.22223 0.91797 0.95302 1.01507 0.87960 1.21100 0.96012 0.87902 0.92227 1.44862 1.14836 1.37487 1.41340 1.16203 0.82838 0.79999 0.81266 1.90913 1.48785 1.69634 1.42894 1.45079 1.18168 1.35408 1.39290 1.20475 0.83776 0.92189 0.96003 1.22311 0.98834 0.97651 0.98188 1.20358 0.91025 0.95187 0.87332 1.44250 1.78391 1.06546 1.03867 1.19516 1.28039 0.87772 1.04404 0.91242 1.26074 0.96389 1.02754 0.99118 1.70205 1.35339 1.35762 1.16752 0.85205 0.77080 0.80406 0.77715 1.18421 1.21902 1.21889 1.21059 0.94307 0.91634 0.91485 1.22126 0.98773 1.00078 0.94923 1.23184 0.88318 0.98910 0.98004 0.92005 0.91401 0.92794 0.94755 0.91883 0.92796 0.91338 0.94146 0.89678 0.89277 0.91970 0.93409 0.92403 0.75131 0.75226 0.92851 0.91877 0.93893 0.99214 0.94042 0.94132 0.97286 0.91393 0.89102 0.90497 0.94017 0.89095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 9.20 71.98 0.66 -0.73 16 2 C 0.06 0.75 2.38 44.92 0.11 0.86 16 3 C -0.14 -1.51 8.99 71.98 0.65 -0.86 16 4 N -0.52 -6.76 5.11 -857.48 -4.38 -11.14 16 5 C 0.04 0.44 5.51 86.45 0.48 0.91 16 6 C -0.13 -1.41 6.19 31.47 0.19 -1.22 16 7 C -0.09 -1.08 3.13 -9.53 -0.03 -1.11 16 8 H 0.10 1.07 8.14 -2.38 -0.02 1.05 16 9 C 0.15 2.77 5.01 86.38 0.43 3.21 16 10 N -0.73 -13.88 5.40 -478.55 -2.59 -16.46 16 11 C 0.70 20.34 8.53 179.05 1.53 21.87 16 12 O -0.64 -25.86 16.00 -3.98 -0.06 -25.93 16 13 N -0.72 -18.85 5.08 -457.69 -2.33 -21.17 16 14 C 0.18 6.22 2.42 45.02 0.11 6.32 16 15 C -0.13 -5.26 5.65 30.67 0.17 -5.09 16 16 C 0.19 9.59 5.27 86.36 0.45 10.05 16 17 N -0.61 -30.83 2.95 -699.10 -2.06 -32.89 16 18 C -0.27 -14.69 9.50 84.04 0.80 -13.89 16 19 H 0.07 3.66 7.88 -2.91 -0.02 3.64 16 20 C -0.05 -2.68 4.90 84.86 0.42 -2.26 16 21 N -0.94 -57.24 11.67 21.65 0.25 -56.99 16 22 Si 0.97 45.04 29.58 68.60 2.03 47.07 16 23 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16 24 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 25 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 26 C 0.14 5.75 6.52 86.36 0.56 6.31 16 27 C -0.12 -3.66 5.55 30.67 0.17 -3.49 16 28 C 0.04 0.57 4.78 86.71 0.41 0.99 16 29 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.05 0.54 7.29 -2.39 -0.02 0.53 16 32 H 0.03 0.46 7.96 -2.39 -0.02 0.45 16 33 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.05 0.59 6.89 -2.39 -0.02 0.58 16 35 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.04 0.52 7.66 -2.39 -0.02 0.50 16 37 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.06 0.86 7.80 -2.39 -0.02 0.84 16 40 H 0.05 1.05 8.08 -2.38 -0.02 1.03 16 41 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.41 4.92 8.34 -92.71 -0.77 4.14 16 43 H 0.41 7.37 8.62 -92.70 -0.80 6.57 16 44 H 0.05 2.17 7.58 -2.38 -0.02 2.16 16 45 H 0.06 2.44 8.14 -2.38 -0.02 2.42 16 46 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 47 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 48 H 0.04 2.36 6.59 -2.39 -0.02 2.35 16 49 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 50 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 51 H 0.07 2.62 7.93 -2.38 -0.02 2.60 16 52 H 0.09 2.22 8.14 -2.38 -0.02 2.20 16 53 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 54 H 0.04 0.61 7.93 -2.39 -0.02 0.59 16 55 H 0.09 1.10 7.65 -2.38 -0.02 1.08 16 Total: -1.00 -73.67 421.12 -2.74 -76.41 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: -0.72 Total: 19.24 kcal Atomic # 6 Polarization: 14.74 SS G_CDS: 7.12 Total: 21.86 kcal Atomic # 7 Polarization: -127.55 SS G_CDS: -11.10 Total: -138.65 kcal Atomic # 8 Polarization: -25.86 SS G_CDS: -0.06 Total: -25.93 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -73.67 -2.74 -76.41 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609339137.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.471 kcal (2) G-P(sol) polarization free energy of solvation -73.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds