Wall clock time and date at job start Tue Mar 31 2020 22:16:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46906 * 109.47099 * 2 1 4 4 C 1.46842 * 110.99898 * 293.94949 * 3 2 1 5 5 C 1.53040 * 109.52588 * 185.84217 * 4 3 2 6 6 C 1.53119 * 109.27570 * 300.82248 * 5 4 3 7 7 C 1.53119 * 109.16083 * 57.65322 * 6 5 4 8 8 H 1.09000 * 109.50374 * 62.32642 * 7 6 5 9 9 C 1.53005 * 109.50371 * 182.40249 * 7 6 5 10 10 N 1.46500 * 109.46909 * 294.92110 * 9 7 6 11 11 C 1.34777 * 119.99602 * 180.02562 * 10 9 7 12 12 O 1.21588 * 120.00320 * 359.97438 * 11 10 9 13 13 N 1.34778 * 119.99666 * 180.02562 * 11 10 9 14 14 C 1.46502 * 119.99730 * 179.97438 * 13 11 10 15 15 C 1.53040 * 109.46195 * 275.02569 * 14 13 11 16 16 C 1.53193 * 109.31209 * 178.60101 * 15 14 13 17 17 N 1.46915 * 108.76503 * 54.65686 * 16 15 14 18 18 C 1.36940 * 120.63479 * 126.40593 * 17 16 15 19 19 H 1.08000 * 119.99187 * 332.60973 * 18 17 16 20 20 C 1.38806 * 120.00233 * 152.60680 * 18 17 16 21 21 N 1.31626 * 119.99555 * 159.34741 * 20 18 17 22 22 Si 1.86801 * 120.00327 * 339.34475 * 20 18 17 23 23 H 1.48499 * 109.47111 * 92.94459 * 22 20 18 24 24 H 1.48499 * 109.47106 * 212.94557 * 22 20 18 25 25 H 1.48494 * 109.46657 * 332.94413 * 22 20 18 26 26 C 1.46928 * 118.74276 * 306.38160 * 17 16 15 27 27 C 1.53035 * 109.45942 * 154.96981 * 14 13 11 28 28 C 1.46838 * 110.99841 * 58.20639 * 3 2 1 29 29 H 1.08996 * 109.47200 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47170 * 300.00455 * 1 2 3 31 31 H 1.09003 * 109.47144 * 59.99953 * 1 2 3 32 32 H 1.08998 * 109.47457 * 239.99897 * 2 1 3 33 33 H 1.09002 * 109.47343 * 119.99532 * 2 1 3 34 34 H 1.08998 * 109.46324 * 65.82391 * 4 3 2 35 35 H 1.09004 * 109.46092 * 305.85353 * 4 3 2 36 36 H 1.09000 * 109.50135 * 180.88042 * 5 4 3 37 37 H 1.08993 * 109.50226 * 60.76269 * 5 4 3 38 38 H 1.08998 * 109.52343 * 297.74674 * 6 5 4 39 39 H 1.08996 * 109.57553 * 177.58917 * 6 5 4 40 40 H 1.08995 * 109.46769 * 54.92383 * 9 7 6 41 41 H 1.09005 * 109.46599 * 174.92042 * 9 7 6 42 42 H 0.96995 * 120.00406 * 359.97438 * 10 9 7 43 43 H 0.96991 * 120.00403 * 0.02562 * 13 11 10 44 44 H 1.09005 * 109.45756 * 35.00084 * 14 13 11 45 45 H 1.08994 * 109.49998 * 298.56673 * 15 14 13 46 46 H 1.09008 * 109.49497 * 58.66597 * 15 14 13 47 47 H 1.09007 * 109.60049 * 294.86853 * 16 15 14 48 48 H 1.08997 * 109.70071 * 174.50888 * 16 15 14 49 49 H 0.97006 * 119.99738 * 180.02562 * 21 20 18 50 50 H 1.08997 * 109.58739 * 293.82844 * 26 17 16 51 51 H 1.08996 * 109.70759 * 173.46368 * 26 17 16 52 52 H 1.08998 * 109.49949 * 301.34368 * 27 14 13 53 53 H 1.09008 * 109.49839 * 61.40301 * 27 14 13 54 54 H 1.09004 * 109.50108 * 54.16247 * 28 3 2 55 55 H 1.09000 * 109.43046 * 294.19420 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6704 2.0667 -1.2529 5 6 2.3185 3.4528 -1.2790 6 6 1.8235 4.2649 -0.0790 7 6 2.1568 3.5100 1.2108 8 1 3.2380 3.4076 1.3034 9 6 1.6124 4.2858 2.4119 10 7 2.3129 5.5677 2.5234 11 6 1.9976 6.4237 3.5156 12 8 1.1316 6.1324 4.3177 13 7 2.6417 7.6032 3.6178 14 6 2.2987 8.5340 4.6959 15 6 1.1036 9.3897 4.2698 16 6 0.7258 10.3374 5.4126 17 7 1.9142 11.1104 5.7980 18 6 1.8737 12.4786 5.8386 19 1 1.1857 13.0174 5.2040 20 6 2.7169 13.1728 6.6952 21 7 2.9854 14.4414 6.4691 22 14 3.4703 12.3069 8.1690 23 1 4.8026 11.7664 7.7977 24 1 3.6219 13.2729 9.2865 25 1 2.5851 11.1930 8.5942 26 6 3.1470 10.3877 6.1396 27 6 3.4974 9.4391 4.9887 28 6 1.5141 2.1219 1.1652 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 0.5875 2.1708 -1.3200 35 1 2.0319 1.4808 -2.0980 36 1 2.0463 3.9645 -2.2021 37 1 3.4022 3.3488 -1.2258 38 1 0.7447 4.4023 -0.1523 39 1 2.3147 5.2379 -0.0689 40 1 0.5460 4.4651 2.2756 41 1 1.7700 3.7053 3.3210 42 1 3.0040 5.8000 1.8838 43 1 3.3317 7.8362 2.9773 44 1 2.0409 7.9713 5.5932 45 1 1.3690 9.9716 3.3872 46 1 0.2570 8.7430 4.0388 47 1 0.3738 9.7584 6.2665 48 1 -0.0604 11.0162 5.0824 49 1 3.5750 14.9265 7.0676 50 1 2.9925 9.8127 7.0526 51 1 3.9603 11.0979 6.2882 52 1 4.3550 8.8277 5.2694 53 1 3.7405 10.0201 4.0990 54 1 1.7620 1.5768 2.0760 55 1 0.4318 2.2252 1.0872 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609340320.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:51 Heat of formation + Delta-G solvation = -38.580404 kcal Electronic energy + Delta-G solvation = -30038.816239 eV Core-core repulsion = 26109.618333 eV Total energy + Delta-G solvation = -3929.197906 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.29312 -40.34406 -39.27937 -36.82383 -35.94545 -34.63498 -33.98668 -32.49237 -31.96385 -31.34550 -30.32264 -27.33623 -26.28987 -25.70469 -24.50009 -23.54676 -23.25481 -22.13942 -21.80690 -21.18673 -20.39318 -19.42332 -18.66632 -17.66476 -17.03808 -16.79425 -16.53773 -16.14926 -15.94374 -15.67495 -15.59828 -15.42604 -15.37450 -15.26944 -14.88383 -14.67958 -14.52740 -14.29355 -14.16231 -13.83204 -13.77067 -13.47582 -13.27082 -13.11891 -12.93448 -12.65153 -12.58251 -12.53136 -12.26690 -12.25261 -12.01450 -11.77140 -11.62309 -11.59088 -11.54848 -11.41351 -11.35315 -11.24954 -11.20407 -10.70191 -10.29642 -9.72258 -9.22240 -8.95792 -8.15247 -5.47509 1.30388 1.43905 1.52658 1.70979 2.20410 2.42488 2.94553 3.06753 3.28149 3.39849 3.73752 3.79321 3.80383 3.89949 4.01021 4.11849 4.25112 4.25229 4.30411 4.33642 4.39141 4.42499 4.49598 4.50146 4.58214 4.61346 4.64630 4.67714 4.73339 4.79774 4.86645 4.90333 4.93437 4.96636 4.97731 5.04170 5.05128 5.08647 5.15763 5.17759 5.19166 5.27854 5.29010 5.41348 5.45836 5.55753 5.59641 5.87633 6.05402 6.13794 6.14807 6.18048 6.91510 7.15390 7.62203 7.63989 8.02922 9.04455 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.032751 B = 0.001810 C = 0.001792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.741025 B =15464.955341 C =15623.278958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.050 3.950 3 N -0.543 5.543 4 C 0.051 3.949 5 C -0.114 4.114 6 C -0.115 4.115 7 C -0.082 4.082 8 H 0.090 0.910 9 C 0.149 3.851 10 N -0.730 5.730 11 C 0.700 3.300 12 O -0.637 6.637 13 N -0.727 5.727 14 C 0.179 3.821 15 C -0.127 4.127 16 C 0.147 3.853 17 N -0.618 5.618 18 C -0.248 4.248 19 H 0.053 0.947 20 C -0.033 4.033 21 N -0.955 5.955 22 Si 0.944 3.056 23 H -0.268 1.268 24 H -0.311 1.311 25 H -0.266 1.266 26 C 0.121 3.879 27 C -0.126 4.126 28 C 0.063 3.937 29 H 0.068 0.932 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.032 0.968 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.071 0.929 38 H 0.054 0.946 39 H 0.072 0.928 40 H 0.051 0.949 41 H 0.056 0.944 42 H 0.410 0.590 43 H 0.410 0.590 44 H 0.066 0.934 45 H 0.062 0.938 46 H 0.061 0.939 47 H 0.028 0.972 48 H 0.058 0.942 49 H 0.262 0.738 50 H 0.031 0.969 51 H 0.059 0.941 52 H 0.089 0.911 53 H 0.073 0.927 54 H 0.077 0.923 55 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.072 -30.865 -17.966 35.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.078 4.078 3 N -0.267 5.267 4 C -0.077 4.077 5 C -0.151 4.151 6 C -0.153 4.153 7 C -0.101 4.101 8 H 0.108 0.892 9 C 0.024 3.976 10 N -0.386 5.386 11 C 0.399 3.601 12 O -0.518 6.518 13 N -0.382 5.382 14 C 0.074 3.926 15 C -0.167 4.167 16 C 0.021 3.979 17 N -0.343 5.343 18 C -0.378 4.378 19 H 0.070 0.930 20 C -0.228 4.228 21 N -0.601 5.601 22 Si 0.773 3.227 23 H -0.194 1.194 24 H -0.240 1.240 25 H -0.191 1.191 26 C -0.004 4.004 27 C -0.166 4.166 28 C -0.066 4.066 29 H 0.087 0.913 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.100 0.900 33 H 0.096 0.904 34 H 0.050 0.950 35 H 0.098 0.902 36 H 0.094 0.906 37 H 0.090 0.910 38 H 0.072 0.928 39 H 0.090 0.910 40 H 0.070 0.930 41 H 0.075 0.925 42 H 0.247 0.753 43 H 0.246 0.754 44 H 0.084 0.916 45 H 0.081 0.919 46 H 0.080 0.920 47 H 0.046 0.954 48 H 0.076 0.924 49 H 0.071 0.929 50 H 0.049 0.951 51 H 0.077 0.923 52 H 0.107 0.893 53 H 0.092 0.908 54 H 0.096 0.904 55 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 0.862 -31.042 -17.178 35.489 hybrid contribution -0.265 0.571 0.377 0.734 sum 0.597 -30.471 -16.801 34.801 Atomic orbital electron populations 1.22403 0.98031 1.02802 1.01632 1.22199 0.93026 0.89223 1.03363 1.62118 1.59611 1.02519 1.02427 1.22156 0.97954 0.95574 0.91983 1.21567 1.01176 0.94302 0.98101 1.21640 1.00942 0.98867 0.93844 1.21285 1.01619 0.93869 0.93348 0.89170 1.21110 0.95718 0.82587 0.98175 1.44916 1.43421 1.18926 1.31383 1.16137 0.81430 0.80687 0.81799 1.90900 1.36903 1.78172 1.45844 1.45084 1.42471 1.17023 1.33615 1.20493 0.94460 0.88428 0.89235 1.22205 0.98163 0.97403 0.98967 1.21008 0.88742 0.93032 0.95095 1.44503 1.07559 1.01931 1.80305 1.18861 1.20587 0.81496 1.16834 0.92956 1.25879 1.00333 0.95795 1.00792 1.69966 1.39630 1.11265 1.39275 0.85952 0.78961 0.77502 0.80286 1.19431 1.24041 1.19094 1.21373 0.88848 0.94182 0.96024 1.22153 0.97278 0.97212 0.99921 1.21971 0.97005 0.93524 0.94078 0.91273 0.93007 0.92865 0.89952 0.90374 0.95020 0.90189 0.90567 0.91019 0.92753 0.90955 0.93045 0.92545 0.75288 0.75389 0.91621 0.91906 0.91989 0.95409 0.92352 0.92933 0.95106 0.92297 0.89251 0.90801 0.90419 0.94585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.73 9.21 71.98 0.66 -1.07 16 2 C 0.05 0.46 6.08 86.30 0.52 0.98 16 3 N -0.54 -6.14 4.86 -896.37 -4.35 -10.49 16 4 C 0.05 0.51 5.05 86.33 0.44 0.95 16 5 C -0.11 -1.04 6.09 30.65 0.19 -0.86 16 6 C -0.12 -1.21 5.13 30.67 0.16 -1.05 16 7 C -0.08 -0.95 2.39 -10.74 -0.03 -0.97 16 8 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 9 C 0.15 2.49 5.07 86.38 0.44 2.93 16 10 N -0.73 -12.79 5.31 -478.52 -2.54 -15.34 16 11 C 0.70 18.48 8.53 179.05 1.53 20.01 16 12 O -0.64 -23.04 16.01 -3.99 -0.06 -23.10 16 13 N -0.73 -17.28 5.08 -457.68 -2.33 -19.61 16 14 C 0.18 5.51 2.42 45.02 0.11 5.62 16 15 C -0.13 -4.29 5.65 30.67 0.17 -4.12 16 16 C 0.15 5.95 6.52 86.36 0.56 6.51 16 17 N -0.62 -29.20 2.77 -699.11 -1.94 -31.14 16 18 C -0.25 -14.11 10.03 84.03 0.84 -13.27 16 19 H 0.05 3.25 8.06 -2.91 -0.02 3.23 16 20 C -0.03 -1.94 5.23 84.86 0.44 -1.49 16 21 N -0.96 -59.81 13.97 21.65 0.30 -59.51 16 22 Si 0.94 46.44 24.35 68.60 1.67 48.11 16 23 H -0.27 -12.17 6.62 99.48 0.66 -11.52 16 24 H -0.31 -15.63 7.11 99.48 0.71 -14.93 16 25 H -0.27 -12.79 6.63 99.48 0.66 -12.13 16 26 C 0.12 5.02 4.20 86.36 0.36 5.38 16 27 C -0.13 -3.93 5.55 30.67 0.17 -3.76 16 28 C 0.06 0.75 4.12 86.33 0.36 1.10 16 29 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.05 0.56 6.51 -2.39 -0.02 0.54 16 31 H 0.05 0.52 6.68 -2.39 -0.02 0.50 16 32 H 0.08 0.65 8.06 -2.39 -0.02 0.63 16 33 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.03 0.35 6.75 -2.39 -0.02 0.33 16 35 H 0.08 0.69 8.06 -2.38 -0.02 0.68 16 36 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 37 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.07 0.68 7.26 -2.39 -0.02 0.66 16 40 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 42 H 0.41 4.63 7.69 -92.71 -0.71 3.92 16 43 H 0.41 6.99 8.62 -92.71 -0.80 6.19 16 44 H 0.07 2.30 7.58 -2.38 -0.02 2.28 16 45 H 0.06 2.11 8.14 -2.39 -0.02 2.10 16 46 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 47 H 0.03 1.12 8.14 -2.38 -0.02 1.10 16 48 H 0.06 2.40 7.93 -2.39 -0.02 2.38 16 49 H 0.26 15.56 8.31 -92.70 -0.77 14.79 16 50 H 0.03 1.27 7.08 -2.39 -0.02 1.25 16 51 H 0.06 2.65 4.50 -2.39 -0.01 2.64 16 52 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 53 H 0.07 2.28 8.14 -2.38 -0.02 2.26 16 54 H 0.08 0.93 8.12 -2.38 -0.02 0.91 16 55 H 0.04 0.47 6.60 -2.39 -0.02 0.45 16 Total: -1.00 -72.39 407.62 -3.06 -75.44 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: -0.74 Total: 18.73 kcal Atomic # 6 Polarization: 9.97 SS G_CDS: 6.93 Total: 16.89 kcal Atomic # 7 Polarization: -125.22 SS G_CDS: -10.85 Total: -136.08 kcal Atomic # 8 Polarization: -23.04 SS G_CDS: -0.06 Total: -23.10 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 1.67 Total: 48.11 kcal Total: -72.39 -3.06 -75.44 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609340320.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.860 kcal (2) G-P(sol) polarization free energy of solvation -72.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds