Wall clock time and date at job start Tue Mar 31 2020 22:16:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46897 * 109.47422 * 2 1 4 4 C 1.46845 * 111.00200 * 294.21578 * 3 2 1 5 5 C 1.53042 * 109.52165 * 174.16049 * 4 3 2 6 6 C 1.53119 * 109.28119 * 59.17791 * 5 4 3 7 7 C 1.53122 * 109.15961 * 302.34677 * 6 5 4 8 8 H 1.09007 * 109.50156 * 297.71351 * 7 6 5 9 9 C 1.53000 * 109.53493 * 177.61331 * 7 6 5 10 10 N 1.46502 * 109.46783 * 65.17815 * 9 7 6 11 11 C 1.34776 * 119.99433 * 179.97438 * 10 9 7 12 12 O 1.21584 * 120.00745 * 0.02562 * 11 10 9 13 13 N 1.34788 * 119.99861 * 179.97438 * 11 10 9 14 14 C 1.46499 * 119.99990 * 180.02562 * 13 11 10 15 15 C 1.53039 * 109.45838 * 275.06998 * 14 13 11 16 16 C 1.53198 * 109.30888 * 178.61757 * 15 14 13 17 17 N 1.46925 * 108.77602 * 54.63377 * 16 15 14 18 18 C 1.36932 * 120.62662 * 126.41326 * 17 16 15 19 19 H 1.08005 * 119.99772 * 207.65724 * 18 17 16 20 20 C 1.38813 * 120.00346 * 27.66283 * 18 17 16 21 21 N 1.31616 * 119.99815 * 17.36869 * 20 18 17 22 22 Si 1.86806 * 120.00022 * 197.36491 * 20 18 17 23 23 H 1.48497 * 109.46997 * 90.00169 * 22 20 18 24 24 H 1.48502 * 109.47078 * 209.99887 * 22 20 18 25 25 H 1.48502 * 109.46986 * 330.00104 * 22 20 18 26 26 C 1.46921 * 118.73930 * 306.39203 * 17 16 15 27 27 C 1.53035 * 109.45647 * 155.00108 * 14 13 11 28 28 C 1.46850 * 111.00008 * 169.99981 * 3 2 1 29 29 H 1.09005 * 109.46634 * 299.99778 * 1 2 3 30 30 H 1.08998 * 109.46965 * 59.99197 * 1 2 3 31 31 H 1.08995 * 109.47490 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47463 * 120.00707 * 2 1 3 33 33 H 1.09005 * 109.46634 * 240.00222 * 2 1 3 34 34 H 1.08994 * 109.45963 * 294.17298 * 4 3 2 35 35 H 1.08992 * 109.46750 * 54.14533 * 4 3 2 36 36 H 1.08999 * 109.50212 * 299.23698 * 5 4 3 37 37 H 1.08999 * 109.53448 * 179.13701 * 5 4 3 38 38 H 1.08997 * 109.52278 * 182.44236 * 6 5 4 39 39 H 1.08996 * 109.52333 * 62.24774 * 6 5 4 40 40 H 1.09003 * 109.46950 * 185.17640 * 9 7 6 41 41 H 1.08999 * 109.47109 * 305.17430 * 9 7 6 42 42 H 0.96997 * 120.00632 * 359.97438 * 10 9 7 43 43 H 0.96995 * 119.99457 * 0.02562 * 13 11 10 44 44 H 1.08996 * 109.46286 * 35.03005 * 14 13 11 45 45 H 1.09000 * 109.49799 * 298.56351 * 15 14 13 46 46 H 1.08994 * 109.50160 * 58.66456 * 15 14 13 47 47 H 1.09004 * 109.58450 * 294.84161 * 16 15 14 48 48 H 1.09002 * 109.58188 * 174.42249 * 16 15 14 49 49 H 0.97004 * 119.99919 * 179.97438 * 21 20 18 50 50 H 1.09003 * 109.58504 * 293.81798 * 26 17 16 51 51 H 1.09000 * 109.58548 * 173.40003 * 26 17 16 52 52 H 1.08998 * 109.50479 * 301.33543 * 27 14 13 53 53 H 1.09001 * 109.49826 * 61.43773 * 27 14 13 54 54 H 1.08993 * 109.46642 * 305.86089 * 28 3 2 55 55 H 1.08999 * 109.45973 * 65.84006 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6651 2.0686 -1.2503 5 6 2.0608 3.5440 -1.1565 6 6 3.5677 3.6482 -0.9056 7 6 3.9176 2.8873 0.3763 8 1 3.4076 3.3468 1.2230 9 6 5.4299 2.9357 0.6033 10 7 5.8420 4.3190 0.8543 11 6 7.1390 4.6046 1.0832 12 8 7.9673 3.7145 1.0811 13 7 7.5183 5.8774 1.3136 14 6 8.9283 6.1880 1.5620 15 6 9.2429 5.9788 3.0450 16 6 10.7259 6.2712 3.2944 17 7 11.0323 7.6192 2.7968 18 6 11.6290 8.5445 3.6110 19 1 11.4607 9.5983 3.4450 20 6 12.4504 8.1280 4.6497 21 7 12.9327 6.9034 4.6567 22 14 12.8711 9.3056 6.0374 23 1 11.8597 9.1795 7.1174 24 1 14.2148 8.9754 6.5766 25 1 12.8732 10.6981 5.5214 26 6 10.6868 7.9554 1.4089 27 6 9.2043 7.6442 1.1806 28 6 3.4681 1.4310 0.2381 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5140 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8934 -0.5139 0.8899 33 1 1.8933 -0.5138 -0.8901 34 1 2.1942 1.6028 -2.0815 35 1 0.5904 1.9907 -1.4147 36 1 1.5216 4.0138 -0.3339 37 1 1.8116 4.0482 -2.0901 38 1 3.8469 4.6960 -0.7949 39 1 4.1079 3.2132 -1.7464 40 1 5.6881 2.3179 1.4634 41 1 5.9424 2.5587 -0.2817 42 1 5.1814 5.0292 0.8556 43 1 6.8576 6.5875 1.3150 44 1 9.5563 5.5301 0.9614 45 1 8.6330 6.6542 3.6450 46 1 9.0239 4.9475 3.3214 47 1 11.3365 5.5390 2.7660 48 1 10.9336 6.2202 4.3632 49 1 13.5070 6.6125 5.3823 50 1 11.2943 7.3607 0.7268 51 1 10.8688 9.0157 1.2336 52 1 8.9579 7.7982 0.1301 53 1 8.5948 8.3038 1.7983 54 1 3.7029 0.8899 1.1546 55 1 3.9888 0.9684 -0.6003 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609340321.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:54 Heat of formation + Delta-G solvation = -43.289093 kcal Electronic energy + Delta-G solvation = -29825.986100 eV Core-core repulsion = 25896.584010 eV Total energy + Delta-G solvation = -3929.402090 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.26511 -40.21658 -39.06823 -36.76097 -35.90949 -34.60729 -33.82039 -32.37859 -31.66942 -31.15565 -30.58341 -27.32691 -26.44643 -25.19609 -23.89601 -23.69843 -23.41464 -21.82480 -21.74152 -21.05679 -20.68423 -19.28013 -18.64146 -17.56785 -16.98181 -16.79822 -16.51847 -16.20589 -15.88986 -15.69486 -15.34852 -15.31686 -15.19590 -15.11515 -14.87283 -14.72706 -14.35441 -14.26083 -14.00240 -13.85736 -13.44019 -13.17497 -13.07168 -12.99899 -12.64804 -12.61814 -12.60065 -12.57416 -12.10383 -12.05663 -12.01395 -11.99406 -11.84822 -11.57338 -11.51933 -11.43503 -11.29471 -11.22825 -11.13486 -10.57549 -10.28301 -9.70211 -9.28619 -8.71019 -7.86142 -5.32189 1.48323 1.49881 1.58924 1.71805 2.20891 2.52645 2.88958 3.27916 3.37051 3.68523 3.73374 3.77414 3.89975 3.90895 4.12064 4.15856 4.19648 4.31921 4.36706 4.38772 4.49019 4.49725 4.53936 4.59924 4.63905 4.67300 4.69155 4.79376 4.82156 4.86470 4.90078 4.92488 5.03800 5.07052 5.09362 5.10857 5.14228 5.15278 5.18744 5.25618 5.33828 5.37245 5.45062 5.47910 5.55480 5.63501 5.65482 5.70975 6.07140 6.13225 6.16955 6.39495 7.14161 7.17840 7.65578 7.85590 8.38406 9.20914 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.029309 B = 0.001733 C = 0.001695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.099174 B =16150.851309 C =16514.682491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.047 3.953 3 N -0.545 5.545 4 C 0.050 3.950 5 C -0.112 4.112 6 C -0.115 4.115 7 C -0.081 4.081 8 H 0.090 0.910 9 C 0.148 3.852 10 N -0.728 5.728 11 C 0.697 3.303 12 O -0.641 6.641 13 N -0.725 5.725 14 C 0.181 3.819 15 C -0.130 4.130 16 C 0.182 3.818 17 N -0.609 5.609 18 C -0.261 4.261 19 H 0.075 0.925 20 C -0.055 4.055 21 N -0.939 5.939 22 Si 0.970 3.030 23 H -0.286 1.286 24 H -0.298 1.298 25 H -0.264 1.264 26 C 0.141 3.859 27 C -0.120 4.120 28 C 0.064 3.936 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.031 0.969 34 H 0.027 0.973 35 H 0.084 0.916 36 H 0.071 0.929 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.055 0.945 40 H 0.052 0.948 41 H 0.052 0.948 42 H 0.411 0.589 43 H 0.411 0.589 44 H 0.053 0.947 45 H 0.061 0.939 46 H 0.042 0.958 47 H -0.012 1.012 48 H 0.055 0.945 49 H 0.249 0.751 50 H 0.011 0.989 51 H 0.069 0.931 52 H 0.091 0.909 53 H 0.076 0.924 54 H 0.077 0.923 55 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.129 -7.953 -13.355 33.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.080 4.080 3 N -0.270 5.270 4 C -0.078 4.078 5 C -0.150 4.150 6 C -0.152 4.152 7 C -0.100 4.100 8 H 0.108 0.892 9 C 0.023 3.977 10 N -0.385 5.385 11 C 0.397 3.603 12 O -0.522 6.522 13 N -0.380 5.380 14 C 0.075 3.925 15 C -0.170 4.170 16 C 0.055 3.945 17 N -0.332 5.332 18 C -0.391 4.391 19 H 0.093 0.907 20 C -0.250 4.250 21 N -0.585 5.585 22 Si 0.798 3.202 23 H -0.213 1.213 24 H -0.225 1.225 25 H -0.188 1.188 26 C 0.015 3.985 27 C -0.159 4.159 28 C -0.065 4.065 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.049 0.951 34 H 0.046 0.954 35 H 0.102 0.898 36 H 0.090 0.910 37 H 0.097 0.903 38 H 0.093 0.907 39 H 0.074 0.926 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.248 0.752 43 H 0.247 0.753 44 H 0.072 0.928 45 H 0.079 0.921 46 H 0.060 0.940 47 H 0.006 0.994 48 H 0.073 0.927 49 H 0.058 0.942 50 H 0.029 0.971 51 H 0.087 0.913 52 H 0.110 0.890 53 H 0.095 0.905 54 H 0.095 0.905 55 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -28.522 -8.571 -12.897 32.454 hybrid contribution 0.828 0.116 0.329 0.898 sum -27.694 -8.455 -12.568 31.565 Atomic orbital electron populations 1.21768 0.93940 1.02183 1.02291 1.22121 0.96849 0.88227 1.00829 1.61947 1.13190 1.16209 1.35626 1.22211 1.01271 0.94863 0.89445 1.21563 0.95408 0.95338 1.02710 1.21645 0.96564 1.00685 0.96325 1.21267 0.92348 0.96457 0.99912 0.89192 1.21110 0.94681 0.81534 1.00346 1.44880 1.06040 1.10707 1.76890 1.16201 0.83206 0.83227 0.77663 1.90910 1.52842 1.47450 1.61001 1.45084 1.09790 1.07024 1.76081 1.20485 0.80479 0.96783 0.94705 1.22317 0.98270 0.99465 0.96985 1.20475 0.90445 0.84963 0.98571 1.44348 1.69511 1.10911 1.08447 1.19598 1.20975 0.89395 1.09128 0.90729 1.25871 0.97399 0.98333 1.03419 1.70218 1.35616 1.19752 1.32942 0.85229 0.76412 0.79093 0.79491 1.21323 1.22512 1.18814 1.21058 0.93301 0.99075 0.85097 1.22128 0.97896 0.93725 1.02174 1.21959 0.87681 0.95877 1.00950 0.92348 0.92431 0.91348 0.90697 0.95059 0.95449 0.89753 0.91004 0.90280 0.90705 0.92624 0.92968 0.92933 0.75187 0.75264 0.92837 0.92075 0.93957 0.99401 0.92689 0.94221 0.97088 0.91264 0.89037 0.90539 0.90472 0.94988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 9.84 71.98 0.71 -0.58 16 2 C 0.05 0.53 5.68 86.30 0.49 1.02 16 3 N -0.54 -7.00 4.66 -896.38 -4.17 -11.18 16 4 C 0.05 0.54 5.29 86.33 0.46 1.00 16 5 C -0.11 -1.07 6.09 30.65 0.19 -0.88 16 6 C -0.11 -1.26 5.13 30.67 0.16 -1.10 16 7 C -0.08 -1.05 2.38 -10.74 -0.03 -1.08 16 8 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 9 C 0.15 2.82 5.07 86.38 0.44 3.25 16 10 N -0.73 -14.43 5.31 -478.52 -2.54 -16.97 16 11 C 0.70 20.75 8.53 179.05 1.53 22.28 16 12 O -0.64 -26.18 16.01 -3.98 -0.06 -26.24 16 13 N -0.72 -19.23 5.08 -457.69 -2.33 -21.55 16 14 C 0.18 6.28 2.41 45.02 0.11 6.38 16 15 C -0.13 -5.37 5.65 30.67 0.17 -5.20 16 16 C 0.18 9.40 5.31 86.36 0.46 9.86 16 17 N -0.61 -30.93 2.99 -699.08 -2.09 -33.02 16 18 C -0.26 -14.35 9.58 84.03 0.81 -13.54 16 19 H 0.08 3.90 7.89 -2.91 -0.02 3.88 16 20 C -0.06 -3.13 4.91 84.86 0.42 -2.71 16 21 N -0.94 -57.42 11.19 21.65 0.24 -57.18 16 22 Si 0.97 45.26 29.59 68.60 2.03 47.29 16 23 H -0.29 -13.18 7.11 99.48 0.71 -12.48 16 24 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 25 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 26 C 0.14 5.68 6.52 86.36 0.56 6.24 16 27 C -0.12 -3.68 5.55 30.67 0.17 -3.51 16 28 C 0.06 0.88 4.74 86.33 0.41 1.28 16 29 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 30 H 0.06 0.48 6.43 -2.39 -0.02 0.46 16 31 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.07 0.83 7.99 -2.39 -0.02 0.82 16 33 H 0.03 0.36 8.12 -2.38 -0.02 0.34 16 34 H 0.03 0.33 8.14 -2.39 -0.02 0.31 16 35 H 0.08 0.80 6.21 -2.39 -0.01 0.78 16 36 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 38 H 0.07 0.71 7.27 -2.39 -0.02 0.69 16 39 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.41 5.27 7.70 -92.71 -0.71 4.56 16 43 H 0.41 7.58 8.62 -92.71 -0.80 6.78 16 44 H 0.05 2.19 7.58 -2.39 -0.02 2.17 16 45 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 46 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 47 H -0.01 -0.69 8.14 -2.38 -0.02 -0.71 16 48 H 0.05 3.19 6.04 -2.39 -0.01 3.18 16 49 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 50 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 51 H 0.07 2.63 7.93 -2.39 -0.02 2.61 16 52 H 0.09 2.22 8.14 -2.39 -0.02 2.21 16 53 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 54 H 0.08 1.08 8.01 -2.39 -0.02 1.06 16 55 H 0.03 0.47 8.14 -2.39 -0.02 0.45 16 Total: -1.00 -73.50 417.20 -2.54 -76.04 By element: Atomic # 1 Polarization: 20.75 SS G_CDS: -0.65 Total: 20.10 kcal Atomic # 6 Polarization: 15.66 SS G_CDS: 7.04 Total: 22.71 kcal Atomic # 7 Polarization: -129.01 SS G_CDS: -10.89 Total: -139.90 kcal Atomic # 8 Polarization: -26.18 SS G_CDS: -0.06 Total: -26.24 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -73.50 -2.54 -76.04 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609340321.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.750 kcal (2) G-P(sol) polarization free energy of solvation -73.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds