Wall clock time and date at job start Tue Mar 31 2020 22:07:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.50074 * 2 1 4 4 C 1.53125 * 109.53011 * 120.09746 * 2 1 3 5 5 C 1.53123 * 109.15708 * 177.61316 * 4 2 1 6 6 C 1.53038 * 109.27898 * 302.34808 * 5 4 2 7 7 N 1.46844 * 109.52534 * 59.17437 * 6 5 4 8 8 C 1.46902 * 110.99793 * 174.16375 * 7 6 5 9 9 C 1.53000 * 109.46975 * 294.21055 * 8 7 6 10 10 N 1.46496 * 109.47353 * 180.02562 * 9 8 7 11 11 C 1.34771 * 120.00485 * 180.02562 * 10 9 8 12 12 O 1.21587 * 120.00013 * 359.97438 * 11 10 9 13 13 N 1.34784 * 120.00117 * 179.97438 * 11 10 9 14 14 C 1.46505 * 119.99601 * 180.02562 * 13 11 10 15 15 C 1.53037 * 109.45562 * 155.00078 * 14 13 11 16 16 C 1.53191 * 109.31329 * 181.38121 * 15 14 13 17 17 N 1.46921 * 108.77663 * 305.36980 * 16 15 14 18 18 C 1.36942 * 120.62733 * 233.32958 * 17 16 15 19 19 H 1.08008 * 119.99813 * 151.87450 * 18 17 16 20 20 C 1.38805 * 120.00309 * 331.88271 * 18 17 16 21 21 N 1.31622 * 119.99962 * 343.11515 * 20 18 17 22 22 Si 1.86795 * 120.00332 * 163.11972 * 20 18 17 23 23 H 1.48504 * 109.47268 * 89.99585 * 22 20 18 24 24 H 1.48502 * 109.47416 * 209.99914 * 22 20 18 25 25 H 1.48507 * 109.47127 * 329.99639 * 22 20 18 26 26 C 1.46922 * 118.74484 * 53.59992 * 17 16 15 27 27 C 1.53042 * 109.45687 * 275.06460 * 14 13 11 28 28 C 1.46845 * 111.20213 * 298.26249 * 7 6 5 29 29 H 1.08997 * 109.47509 * 180.08293 * 1 2 3 30 30 H 1.09001 * 109.47031 * 300.08294 * 1 2 3 31 31 H 1.08994 * 109.46908 * 60.07807 * 1 2 3 32 32 H 1.08997 * 109.52241 * 297.51343 * 4 2 1 33 33 H 1.08998 * 109.52604 * 57.71280 * 4 2 1 34 34 H 1.09002 * 109.50068 * 62.28504 * 5 4 2 35 35 H 1.08998 * 109.50390 * 182.36114 * 5 4 2 36 36 H 1.08997 * 109.45579 * 299.16093 * 6 5 4 37 37 H 1.08997 * 109.45909 * 179.19745 * 6 5 4 38 38 H 1.09001 * 109.46741 * 174.21865 * 8 7 6 39 39 H 1.08990 * 109.47252 * 54.21044 * 8 7 6 40 40 H 1.09002 * 109.47262 * 60.00023 * 9 8 7 41 41 H 1.09005 * 109.47387 * 300.00344 * 9 8 7 42 42 H 0.97006 * 119.99624 * 0.02562 * 10 9 8 43 43 H 0.96992 * 119.99883 * 359.97438 * 13 11 10 44 44 H 1.08996 * 109.45377 * 35.03438 * 14 13 11 45 45 H 1.09001 * 109.50277 * 61.43340 * 15 14 13 46 46 H 1.09004 * 109.52866 * 301.35261 * 15 14 13 47 47 H 1.09002 * 109.58966 * 185.57851 * 16 15 14 48 48 H 1.09011 * 109.58493 * 65.15354 * 16 15 14 49 49 H 0.96995 * 120.00418 * 180.02562 * 21 20 18 50 50 H 1.09003 * 109.58165 * 66.18344 * 26 17 16 51 51 H 1.08999 * 109.59419 * 186.60311 * 26 17 16 52 52 H 1.08993 * 109.49919 * 298.56854 * 27 14 13 53 53 H 1.08997 * 109.49587 * 58.66845 * 27 14 13 54 54 H 1.08997 * 109.46593 * 181.76056 * 28 7 6 55 55 H 1.09006 * 109.45951 * 301.73593 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0419 -0.7237 1.2486 5 6 3.5720 -0.7710 1.2101 6 6 4.0237 -1.4717 -0.0733 7 7 3.5092 -0.7410 -1.2385 8 6 4.0371 -1.3044 -2.4883 9 6 5.5494 -1.0805 -2.5499 10 7 6.0758 -1.6418 -3.7964 11 6 7.3933 -1.5612 -4.0684 12 8 8.1451 -1.0222 -3.2793 13 7 7.8777 -2.0781 -5.2151 14 6 9.3100 -1.9910 -5.5103 15 6 9.7030 -3.1194 -6.4665 16 6 11.2074 -3.0459 -6.7457 17 7 11.5324 -1.6994 -7.2354 18 6 12.2129 -1.5301 -8.4117 19 1 12.0683 -0.6326 -8.9949 20 6 13.0884 -2.5120 -8.8545 21 7 13.5222 -3.4322 -8.0193 22 14 13.6511 -2.5274 -10.6356 23 1 14.8864 -1.7145 -10.7716 24 1 13.9294 -3.9246 -11.0548 25 1 12.5849 -1.9554 -11.4966 26 6 11.1187 -0.5380 -6.4362 27 6 9.6152 -0.6395 -6.1605 28 6 2.0409 -0.7231 -1.2482 29 1 -0.3634 -1.0276 0.0015 30 1 -0.3633 0.5151 0.8892 31 1 -0.3633 0.5126 -0.8906 32 1 1.7164 -0.1871 2.1397 33 1 1.6466 -1.7392 1.2688 34 1 3.9680 0.2443 1.2291 35 1 3.9409 -1.3218 2.0753 36 1 3.6388 -2.4913 -0.0850 37 1 5.1128 -1.4943 -0.1106 38 1 3.5622 -0.8130 -3.3374 39 1 3.8264 -2.3732 -2.5225 40 1 6.0244 -1.5719 -1.7007 41 1 5.7602 -0.0116 -2.5156 42 1 5.4760 -2.0716 -4.4262 43 1 7.2781 -2.5085 -5.8444 44 1 9.8778 -2.0851 -4.5847 45 1 9.1538 -3.0115 -7.4018 46 1 9.4636 -4.0812 -6.0130 47 1 11.4753 -3.7842 -7.5017 48 1 11.7597 -3.2438 -5.8269 49 1 14.1343 -4.1181 -8.3286 50 1 11.6637 -0.5313 -5.4923 51 1 11.3280 0.3785 -6.9878 52 1 9.0668 -0.5551 -7.0986 53 1 9.3134 0.1638 -5.4885 54 1 1.6899 -0.2021 -2.1390 55 1 1.6653 -1.7463 -1.2543 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609340838.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:43 Heat of formation + Delta-G solvation = -43.741227 kcal Electronic energy + Delta-G solvation = -29517.742361 eV Core-core repulsion = 25588.320665 eV Total energy + Delta-G solvation = -3929.421696 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.22036 -40.20199 -39.10071 -36.71162 -35.89910 -34.78731 -33.81425 -32.83565 -31.80734 -31.22654 -29.49021 -27.42030 -26.85061 -25.10716 -23.94329 -23.62697 -23.42085 -21.95404 -21.78515 -21.03977 -20.57347 -19.37694 -18.57765 -17.62229 -16.91435 -16.80457 -16.61235 -16.24261 -15.80040 -15.67935 -15.35894 -15.30656 -15.20830 -15.11127 -14.85010 -14.76773 -14.61509 -14.17503 -14.03684 -13.71883 -13.38995 -13.19941 -13.06396 -12.99344 -12.72278 -12.60298 -12.56300 -12.50170 -12.27121 -12.19870 -12.00855 -11.92459 -11.86084 -11.55700 -11.51403 -11.41359 -11.26801 -11.17396 -11.12132 -10.54912 -10.29936 -9.72136 -9.32295 -8.69561 -7.86845 -5.32625 1.49156 1.50228 1.60413 1.65038 2.18745 2.53055 2.86135 3.28614 3.43537 3.68007 3.76207 3.82432 3.91884 3.92858 4.00801 4.08194 4.14193 4.23921 4.35970 4.42300 4.46279 4.47899 4.52955 4.64413 4.66555 4.71733 4.77720 4.81637 4.83479 4.86462 4.90420 4.95898 4.96437 5.00554 5.05521 5.08337 5.14433 5.17427 5.23638 5.30931 5.32757 5.37184 5.46789 5.49314 5.54493 5.61688 5.65755 5.71273 6.04828 6.07736 6.13223 6.40069 7.15403 7.15599 7.63021 7.84894 8.38239 9.20314 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.040262 B = 0.001581 C = 0.001568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.274414 B =17710.382548 C =17857.741594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.089 4.089 3 H 0.069 0.931 4 C -0.114 4.114 5 C -0.117 4.117 6 C 0.049 3.951 7 N -0.547 5.547 8 C 0.057 3.943 9 C 0.147 3.853 10 N -0.731 5.731 11 C 0.700 3.300 12 O -0.638 6.638 13 N -0.725 5.725 14 C 0.181 3.819 15 C -0.127 4.127 16 C 0.179 3.821 17 N -0.608 5.608 18 C -0.265 4.265 19 H 0.067 0.933 20 C -0.049 4.049 21 N -0.936 5.936 22 Si 0.969 3.031 23 H -0.287 1.287 24 H -0.291 1.291 25 H -0.269 1.269 26 C 0.144 3.856 27 C -0.123 4.123 28 C 0.064 3.936 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.070 0.930 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.074 0.926 36 H 0.036 0.964 37 H 0.068 0.932 38 H 0.095 0.905 39 H 0.051 0.949 40 H 0.051 0.949 41 H 0.054 0.946 42 H 0.412 0.588 43 H 0.410 0.590 44 H 0.054 0.946 45 H 0.072 0.928 46 H 0.076 0.924 47 H 0.064 0.936 48 H -0.007 1.007 49 H 0.251 0.749 50 H 0.006 0.994 51 H 0.057 0.943 52 H 0.067 0.933 53 H 0.056 0.944 54 H 0.081 0.919 55 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.227 2.036 14.335 33.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.108 4.108 3 H 0.087 0.913 4 C -0.151 4.151 5 C -0.155 4.155 6 C -0.078 4.078 7 N -0.272 5.272 8 C -0.071 4.071 9 C 0.022 3.978 10 N -0.389 5.389 11 C 0.399 3.601 12 O -0.519 6.519 13 N -0.380 5.380 14 C 0.076 3.924 15 C -0.166 4.166 16 C 0.052 3.948 17 N -0.332 5.332 18 C -0.395 4.395 19 H 0.085 0.915 20 C -0.244 4.244 21 N -0.582 5.582 22 Si 0.797 3.203 23 H -0.214 1.214 24 H -0.217 1.217 25 H -0.194 1.194 26 C 0.018 3.982 27 C -0.163 4.163 28 C -0.064 4.064 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.093 0.907 36 H 0.054 0.946 37 H 0.087 0.913 38 H 0.113 0.887 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.072 0.928 42 H 0.249 0.751 43 H 0.247 0.753 44 H 0.072 0.928 45 H 0.090 0.910 46 H 0.095 0.905 47 H 0.082 0.918 48 H 0.012 0.988 49 H 0.060 0.940 50 H 0.023 0.977 51 H 0.076 0.924 52 H 0.085 0.915 53 H 0.075 0.925 54 H 0.099 0.901 55 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -29.299 2.885 15.058 33.069 hybrid contribution 0.311 -1.256 -1.238 1.791 sum -28.988 1.629 13.821 32.156 Atomic orbital electron populations 1.21760 0.93861 1.02089 1.02328 1.21162 0.95912 0.99745 0.94010 0.91281 1.21642 0.94916 1.00617 0.97973 1.21583 0.96388 1.01169 0.96374 1.22196 0.99878 0.95111 0.90654 1.61742 1.09036 1.54591 1.01818 1.22107 0.92766 0.98896 0.93367 1.21025 0.93647 0.98241 0.84846 1.44795 1.05910 1.64018 1.24128 1.16125 0.82777 0.79172 0.81984 1.90905 1.58650 1.51609 1.50742 1.45105 1.09346 1.62641 1.20916 1.20483 0.79555 0.95273 0.97128 1.22250 0.98287 0.97328 0.98772 1.20571 0.90427 0.87383 0.96377 1.44351 1.64781 1.01163 1.22867 1.19525 1.17567 1.05307 0.97095 0.91496 1.25820 0.97167 0.99478 1.01971 1.70186 1.34781 1.18524 1.34670 0.85256 0.78104 0.76545 0.80377 1.21390 1.21737 1.19351 1.20970 0.92939 0.90789 0.93523 1.22177 0.97163 0.96973 1.00025 1.22174 0.85675 0.99301 0.99236 0.92493 0.92036 0.92177 0.91176 0.92023 0.91941 0.90741 0.94560 0.91329 0.88708 0.93096 0.93059 0.92765 0.75119 0.75331 0.92824 0.90978 0.90499 0.91777 0.98842 0.94014 0.97651 0.92414 0.91467 0.92524 0.90095 0.94524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 9.20 71.98 0.66 -0.41 16 2 C -0.09 -0.92 2.88 -10.74 -0.03 -0.95 16 3 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 4 C -0.11 -1.16 5.29 30.68 0.16 -0.99 16 5 C -0.12 -1.46 6.09 30.65 0.19 -1.27 16 6 C 0.05 0.70 5.29 86.33 0.46 1.16 16 7 N -0.55 -7.71 4.66 -896.39 -4.17 -11.88 16 8 C 0.06 0.73 5.07 86.30 0.44 1.16 16 9 C 0.15 2.85 5.60 86.38 0.48 3.34 16 10 N -0.73 -14.30 5.56 -478.54 -2.66 -16.96 16 11 C 0.70 20.51 8.53 179.05 1.53 22.03 16 12 O -0.64 -25.39 16.01 -3.99 -0.06 -25.45 16 13 N -0.73 -19.33 5.08 -457.67 -2.33 -21.65 16 14 C 0.18 6.31 2.42 45.02 0.11 6.42 16 15 C -0.13 -4.52 5.55 30.67 0.17 -4.35 16 16 C 0.18 8.61 5.29 86.36 0.46 9.06 16 17 N -0.61 -31.06 2.99 -699.09 -2.09 -33.15 16 18 C -0.26 -14.65 9.58 84.03 0.81 -13.85 16 19 H 0.07 3.60 7.89 -2.91 -0.02 3.58 16 20 C -0.05 -2.73 4.92 84.86 0.42 -2.32 16 21 N -0.94 -55.37 11.20 21.65 0.24 -55.13 16 22 Si 0.97 44.57 29.59 68.60 2.03 46.60 16 23 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 24 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 25 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 26 C 0.14 6.40 6.51 86.36 0.56 6.97 16 27 C -0.12 -4.54 5.65 30.67 0.17 -4.36 16 28 C 0.06 0.70 4.74 86.32 0.41 1.11 16 29 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.06 0.41 8.14 -2.39 -0.02 0.40 16 32 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.04 0.49 8.14 -2.39 -0.02 0.47 16 37 H 0.07 1.14 6.21 -2.39 -0.01 1.13 16 38 H 0.09 0.98 7.99 -2.39 -0.02 0.96 16 39 H 0.05 0.56 8.12 -2.39 -0.02 0.54 16 40 H 0.05 1.15 6.43 -2.39 -0.02 1.14 16 41 H 0.05 1.29 8.14 -2.38 -0.02 1.27 16 42 H 0.41 4.95 8.49 -92.70 -0.79 4.16 16 43 H 0.41 7.86 8.62 -92.71 -0.80 7.07 16 44 H 0.05 2.21 7.58 -2.39 -0.02 2.19 16 45 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 46 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 47 H 0.06 3.43 6.07 -2.39 -0.01 3.42 16 48 H -0.01 -0.34 8.14 -2.38 -0.02 -0.36 16 49 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 50 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 51 H 0.06 2.49 7.93 -2.39 -0.02 2.47 16 52 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 53 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 54 H 0.08 0.80 8.02 -2.39 -0.02 0.78 16 55 H 0.04 0.39 8.14 -2.38 -0.02 0.37 16 Total: -1.00 -71.14 419.09 -2.78 -73.92 By element: Atomic # 1 Polarization: 21.68 SS G_CDS: -0.73 Total: 20.95 kcal Atomic # 6 Polarization: 15.77 SS G_CDS: 6.99 Total: 22.76 kcal Atomic # 7 Polarization: -127.77 SS G_CDS: -11.01 Total: -138.78 kcal Atomic # 8 Polarization: -25.39 SS G_CDS: -0.06 Total: -25.45 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -71.14 -2.78 -73.92 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609340838.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.180 kcal (2) G-P(sol) polarization free energy of solvation -71.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds