Wall clock time and date at job start Tue Mar 31 2020 22:16:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46903 * 109.46919 * 2 1 4 4 C 1.46846 * 110.99879 * 294.20552 * 3 2 1 5 5 C 1.53036 * 109.52277 * 174.15891 * 4 3 2 6 6 C 1.53117 * 109.27774 * 59.18265 * 5 4 3 7 7 C 1.53004 * 109.57640 * 182.40777 * 6 5 4 8 8 N 1.46504 * 109.47192 * 294.71661 * 7 6 5 9 9 C 1.34774 * 119.99943 * 179.97438 * 8 7 6 10 10 O 1.21585 * 120.00150 * 0.02562 * 9 8 7 11 11 N 1.34775 * 119.99687 * 179.97438 * 9 8 7 12 12 C 1.46508 * 119.99839 * 180.02562 * 11 9 8 13 13 C 1.53040 * 109.45668 * 275.03071 * 12 11 9 14 14 C 1.53192 * 109.30990 * 178.60065 * 13 12 11 15 15 N 1.46928 * 108.76816 * 54.65466 * 14 13 12 16 16 C 1.36938 * 120.63115 * 126.40353 * 15 14 13 17 17 H 1.07998 * 120.00064 * 331.83038 * 16 15 14 18 18 C 1.38807 * 119.99659 * 151.83164 * 16 15 14 19 19 N 1.31621 * 120.00235 * 343.06813 * 18 16 15 20 20 Si 1.86807 * 119.99864 * 163.06972 * 18 16 15 21 21 H 1.48503 * 109.46836 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.47176 * 119.99890 * 20 18 16 23 23 H 1.48500 * 109.47070 * 239.99768 * 20 18 16 24 24 C 1.46927 * 118.73769 * 306.38634 * 15 14 13 25 25 C 1.53039 * 109.46159 * 154.97640 * 12 11 9 26 26 C 1.53114 * 109.16166 * 302.34515 * 6 5 4 27 27 C 1.46848 * 111.00087 * 170.00123 * 3 2 1 28 28 H 1.09006 * 109.46995 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47866 * 300.00065 * 1 2 3 30 30 H 1.09004 * 109.46806 * 60.00804 * 1 2 3 31 31 H 1.08999 * 109.47307 * 240.00289 * 2 1 3 32 32 H 1.08998 * 109.47179 * 119.99810 * 2 1 3 33 33 H 1.08998 * 109.46431 * 294.18054 * 4 3 2 34 34 H 1.09003 * 109.46402 * 54.14801 * 4 3 2 35 35 H 1.08998 * 109.50903 * 299.23834 * 5 4 3 36 36 H 1.09001 * 109.50411 * 179.12521 * 5 4 3 37 37 H 1.09005 * 109.52316 * 62.25145 * 6 5 4 38 38 H 1.09001 * 109.47272 * 54.71297 * 7 6 5 39 39 H 1.08996 * 109.47285 * 174.71206 * 7 6 5 40 40 H 0.96998 * 119.99820 * 359.97438 * 8 7 6 41 41 H 0.96993 * 120.00436 * 0.02562 * 11 9 8 42 42 H 1.09000 * 109.45939 * 35.00127 * 12 11 9 43 43 H 1.09000 * 109.49879 * 298.56238 * 13 12 11 44 44 H 1.08997 * 109.49916 * 58.66179 * 13 12 11 45 45 H 1.09000 * 109.59854 * 294.86704 * 14 13 12 46 46 H 1.09000 * 109.70573 * 174.50487 * 14 13 12 47 47 H 0.97002 * 119.99804 * 179.97438 * 19 18 16 48 48 H 1.09000 * 109.58336 * 293.81762 * 24 15 14 49 49 H 1.08996 * 109.70257 * 173.46276 * 24 15 14 50 50 H 1.09001 * 109.49659 * 301.34009 * 25 12 11 51 51 H 1.08997 * 109.49456 * 61.39741 * 25 12 11 52 52 H 1.09003 * 109.50571 * 297.71551 * 26 6 5 53 53 H 1.08995 * 109.53678 * 177.61631 * 26 6 5 54 54 H 1.09000 * 109.45868 * 305.85406 * 27 3 2 55 55 H 1.08995 * 109.46466 * 65.83123 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6650 2.0685 -1.2504 5 6 2.0605 3.5439 -1.1567 6 6 3.5674 3.6483 -0.9057 7 6 3.9607 5.1189 -0.7511 8 7 3.7363 5.8201 -2.0177 9 6 4.0141 7.1351 -2.1182 10 8 4.4512 7.7393 -1.1580 11 7 3.8082 7.7801 -3.2836 12 6 4.1106 9.2094 -3.3931 13 6 2.9124 10.0233 -2.8990 14 6 3.2453 11.5163 -2.9821 15 7 3.6638 11.8316 -4.3548 16 6 3.0550 12.8380 -5.0561 17 1 2.0290 13.1000 -4.8439 18 6 3.7567 13.5212 -6.0398 19 7 5.0703 13.4497 -6.0812 20 14 2.8365 14.5423 -7.3048 21 1 1.3773 14.4583 -7.0421 22 1 3.2759 15.9578 -7.2129 23 1 3.1248 14.0219 -8.6655 24 6 4.7483 11.0469 -4.9605 25 6 4.3987 9.5591 -4.8549 26 6 3.9173 2.8876 0.3762 27 6 3.4679 1.4312 0.2380 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.1942 1.6026 -2.0817 34 1 0.5903 1.9904 -1.4149 35 1 1.5212 4.0138 -0.3343 36 1 1.8114 4.0475 -2.0908 37 1 4.1077 3.2133 -1.7465 38 1 3.3541 5.5770 0.0301 39 1 5.0141 5.1867 -0.4799 40 1 3.3880 5.3380 -2.7839 41 1 3.4598 7.2981 -4.0498 42 1 4.9842 9.4434 -2.7847 43 1 2.0447 9.8086 -3.5226 44 1 2.6930 9.7567 -1.8652 45 1 4.0549 11.7495 -2.2906 46 1 2.3642 12.1042 -2.7247 47 1 5.5605 13.9270 -6.7688 48 1 5.6805 11.2418 -4.4303 49 1 4.8598 11.3225 -6.0091 50 1 5.2372 8.9620 -5.2133 51 1 3.5170 9.3482 -5.4599 52 1 3.4072 3.3471 1.2228 53 1 4.9946 2.9222 0.5380 54 1 3.7027 0.8902 1.1547 55 1 3.9887 0.9686 -0.6002 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609341240.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:23 Heat of formation + Delta-G solvation = -43.317390 kcal Electronic energy + Delta-G solvation = -29783.890218 eV Core-core repulsion = 25854.486901 eV Total energy + Delta-G solvation = -3929.403317 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.25338 -40.18338 -39.07136 -36.87798 -35.90349 -34.55470 -33.73840 -31.92133 -31.74801 -31.33330 -30.67640 -27.66489 -26.60658 -24.45910 -24.08694 -23.80482 -23.16110 -22.05340 -21.77471 -21.05084 -20.66316 -19.34750 -18.59726 -17.46945 -17.01155 -16.80735 -16.58055 -16.10731 -15.89633 -15.61314 -15.43612 -15.34156 -15.30910 -15.08705 -14.76023 -14.66646 -14.29783 -14.22568 -13.99763 -13.90094 -13.42709 -13.19218 -13.05204 -13.00661 -12.62236 -12.60896 -12.52382 -12.50002 -12.21170 -12.10905 -11.99171 -11.94715 -11.85896 -11.62381 -11.54446 -11.44924 -11.34574 -11.14723 -11.13166 -10.55954 -10.27856 -9.69674 -9.23207 -8.70058 -7.87050 -5.32815 1.48097 1.50024 1.60921 1.74522 2.21426 2.52610 2.97466 3.26418 3.35313 3.67692 3.69125 3.78570 3.88081 3.92245 4.08482 4.14677 4.29604 4.33163 4.36251 4.38366 4.47734 4.50331 4.60009 4.60325 4.64692 4.66534 4.74319 4.82280 4.84132 4.88018 4.89609 4.92114 4.99192 5.02792 5.06998 5.08387 5.14356 5.17455 5.20777 5.25601 5.30957 5.37418 5.45015 5.48239 5.57127 5.63178 5.65840 5.71482 6.07942 6.19755 6.20301 6.39879 7.15264 7.17306 7.65490 7.84629 8.37927 9.20224 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.027956 B = 0.001722 C = 0.001677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.345173 B =16251.925509 C =16696.601926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.050 3.950 3 N -0.553 5.553 4 C 0.055 3.945 5 C -0.109 4.109 6 C -0.087 4.087 7 C 0.148 3.852 8 N -0.730 5.730 9 C 0.698 3.302 10 O -0.639 6.639 11 N -0.727 5.727 12 C 0.181 3.819 13 C -0.123 4.123 14 C 0.144 3.856 15 N -0.608 5.608 16 C -0.262 4.262 17 H 0.068 0.932 18 C -0.050 4.050 19 N -0.936 5.936 20 Si 0.969 3.031 21 H -0.266 1.266 22 H -0.294 1.294 23 H -0.287 1.287 24 C 0.178 3.822 25 C -0.127 4.127 26 C -0.107 4.107 27 C 0.059 3.941 28 H 0.068 0.932 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.033 0.967 32 H 0.077 0.923 33 H 0.036 0.964 34 H 0.080 0.920 35 H 0.060 0.940 36 H 0.075 0.925 37 H 0.084 0.916 38 H 0.051 0.949 39 H 0.054 0.946 40 H 0.410 0.590 41 H 0.409 0.591 42 H 0.053 0.947 43 H 0.066 0.934 44 H 0.056 0.944 45 H 0.006 0.994 46 H 0.057 0.943 47 H 0.251 0.749 48 H -0.006 1.006 49 H 0.064 0.936 50 H 0.076 0.924 51 H 0.071 0.929 52 H 0.066 0.934 53 H 0.078 0.922 54 H 0.081 0.919 55 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.505 -31.262 8.630 33.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.078 4.078 3 N -0.278 5.278 4 C -0.072 4.072 5 C -0.146 4.146 6 C -0.106 4.106 7 C 0.024 3.976 8 N -0.387 5.387 9 C 0.398 3.602 10 O -0.521 6.521 11 N -0.381 5.381 12 C 0.076 3.924 13 C -0.163 4.163 14 C 0.018 3.982 15 N -0.332 5.332 16 C -0.392 4.392 17 H 0.085 0.915 18 C -0.245 4.245 19 N -0.582 5.582 20 Si 0.797 3.203 21 H -0.191 1.191 22 H -0.222 1.222 23 H -0.214 1.214 24 C 0.052 3.948 25 C -0.166 4.166 26 C -0.146 4.146 27 C -0.069 4.069 28 H 0.087 0.913 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.052 0.948 32 H 0.096 0.904 33 H 0.054 0.946 34 H 0.098 0.902 35 H 0.079 0.921 36 H 0.094 0.906 37 H 0.102 0.898 38 H 0.069 0.931 39 H 0.073 0.927 40 H 0.247 0.753 41 H 0.246 0.754 42 H 0.072 0.928 43 H 0.085 0.915 44 H 0.075 0.925 45 H 0.024 0.976 46 H 0.076 0.924 47 H 0.060 0.940 48 H 0.012 0.988 49 H 0.082 0.918 50 H 0.095 0.905 51 H 0.090 0.910 52 H 0.085 0.915 53 H 0.097 0.903 54 H 0.100 0.900 55 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -6.251 -30.410 9.794 32.554 hybrid contribution 0.098 0.251 -1.774 1.794 sum -6.152 -30.159 8.020 31.808 Atomic orbital electron populations 1.21788 0.94517 1.02098 1.02072 1.22091 0.96447 0.88284 1.00949 1.61984 1.14237 1.16140 1.35486 1.22120 1.01186 0.94081 0.89862 1.21623 0.94815 0.95856 1.02349 1.21355 0.96945 0.92641 0.99629 1.21199 1.00375 0.91453 0.84577 1.44960 1.70714 1.07076 1.15976 1.16181 0.78520 0.82269 0.83240 1.90898 1.54022 1.67981 1.39151 1.45117 1.70254 1.10109 1.12649 1.20471 0.96766 0.78453 0.96724 1.22174 0.98227 0.95700 1.00210 1.20968 0.97225 0.94073 0.85929 1.44351 1.41166 1.36991 1.10678 1.19559 0.94411 1.10240 1.15029 0.91476 1.25822 0.95824 0.99612 1.03283 1.70196 1.06365 1.46368 1.35259 0.85184 0.78576 0.77627 0.78893 1.19077 1.22163 1.21393 1.20566 0.88359 0.87550 0.98316 1.22248 1.02014 0.97932 0.94452 1.21539 1.01476 0.94579 0.96980 1.22059 0.87040 0.96717 1.01057 0.91286 0.92634 0.92761 0.94849 0.90418 0.94620 0.90204 0.92071 0.90597 0.89756 0.93090 0.92725 0.75347 0.75437 0.92831 0.91508 0.92524 0.97619 0.92420 0.94029 0.98825 0.91784 0.90544 0.91025 0.91524 0.90296 0.90048 0.94606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.84 71.98 0.71 -0.61 16 2 C 0.05 0.49 5.68 86.30 0.49 0.98 16 3 N -0.55 -6.64 4.66 -896.37 -4.17 -10.81 16 4 C 0.06 0.61 5.29 86.33 0.46 1.06 16 5 C -0.11 -1.27 5.23 30.65 0.16 -1.11 16 6 C -0.09 -1.03 2.29 -10.72 -0.02 -1.05 16 7 C 0.15 2.69 5.07 86.38 0.44 3.13 16 8 N -0.73 -14.07 5.32 -478.53 -2.54 -16.61 16 9 C 0.70 20.27 8.53 179.06 1.53 21.80 16 10 O -0.64 -25.17 16.01 -3.98 -0.06 -25.24 16 11 N -0.73 -19.35 5.08 -457.68 -2.33 -21.67 16 12 C 0.18 6.31 2.42 45.02 0.11 6.42 16 13 C -0.12 -4.52 5.65 30.67 0.17 -4.34 16 14 C 0.14 6.40 6.52 86.36 0.56 6.96 16 15 N -0.61 -31.04 2.99 -699.10 -2.09 -33.14 16 16 C -0.26 -14.49 9.58 84.03 0.81 -13.69 16 17 H 0.07 3.62 7.88 -2.91 -0.02 3.60 16 18 C -0.05 -2.80 4.92 84.86 0.42 -2.38 16 19 N -0.94 -55.42 11.19 21.65 0.24 -55.18 16 20 Si 0.97 44.63 29.59 68.60 2.03 46.66 16 21 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 22 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 23 H -0.29 -13.04 7.11 99.48 0.71 -12.34 16 24 C 0.18 8.59 5.30 86.36 0.46 9.05 16 25 C -0.13 -4.53 5.55 30.67 0.17 -4.36 16 26 C -0.11 -1.23 5.38 30.64 0.16 -1.06 16 27 C 0.06 0.62 5.46 86.33 0.47 1.09 16 28 H 0.07 0.46 8.14 -2.38 -0.02 0.45 16 29 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.05 0.50 6.43 -2.39 -0.02 0.48 16 31 H 0.03 0.31 8.12 -2.39 -0.02 0.29 16 32 H 0.08 0.69 7.99 -2.39 -0.02 0.67 16 33 H 0.04 0.37 8.14 -2.39 -0.02 0.35 16 34 H 0.08 0.86 6.21 -2.39 -0.01 0.84 16 35 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.08 0.76 7.28 -2.39 -0.02 0.74 16 37 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 38 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.41 5.13 7.71 -92.71 -0.71 4.42 16 41 H 0.41 7.92 8.62 -92.71 -0.80 7.12 16 42 H 0.05 2.20 7.58 -2.39 -0.02 2.18 16 43 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 44 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 45 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 46 H 0.06 2.48 7.93 -2.39 -0.02 2.46 16 47 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 48 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 49 H 0.06 3.43 6.07 -2.39 -0.01 3.42 16 50 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 51 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 52 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 53 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 54 H 0.08 0.77 8.02 -2.39 -0.02 0.75 16 55 H 0.04 0.36 8.14 -2.39 -0.02 0.34 16 Total: -1.00 -70.97 417.25 -2.49 -73.46 By element: Atomic # 1 Polarization: 21.29 SS G_CDS: -0.65 Total: 20.63 kcal Atomic # 6 Polarization: 14.81 SS G_CDS: 7.09 Total: 21.90 kcal Atomic # 7 Polarization: -126.52 SS G_CDS: -10.89 Total: -137.41 kcal Atomic # 8 Polarization: -25.17 SS G_CDS: -0.06 Total: -25.24 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -70.97 -2.49 -73.46 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609341240.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.147 kcal (2) G-P(sol) polarization free energy of solvation -70.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds