Wall clock time and date at job start Tue Mar 31 2020 22:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47163 * 2 1 4 4 C 1.53001 * 109.46893 * 240.00799 * 2 1 3 5 5 N 1.46909 * 109.47237 * 184.99529 * 4 2 1 6 6 C 1.46845 * 111.00194 * 294.21290 * 5 4 2 7 7 C 1.53029 * 109.52472 * 174.15790 * 6 5 4 8 8 C 1.53115 * 109.27798 * 59.17621 * 7 6 5 9 9 C 1.53113 * 109.16302 * 302.34542 * 8 7 6 10 10 C 1.46839 * 111.00106 * 169.99740 * 5 4 2 11 11 N 1.46500 * 109.47689 * 120.00703 * 2 1 3 12 12 C 1.34774 * 119.99801 * 275.00420 * 11 2 1 13 13 O 1.21592 * 120.00145 * 359.97438 * 12 11 2 14 14 N 1.34771 * 119.99801 * 179.97438 * 12 11 2 15 15 C 1.46500 * 120.00217 * 179.97438 * 14 12 11 16 16 C 1.53349 * 109.42211 * 275.13086 * 15 14 12 17 17 C 1.53193 * 109.14947 * 178.67019 * 16 15 14 18 18 N 1.46932 * 108.89365 * 54.58000 * 17 16 15 19 19 C 1.36929 * 120.62923 * 126.33970 * 18 17 16 20 20 H 1.07994 * 120.00472 * 332.28422 * 19 18 17 21 21 C 1.38823 * 119.99710 * 152.28799 * 19 18 17 22 22 N 1.31617 * 119.99601 * 342.59309 * 21 19 18 23 23 Si 1.86793 * 119.99892 * 162.59877 * 21 19 18 24 24 H 1.48502 * 109.47323 * 94.34576 * 23 21 19 25 25 H 1.48497 * 109.47157 * 214.34797 * 23 21 19 26 26 H 1.48496 * 109.47300 * 334.34614 * 23 21 19 27 27 C 1.46927 * 118.73576 * 306.31982 * 18 17 16 28 28 C 1.53038 * 109.46224 * 154.99689 * 15 14 12 29 29 H 1.08998 * 109.47380 * 59.99160 * 1 2 3 30 30 H 1.08998 * 109.46773 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46737 * 299.99442 * 1 2 3 32 32 H 1.08997 * 109.47564 * 304.99596 * 4 2 1 33 33 H 1.09003 * 109.47366 * 64.99834 * 4 2 1 34 34 H 1.09000 * 109.46195 * 294.17584 * 6 5 4 35 35 H 1.09002 * 109.46035 * 54.13864 * 6 5 4 36 36 H 1.08998 * 109.50546 * 299.23726 * 7 6 5 37 37 H 1.08999 * 109.53437 * 179.13845 * 7 6 5 38 38 H 1.09010 * 109.52221 * 182.44067 * 8 7 6 39 39 H 1.08999 * 109.57426 * 62.28836 * 8 7 6 40 40 H 1.09001 * 109.50651 * 297.71539 * 9 8 7 41 41 H 1.09004 * 109.50673 * 177.59350 * 9 8 7 42 42 H 1.08997 * 109.46533 * 305.86192 * 10 5 4 43 43 H 1.09005 * 109.46200 * 65.82346 * 10 5 4 44 44 H 0.96992 * 119.99915 * 94.99658 * 11 2 1 45 45 H 0.97001 * 120.00126 * 359.97438 * 14 12 11 46 46 H 1.09005 * 109.45754 * 35.03170 * 15 14 12 47 47 H 1.08996 * 109.68615 * 58.70782 * 16 15 14 48 48 H 1.08996 * 109.47201 * 298.50889 * 16 15 14 49 49 H 1.08995 * 109.58815 * 294.71872 * 17 16 15 50 50 H 1.09000 * 109.58606 * 174.43227 * 17 16 15 51 51 H 0.97000 * 119.99465 * 180.02562 * 22 21 19 52 52 H 1.08997 * 109.58712 * 173.40018 * 27 18 17 53 53 H 1.09003 * 109.58223 * 293.67509 * 27 18 17 54 54 H 1.09002 * 109.49898 * 61.44070 * 28 15 14 55 55 H 1.09001 * 109.50239 * 301.34157 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 7 3.5041 -0.8265 -1.1907 6 6 4.1306 0.4995 -1.2659 7 6 5.6404 0.3644 -1.0562 8 6 6.2200 -0.5565 -2.1334 9 6 5.5169 -1.9149 -2.0649 10 6 4.0105 -1.7137 -2.2454 11 7 2.0185 -0.6907 1.1960 12 6 2.1472 -0.0185 2.3571 13 8 1.8583 1.1613 2.4117 14 7 2.5960 -0.6541 3.4575 15 6 2.7365 0.0767 4.7194 16 6 4.0959 0.7857 4.7495 17 6 4.2224 1.5745 6.0566 18 7 3.9897 0.6641 7.1862 19 6 4.9055 0.5607 8.1989 20 1 5.9492 0.7600 8.0057 21 6 4.4923 0.1996 9.4741 22 7 3.2212 0.2885 9.8037 23 14 5.7403 -0.4123 10.7219 24 1 6.1986 0.7235 11.5616 25 1 5.1119 -1.4442 11.5854 26 1 6.9026 -1.0028 10.0109 27 6 2.7555 -0.1328 7.2085 28 6 2.6430 -0.9046 5.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.6054 -1.7196 -1.2954 33 1 1.7516 -0.1581 -2.1371 34 1 3.9377 0.9372 -2.2454 35 1 3.7125 1.1431 -0.4920 36 1 5.8345 -0.0605 -0.0714 37 1 6.1076 1.3466 -1.1272 38 1 7.2883 -0.6902 -1.9621 39 1 6.0616 -0.1134 -3.1166 40 1 5.7089 -2.3757 -1.0959 41 1 5.8952 -2.5610 -2.8571 42 1 3.5053 -2.6775 -2.1829 43 1 3.8182 -1.2657 -3.2203 44 1 2.2491 -1.6318 1.1523 45 1 2.8261 -1.5954 3.4140 46 1 1.9400 0.8164 4.8013 47 1 4.1725 1.4688 3.9036 48 1 4.8934 0.0449 4.6930 49 1 3.4824 2.3746 6.0737 50 1 5.2229 2.0006 6.1309 51 1 2.9325 0.0365 10.6949 52 1 2.7891 -0.8351 8.0414 53 1 1.8961 0.5279 7.3221 54 1 3.4542 -1.6297 5.8226 55 1 1.6857 -1.4246 5.8534 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609341626.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:58 Heat of formation + Delta-G solvation = -41.016200 kcal Electronic energy + Delta-G solvation = -30925.329061 eV Core-core repulsion = 26996.025531 eV Total energy + Delta-G solvation = -3929.303530 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.22577 -40.00832 -39.04026 -36.92292 -35.81358 -34.19621 -33.67906 -32.08417 -31.71802 -31.50919 -30.49044 -27.31965 -26.83752 -24.48881 -24.00313 -23.83296 -23.60897 -22.03323 -21.39990 -21.00528 -20.56053 -19.36365 -18.56092 -17.48623 -17.09695 -16.81996 -16.38834 -15.99367 -15.77950 -15.48742 -15.45006 -15.33007 -15.15049 -14.97508 -14.72815 -14.54882 -14.34764 -14.23068 -14.03789 -13.68444 -13.42957 -13.20888 -13.11431 -12.99390 -12.77669 -12.64147 -12.59168 -12.49386 -12.21059 -12.11364 -12.00880 -11.95160 -11.85424 -11.61330 -11.52133 -11.33879 -11.24919 -11.11430 -11.10222 -10.54595 -10.16697 -9.60653 -9.23588 -8.70413 -7.86946 -5.31890 1.48844 1.50020 1.60758 1.83674 2.33189 2.53084 2.89849 3.27986 3.44512 3.68326 3.75570 3.90082 3.93618 3.98578 4.08235 4.09684 4.24154 4.32636 4.37222 4.38525 4.48285 4.48529 4.56844 4.65094 4.66663 4.71439 4.75053 4.79492 4.84037 4.84594 4.87817 4.95324 5.01690 5.06053 5.08577 5.09020 5.12498 5.17978 5.24331 5.30187 5.31702 5.33826 5.48511 5.48697 5.65324 5.68784 5.71935 5.73364 6.14268 6.18786 6.21239 6.39836 7.15249 7.28906 7.77397 7.84884 8.38240 9.20451 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.015822 B = 0.002440 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.277915 B =11473.533223 C =12517.106996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.165 3.835 3 H 0.057 0.943 4 C 0.055 3.945 5 N -0.541 5.541 6 C 0.059 3.941 7 C -0.116 4.116 8 C -0.118 4.118 9 C -0.115 4.115 10 C 0.057 3.943 11 N -0.711 5.711 12 C 0.701 3.299 13 O -0.642 6.642 14 N -0.729 5.729 15 C 0.184 3.816 16 C -0.120 4.120 17 C 0.145 3.855 18 N -0.608 5.608 19 C -0.264 4.264 20 H 0.067 0.933 21 C -0.050 4.050 22 N -0.936 5.936 23 Si 0.970 3.030 24 H -0.288 1.288 25 H -0.290 1.290 26 H -0.268 1.268 27 C 0.179 3.821 28 C -0.126 4.126 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.034 0.966 32 H 0.101 0.899 33 H 0.058 0.942 34 H 0.036 0.964 35 H 0.054 0.946 36 H 0.053 0.947 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.061 0.939 41 H 0.079 0.921 42 H 0.087 0.913 43 H 0.035 0.965 44 H 0.409 0.591 45 H 0.407 0.593 46 H 0.052 0.948 47 H 0.055 0.945 48 H 0.063 0.937 49 H 0.005 0.995 50 H 0.056 0.944 51 H 0.251 0.749 52 H 0.064 0.936 53 H -0.007 1.007 54 H 0.069 0.931 55 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.581 -8.491 -29.382 30.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.059 3.941 3 H 0.075 0.925 4 C -0.073 4.073 5 N -0.266 5.266 6 C -0.069 4.069 7 C -0.154 4.154 8 C -0.156 4.156 9 C -0.153 4.153 10 C -0.070 4.070 11 N -0.367 5.367 12 C 0.401 3.599 13 O -0.524 6.524 14 N -0.383 5.383 15 C 0.078 3.922 16 C -0.161 4.161 17 C 0.019 3.981 18 N -0.332 5.332 19 C -0.394 4.394 20 H 0.085 0.915 21 C -0.246 4.246 22 N -0.582 5.582 23 Si 0.797 3.203 24 H -0.215 1.215 25 H -0.216 1.216 26 H -0.193 1.193 27 C 0.053 3.947 28 C -0.166 4.166 29 H 0.098 0.902 30 H 0.092 0.908 31 H 0.053 0.947 32 H 0.119 0.881 33 H 0.076 0.924 34 H 0.054 0.946 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.098 0.902 42 H 0.106 0.894 43 H 0.053 0.947 44 H 0.245 0.755 45 H 0.243 0.757 46 H 0.070 0.930 47 H 0.073 0.927 48 H 0.082 0.918 49 H 0.023 0.977 50 H 0.074 0.926 51 H 0.060 0.940 52 H 0.082 0.918 53 H 0.012 0.988 54 H 0.088 0.912 55 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.777 -7.673 -28.769 29.785 hybrid contribution 0.354 -0.082 0.483 0.604 sum -0.423 -7.755 -28.286 29.333 Atomic orbital electron populations 1.22117 0.94619 1.02919 1.01975 1.20796 0.93724 0.96107 0.83454 0.92460 1.22399 0.87578 1.02062 0.95309 1.61852 1.05006 1.11574 1.48153 1.22009 0.95138 0.90346 0.99417 1.21537 0.94504 0.99907 0.99478 1.21558 0.99835 0.95806 0.98385 1.21572 0.94291 0.96968 1.02436 1.22129 0.95952 0.97083 0.91842 1.44780 1.70592 1.13996 1.07299 1.16144 0.77875 0.84636 0.81222 1.90878 1.59528 1.16626 1.85358 1.45106 1.70632 1.14068 1.08517 1.20480 0.96456 0.93450 0.81815 1.22200 0.97392 0.99381 0.97088 1.20951 0.98416 0.91417 0.87309 1.44349 1.21538 1.45318 1.22004 1.19526 0.89273 1.42291 0.88290 0.91527 1.25818 0.97849 1.02391 0.98511 1.70195 1.16230 1.51943 1.19828 0.85236 0.78708 0.77630 0.78701 1.21494 1.21648 1.19274 1.20570 0.86445 0.93028 0.94696 1.22238 1.01957 0.97904 0.94500 0.90213 0.90793 0.94710 0.88052 0.92364 0.94613 0.92728 0.92825 0.91749 0.91648 0.91879 0.92040 0.90207 0.89438 0.94668 0.75496 0.75704 0.92956 0.92665 0.91810 0.97677 0.92566 0.93998 0.91759 0.98847 0.91198 0.90582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.63 9.48 71.98 0.68 -1.94 16 2 C 0.17 3.02 2.35 44.99 0.11 3.12 16 3 H 0.06 1.41 6.10 -2.39 -0.01 1.40 16 4 C 0.05 0.65 4.52 86.30 0.39 1.04 16 5 N -0.54 -7.65 4.38 -896.37 -3.93 -11.58 16 6 C 0.06 1.02 5.29 86.32 0.46 1.47 16 7 C -0.12 -1.97 6.09 30.64 0.19 -1.79 16 8 C -0.12 -1.53 6.00 30.67 0.18 -1.35 16 9 C -0.11 -1.30 6.09 30.64 0.19 -1.11 16 10 C 0.06 0.61 5.46 86.33 0.47 1.08 16 11 N -0.71 -14.59 4.81 -457.81 -2.20 -16.79 16 12 C 0.70 20.98 8.49 179.06 1.52 22.50 16 13 O -0.64 -25.44 15.67 -4.01 -0.06 -25.51 16 14 N -0.73 -20.48 5.08 -457.19 -2.32 -22.80 16 15 C 0.18 6.60 2.42 45.12 0.11 6.71 16 16 C -0.12 -4.56 5.68 30.78 0.17 -4.39 16 17 C 0.15 6.57 6.50 86.36 0.56 7.14 16 18 N -0.61 -31.57 3.00 -699.08 -2.09 -33.66 16 19 C -0.26 -14.76 9.58 84.04 0.81 -13.95 16 20 H 0.07 3.63 7.89 -2.91 -0.02 3.61 16 21 C -0.05 -2.84 4.91 84.87 0.42 -2.42 16 22 N -0.94 -55.88 11.19 21.65 0.24 -55.64 16 23 Si 0.97 44.97 29.59 68.60 2.03 47.00 16 24 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 25 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 26 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 27 C 0.18 8.76 5.31 86.36 0.46 9.22 16 28 C -0.13 -4.65 5.55 30.67 0.17 -4.48 16 29 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.10 0.83 7.99 -2.39 -0.02 0.81 16 33 H 0.06 0.61 8.12 -2.39 -0.02 0.59 16 34 H 0.04 0.56 8.14 -2.39 -0.02 0.55 16 35 H 0.05 1.22 6.32 -2.39 -0.02 1.21 16 36 H 0.05 1.10 8.14 -2.39 -0.02 1.09 16 37 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 39 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.08 0.67 8.14 -2.38 -0.02 0.65 16 42 H 0.09 0.72 8.01 -2.39 -0.02 0.70 16 43 H 0.04 0.36 8.14 -2.38 -0.02 0.34 16 44 H 0.41 6.29 8.62 -92.71 -0.80 5.49 16 45 H 0.41 8.79 8.62 -92.71 -0.80 7.99 16 46 H 0.05 2.20 7.58 -2.38 -0.02 2.18 16 47 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 48 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 49 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16 50 H 0.06 2.47 7.93 -2.39 -0.02 2.45 16 51 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 52 H 0.06 3.49 6.04 -2.39 -0.01 3.48 16 53 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 54 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 55 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 Total: -1.00 -70.82 418.71 -2.19 -73.02 By element: Atomic # 1 Polarization: 25.85 SS G_CDS: -0.74 Total: 25.11 kcal Atomic # 6 Polarization: 13.97 SS G_CDS: 6.88 Total: 20.85 kcal Atomic # 7 Polarization: -130.17 SS G_CDS: -10.30 Total: -140.47 kcal Atomic # 8 Polarization: -25.44 SS G_CDS: -0.06 Total: -25.51 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -70.82 -2.19 -73.02 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609341626.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.001 kcal (2) G-P(sol) polarization free energy of solvation -70.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds