Wall clock time and date at job start Tue Mar 31 2020 22:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46497 * 119.99948 * 2 1 4 4 C 1.52992 * 109.47088 * 269.99870 * 3 2 1 5 5 H 1.09002 * 109.50493 * 54.99879 * 4 3 2 6 6 C 1.53122 * 109.50321 * 175.07937 * 4 3 2 7 7 C 1.53124 * 109.16143 * 177.59615 * 6 4 3 8 8 C 1.53044 * 109.27610 * 302.34779 * 7 6 4 9 9 N 1.46838 * 109.52559 * 59.17831 * 8 7 6 10 10 C 1.46902 * 111.00141 * 174.16077 * 9 8 7 11 11 C 1.46853 * 111.23435 * 298.27664 * 9 8 7 12 12 C 1.34774 * 119.99828 * 179.97438 * 2 1 3 13 13 O 1.21581 * 119.99919 * 179.97438 * 12 2 1 14 14 N 1.34779 * 120.00195 * 0.02562 * 12 2 1 15 15 C 1.46496 * 119.99961 * 179.97438 * 14 12 2 16 16 C 1.53047 * 109.45994 * 205.00411 * 15 14 12 17 17 C 1.53189 * 109.31251 * 178.63262 * 16 15 14 18 18 N 1.46924 * 108.78252 * 54.62912 * 17 16 15 19 19 C 1.36932 * 120.63218 * 126.36968 * 18 17 16 20 20 H 1.08002 * 119.99717 * 332.22200 * 19 18 17 21 21 C 1.38806 * 119.99993 * 152.22388 * 19 18 17 22 22 N 1.31624 * 119.99751 * 143.70406 * 21 19 18 23 23 Si 1.86795 * 120.00268 * 323.97752 * 21 19 18 24 24 H 1.48494 * 109.47128 * 269.72595 * 23 21 19 25 25 H 1.48504 * 109.46931 * 29.72691 * 23 21 19 26 26 H 1.48501 * 109.47102 * 149.72072 * 23 21 19 27 27 C 1.46922 * 118.73611 * 306.64895 * 18 17 16 28 28 C 1.52760 * 109.01293 * 53.30338 * 27 18 17 29 29 H 1.08999 * 109.47023 * 269.99956 * 1 2 3 30 30 H 1.08992 * 109.47056 * 29.99722 * 1 2 3 31 31 H 1.09002 * 109.47077 * 150.00175 * 1 2 3 32 32 H 1.09004 * 109.46981 * 30.00036 * 3 2 1 33 33 H 1.08996 * 109.47179 * 149.99745 * 3 2 1 34 34 H 1.08998 * 109.52431 * 297.50084 * 6 4 3 35 35 H 1.08998 * 109.52039 * 57.62882 * 6 4 3 36 36 H 1.08996 * 109.49910 * 62.28402 * 7 6 4 37 37 H 1.08996 * 109.50474 * 182.36324 * 7 6 4 38 38 H 1.08998 * 109.45783 * 179.19940 * 8 7 6 39 39 H 1.08998 * 109.45943 * 299.16320 * 8 7 6 40 40 H 1.09002 * 109.46893 * 56.04889 * 10 9 8 41 41 H 1.08995 * 109.46976 * 176.04558 * 10 9 8 42 42 H 1.09000 * 109.46724 * 296.04341 * 10 9 8 43 43 H 1.09003 * 109.42941 * 301.68793 * 11 9 8 44 44 H 1.08995 * 109.49775 * 181.71578 * 11 9 8 45 45 H 0.97000 * 120.00077 * 0.02562 * 14 12 2 46 46 H 1.09000 * 109.46346 * 324.97398 * 15 14 12 47 47 H 1.09000 * 109.49773 * 58.67263 * 16 15 14 48 48 H 1.09004 * 109.52065 * 298.59100 * 16 15 14 49 49 H 1.09000 * 109.58389 * 294.84069 * 17 16 15 50 50 H 1.09002 * 109.70487 * 174.49585 * 17 16 15 51 51 H 0.97001 * 120.00333 * 355.18811 * 22 21 19 52 52 H 1.09000 * 109.59071 * 173.14209 * 27 18 17 53 53 H 1.09005 * 109.58634 * 293.56618 * 27 18 17 54 54 H 1.08993 * 109.56929 * 185.55084 * 28 27 18 55 55 H 1.09007 * 109.38300 * 65.51433 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7103 -1.4424 5 1 1.5065 1.7550 -1.9820 6 6 3.1084 3.0940 -1.4451 7 6 3.4148 3.5022 -2.8887 8 6 4.3193 2.4477 -3.5308 9 7 3.6469 1.1426 -3.5045 10 6 4.4258 0.1342 -4.2355 11 6 3.3842 0.7074 -2.1268 12 6 2.1389 -1.1672 0.0005 13 8 3.3547 -1.1672 0.0001 14 7 1.4650 -2.3344 0.0005 15 6 2.1975 -3.6031 0.0005 16 6 1.3199 -4.6986 -0.6094 17 6 2.1012 -6.0159 -0.6391 18 7 2.5805 -6.3123 0.7178 19 6 2.3073 -7.5181 1.3064 20 1 1.4200 -8.0667 1.0268 21 6 3.1707 -8.0352 2.2623 22 7 2.6906 -8.7016 3.2909 23 14 5.0132 -7.7790 2.0931 24 1 5.6006 -8.9038 1.3218 25 1 5.2720 -6.5019 1.3807 26 1 5.6318 -7.7273 3.4421 27 6 3.3532 -5.2879 1.4335 28 6 2.5625 -3.9808 1.4379 29 1 -0.3633 0.0000 1.0277 30 1 -0.3633 0.8899 -0.5138 31 1 -0.3633 -0.8900 -0.5138 32 1 1.6084 2.0284 0.5139 33 1 3.1499 1.1384 0.5139 34 1 2.4294 3.8198 -0.9976 35 1 4.0344 3.0592 -0.8711 36 1 2.4842 3.5749 -3.4516 37 1 3.9199 4.4680 -2.8944 38 1 4.5277 2.7282 -4.5633 39 1 5.2551 2.3854 -2.9756 40 1 5.4319 0.0806 -3.8196 41 1 3.9414 -0.8376 -4.1411 42 1 4.4819 0.4115 -5.2882 43 1 4.3245 0.6525 -1.5783 44 1 2.9133 -0.2755 -2.1393 45 1 0.4950 -2.3344 -0.0002 46 1 3.1079 -3.4968 -0.5893 47 1 1.0410 -4.4179 -1.6251 48 1 0.4204 -4.8227 -0.0063 49 1 2.9516 -5.9211 -1.3144 50 1 1.4512 -6.8212 -0.9811 51 1 1.7316 -8.7717 3.4187 52 1 3.5269 -5.6117 2.4597 53 1 4.3078 -5.1325 0.9307 54 1 3.1681 -3.1894 1.8794 55 1 1.6517 -4.1110 2.0224 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609686273.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:18 Heat of formation + Delta-G solvation = -23.405351 kcal Electronic energy + Delta-G solvation = -31454.751054 eV Core-core repulsion = 27526.211188 eV Total energy + Delta-G solvation = -3928.539867 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.55896 -40.04648 -39.19310 -36.81107 -36.06109 -34.72545 -34.03112 -32.46521 -31.94187 -31.26154 -28.12767 -27.78099 -27.11362 -25.92187 -24.31915 -23.81728 -23.46833 -22.60575 -21.36984 -20.75109 -20.57880 -19.48125 -18.80183 -17.64612 -17.20233 -16.67392 -16.34826 -16.11601 -16.02520 -15.68203 -15.59999 -15.45489 -15.36061 -15.07839 -14.89992 -14.62859 -14.20945 -14.11458 -13.97447 -13.78565 -13.66497 -13.47743 -13.30384 -13.20658 -13.16655 -12.93836 -12.55625 -12.45802 -12.36251 -12.18681 -11.97301 -11.84849 -11.68591 -11.64264 -11.49199 -11.46507 -11.23559 -11.20630 -11.09889 -10.43158 -10.09772 -9.45935 -9.35894 -9.04250 -8.58630 -5.43280 1.52115 1.53677 1.68108 1.74382 2.19222 2.58239 2.93553 2.93950 3.00504 3.45362 3.78672 3.81637 3.86807 3.91993 3.98084 4.11986 4.25264 4.27546 4.32769 4.34121 4.37983 4.46512 4.48538 4.53829 4.59218 4.63934 4.65176 4.68592 4.75151 4.78283 4.87353 4.87858 4.89762 4.90471 4.92072 4.98826 4.99209 5.02575 5.07085 5.08806 5.16859 5.19236 5.27388 5.41054 5.47833 5.57869 5.62862 5.85452 5.97858 6.04324 6.12697 6.28318 6.89073 7.01583 7.62326 7.62543 8.13877 8.79574 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.018033 B = 0.002646 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.342326 B =10578.324976 C =11111.852793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.631 5.631 3 C 0.138 3.862 4 C -0.091 4.091 5 H 0.084 0.916 6 C -0.112 4.112 7 C -0.110 4.110 8 C 0.049 3.951 9 N -0.552 5.552 10 C 0.027 3.973 11 C 0.081 3.919 12 C 0.698 3.302 13 O -0.627 6.627 14 N -0.730 5.730 15 C 0.182 3.818 16 C -0.123 4.123 17 C 0.141 3.859 18 N -0.613 5.613 19 C -0.347 4.347 20 H 0.037 0.963 21 C -0.046 4.046 22 N -0.935 5.935 23 Si 1.055 2.945 24 H -0.293 1.293 25 H -0.245 1.245 26 H -0.299 1.299 27 C 0.145 3.855 28 C -0.130 4.130 29 H 0.065 0.935 30 H 0.097 0.903 31 H 0.072 0.928 32 H 0.111 0.889 33 H 0.057 0.943 34 H 0.090 0.910 35 H 0.053 0.947 36 H 0.073 0.927 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.020 0.980 40 H 0.016 0.984 41 H 0.055 0.945 42 H 0.084 0.916 43 H 0.007 0.993 44 H 0.048 0.952 45 H 0.406 0.594 46 H 0.064 0.936 47 H 0.091 0.909 48 H 0.065 0.935 49 H 0.031 0.969 50 H 0.060 0.940 51 H 0.255 0.745 52 H 0.043 0.957 53 H 0.032 0.968 54 H 0.054 0.946 55 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.150 29.264 -13.556 32.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.367 5.367 3 C 0.014 3.986 4 C -0.111 4.111 5 H 0.102 0.898 6 C -0.150 4.150 7 C -0.148 4.148 8 C -0.079 4.079 9 N -0.276 5.276 10 C -0.121 4.121 11 C -0.047 4.047 12 C 0.399 3.601 13 O -0.508 6.508 14 N -0.386 5.386 15 C 0.077 3.923 16 C -0.162 4.162 17 C 0.016 3.984 18 N -0.338 5.338 19 C -0.476 4.476 20 H 0.055 0.945 21 C -0.244 4.244 22 N -0.574 5.574 23 Si 0.881 3.119 24 H -0.221 1.221 25 H -0.170 1.170 26 H -0.226 1.226 27 C 0.019 3.981 28 C -0.171 4.171 29 H 0.083 0.917 30 H 0.116 0.884 31 H 0.090 0.910 32 H 0.129 0.871 33 H 0.076 0.924 34 H 0.109 0.891 35 H 0.071 0.929 36 H 0.092 0.908 37 H 0.103 0.897 38 H 0.101 0.899 39 H 0.039 0.961 40 H 0.035 0.965 41 H 0.074 0.926 42 H 0.103 0.897 43 H 0.026 0.974 44 H 0.067 0.933 45 H 0.244 0.756 46 H 0.082 0.918 47 H 0.109 0.891 48 H 0.084 0.916 49 H 0.049 0.951 50 H 0.078 0.922 51 H 0.064 0.936 52 H 0.061 0.939 53 H 0.050 0.950 54 H 0.073 0.927 55 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.321 28.933 -13.135 31.948 hybrid contribution -0.976 -0.781 0.160 1.260 sum -4.297 28.152 -12.976 31.295 Atomic orbital electron populations 1.21954 0.77563 1.04479 1.02810 1.47099 1.07727 1.04159 1.77748 1.21468 0.97164 0.83781 0.96181 1.21563 0.99156 0.94841 0.95510 0.89779 1.21582 1.00772 0.95399 0.97270 1.21556 1.00233 0.97579 0.95428 1.22218 0.95143 0.89212 1.01289 1.62024 1.47315 1.03510 1.14764 1.22330 0.95129 0.95388 0.99292 1.21924 0.97385 0.97984 0.87436 1.16101 0.85081 0.81301 0.77569 1.90896 1.13456 1.86812 1.59599 1.45292 1.10160 1.03906 1.79291 1.20459 0.94956 0.81703 0.95219 1.22124 0.98425 0.94256 1.01442 1.21071 0.96408 0.95358 0.85574 1.44451 1.64054 1.12237 1.13031 1.19909 1.05616 0.99635 1.22435 0.94547 1.27045 1.07930 0.96294 0.93149 1.70997 1.14680 1.46338 1.25420 0.84097 0.73947 0.78064 0.75786 1.22115 1.16997 1.22605 1.21208 0.93375 0.88038 0.95459 1.22202 1.00253 0.97030 0.97611 0.91661 0.88441 0.90963 0.87095 0.92429 0.89110 0.92865 0.90808 0.89651 0.89858 0.96142 0.96548 0.92561 0.89721 0.97439 0.93313 0.75608 0.91762 0.89068 0.91616 0.95054 0.92159 0.93641 0.93891 0.95039 0.92702 0.92695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.81 10.20 127.77 1.30 2.11 16 2 N -0.63 -12.22 2.76 -864.94 -2.39 -14.61 16 3 C 0.14 2.36 5.00 86.38 0.43 2.79 16 4 C -0.09 -1.51 2.56 -10.74 -0.03 -1.54 16 5 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 6 C -0.11 -1.42 5.29 30.68 0.16 -1.25 16 7 C -0.11 -1.34 6.09 30.65 0.19 -1.15 16 8 C 0.05 0.82 5.46 86.33 0.47 1.29 16 9 N -0.55 -11.72 4.91 -922.58 -4.53 -16.25 16 10 C 0.03 0.56 9.62 127.69 1.23 1.79 16 11 C 0.08 1.94 3.47 86.33 0.30 2.24 16 12 C 0.70 19.49 6.84 179.05 1.22 20.71 16 13 O -0.63 -22.89 13.78 -3.97 -0.05 -22.95 16 14 N -0.73 -18.79 4.94 -457.69 -2.26 -21.05 16 15 C 0.18 5.84 2.42 45.02 0.11 5.95 16 16 C -0.12 -3.68 5.55 30.67 0.17 -3.51 16 17 C 0.14 5.42 6.52 86.36 0.56 5.98 16 18 N -0.61 -29.31 2.72 -699.95 -1.90 -31.21 16 19 C -0.35 -19.71 9.70 84.03 0.82 -18.89 16 20 H 0.04 2.24 8.06 -2.91 -0.02 2.21 16 21 C -0.05 -2.70 4.82 84.86 0.41 -2.29 16 22 N -0.93 -59.18 13.70 21.65 0.30 -58.89 16 23 Si 1.06 52.91 27.00 68.60 1.85 54.76 16 24 H -0.29 -14.42 7.11 99.48 0.71 -13.71 16 25 H -0.25 -11.27 4.73 99.48 0.47 -10.80 16 26 H -0.30 -15.18 7.11 99.48 0.71 -14.47 16 27 C 0.15 6.54 4.34 86.22 0.37 6.91 16 28 C -0.13 -4.93 5.63 30.53 0.17 -4.76 16 29 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.10 0.62 8.07 -2.39 -0.02 0.61 16 31 H 0.07 0.72 6.36 -2.39 -0.02 0.70 16 32 H 0.11 1.15 8.07 -2.38 -0.02 1.13 16 33 H 0.06 1.32 7.42 -2.39 -0.02 1.30 16 34 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.05 0.78 8.14 -2.39 -0.02 0.77 16 36 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.08 1.17 8.12 -2.39 -0.02 1.15 16 39 H 0.02 0.38 8.14 -2.39 -0.02 0.36 16 40 H 0.02 0.36 8.14 -2.39 -0.02 0.34 16 41 H 0.06 1.28 8.02 -2.39 -0.02 1.26 16 42 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.01 0.22 7.96 -2.39 -0.02 0.20 16 44 H 0.05 1.42 6.04 -2.39 -0.01 1.41 16 45 H 0.41 7.96 6.33 -92.71 -0.59 7.38 16 46 H 0.06 2.34 7.58 -2.39 -0.02 2.32 16 47 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 48 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 49 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 50 H 0.06 2.32 7.93 -2.39 -0.02 2.30 16 51 H 0.25 16.12 8.73 -92.71 -0.81 15.31 16 52 H 0.04 2.12 5.83 -2.39 -0.01 2.11 16 53 H 0.03 1.43 6.60 -2.38 -0.02 1.41 16 54 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 55 H 0.05 2.11 8.14 -2.38 -0.02 2.09 16 Total: -1.00 -74.38 407.38 -1.11 -75.49 By element: Atomic # 1 Polarization: 18.34 SS G_CDS: -0.02 Total: 18.32 kcal Atomic # 6 Polarization: 8.49 SS G_CDS: 7.89 Total: 16.38 kcal Atomic # 7 Polarization: -131.22 SS G_CDS: -10.79 Total: -142.01 kcal Atomic # 8 Polarization: -22.89 SS G_CDS: -0.05 Total: -22.95 kcal Atomic # 14 Polarization: 52.91 SS G_CDS: 1.85 Total: 54.76 kcal Total: -74.38 -1.11 -75.49 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609686273.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.086 kcal (2) G-P(sol) polarization free energy of solvation -74.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds