Wall clock time and date at job start Tue Mar 31 2020 22:17:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46900 * 109.46820 * 2 1 4 4 C 1.46901 * 110.99573 * 170.00113 * 3 2 1 5 5 C 1.53239 * 109.33874 * 187.25460 * 4 3 2 6 6 N 1.47078 * 108.52095 * 306.17016 * 5 4 3 7 7 C 1.34780 * 120.87842 * 231.16153 * 6 5 4 8 8 O 1.21282 * 119.99995 * 175.14441 * 7 6 5 9 9 C 1.50695 * 120.00169 * 355.15395 * 7 6 5 10 10 H 1.09002 * 109.47573 * 37.41393 * 9 7 6 11 11 C 1.53002 * 109.46983 * 277.41833 * 9 7 6 12 12 N 1.46900 * 109.47458 * 157.41997 * 9 7 6 13 13 C 1.46961 * 110.99653 * 296.75558 * 12 9 7 14 14 C 1.53052 * 109.36082 * 176.81032 * 13 12 9 15 15 N 1.46961 * 109.36595 * 58.40051 * 14 13 12 16 16 C 1.46902 * 110.99743 * 176.80830 * 15 14 13 17 17 C 1.50696 * 109.46986 * 58.92262 * 16 15 14 18 18 H 1.07997 * 120.00166 * 5.06713 * 17 16 15 19 19 C 1.37875 * 119.99885 * 185.05852 * 17 16 15 20 20 N 1.31519 * 119.99806 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 120.00176 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.46932 * 90.00410 * 21 19 17 23 23 H 1.48499 * 109.46956 * 210.00376 * 21 19 17 24 24 H 1.48498 * 109.46963 * 330.00388 * 21 19 17 25 25 C 1.46947 * 110.87952 * 300.67985 * 15 14 13 26 26 C 1.46951 * 111.00215 * 172.95426 * 12 9 7 27 27 C 1.47071 * 118.23838 * 51.18564 * 6 5 4 28 28 C 1.46901 * 111.00222 * 294.29789 * 3 2 1 29 29 H 1.09002 * 109.46941 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46877 * 300.00048 * 1 2 3 31 31 H 1.09005 * 109.46745 * 59.99867 * 1 2 3 32 32 H 1.08998 * 109.46877 * 239.99952 * 2 1 3 33 33 H 1.08996 * 109.46889 * 119.99862 * 2 1 3 34 34 H 1.09001 * 109.49378 * 307.21257 * 4 3 2 35 35 H 1.08993 * 109.49757 * 67.29557 * 4 3 2 36 36 H 1.09007 * 109.62763 * 65.87963 * 5 4 3 37 37 H 1.08999 * 109.63087 * 186.45645 * 5 4 3 38 38 H 1.09004 * 109.47469 * 54.50492 * 11 9 7 39 39 H 1.09002 * 109.47586 * 174.50548 * 11 9 7 40 40 H 1.09005 * 109.46901 * 294.50481 * 11 9 7 41 41 H 1.08997 * 109.48785 * 296.77219 * 13 12 9 42 42 H 1.08999 * 109.48904 * 56.84597 * 13 12 9 43 43 H 1.08992 * 109.48946 * 298.43189 * 14 13 12 44 44 H 1.08999 * 109.48734 * 178.36626 * 14 13 12 45 45 H 1.09004 * 109.46748 * 178.92213 * 16 15 14 46 46 H 1.08999 * 109.47099 * 298.91640 * 16 15 14 47 47 H 0.97000 * 119.99724 * 179.97438 * 20 19 17 48 48 H 1.09003 * 109.48851 * 299.34884 * 25 15 14 49 49 H 1.09000 * 109.49296 * 179.28822 * 25 15 14 50 50 H 1.09001 * 109.49335 * 303.15494 * 26 12 9 51 51 H 1.09003 * 109.48905 * 63.19654 * 26 12 9 52 52 H 1.09003 * 109.63059 * 189.10823 * 27 6 5 53 53 H 1.08997 * 109.79145 * 68.62005 * 27 6 5 54 54 H 1.08992 * 109.49275 * 292.71014 * 28 3 2 55 55 H 1.08998 * 109.48549 * 52.79302 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4685 1.4311 0.2381 5 6 3.9083 2.8888 0.4110 6 7 3.4446 3.6579 -0.7538 7 6 4.2947 4.4382 -1.4504 8 8 3.9176 4.9960 -2.4592 9 6 5.7137 4.6174 -0.9760 10 1 6.0810 3.6769 -0.5650 11 6 5.7570 5.6981 0.1062 12 7 6.5606 5.0219 -2.1061 13 6 6.6046 3.9718 -3.1334 14 6 7.4296 4.4626 -4.3255 15 7 8.7839 4.8085 -3.8715 16 6 9.6307 5.2129 -5.0018 17 6 9.0117 6.4000 -5.6936 18 1 8.1270 6.8636 -5.2828 19 6 9.5748 6.8942 -6.8510 20 7 10.6520 6.3294 -7.3514 21 14 8.8072 8.3653 -7.7090 22 1 9.4063 9.6161 -7.1782 23 1 9.0620 8.2751 -9.1692 24 1 7.3430 8.3740 -7.4617 25 6 8.7398 5.8583 -2.8443 26 6 7.9148 5.3677 -1.6522 27 6 2.0288 3.5534 -1.1380 28 6 1.6631 2.0695 -1.2499 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.7067 0.8698 1.1416 35 1 3.9910 0.9920 -0.6116 36 1 3.4674 3.2990 1.3196 37 1 4.9953 2.9385 0.4735 38 1 5.0546 5.4454 0.9005 39 1 6.7643 5.7598 0.5181 40 1 5.4830 6.6592 -0.3291 41 1 7.0643 3.0753 -2.7175 42 1 5.5912 3.7422 -3.4624 43 1 6.9551 5.3432 -4.7582 44 1 7.4880 3.6746 -5.0763 45 1 10.6215 5.4817 -4.6354 46 1 9.7160 4.3855 -5.7062 47 1 11.0480 6.6769 -8.1659 48 1 8.2802 6.7550 -3.2602 49 1 9.7532 6.0881 -2.5153 50 1 7.8565 6.1557 -0.9013 51 1 8.3891 4.4871 -1.2191 52 1 1.8733 4.0423 -2.0997 53 1 1.4050 4.0282 -0.3808 54 1 2.2107 1.6214 -2.0790 55 1 0.5919 1.9711 -1.4255 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611173998.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:29 Heat of formation + Delta-G solvation = -25.072378 kcal Electronic energy + Delta-G solvation = -31318.963456 eV Core-core repulsion = 27390.351302 eV Total energy + Delta-G solvation = -3928.612154 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.64325 -40.14153 -39.06496 -36.92273 -36.06702 -34.64736 -32.77581 -32.22421 -31.88392 -31.24639 -29.02878 -27.77666 -26.79743 -25.62943 -24.50596 -23.92441 -23.40472 -22.82148 -21.63202 -20.71904 -19.85148 -18.64985 -18.29477 -17.58709 -16.92065 -16.65141 -16.48554 -16.34248 -15.96634 -15.87303 -15.70236 -15.59541 -15.46136 -15.16431 -14.97330 -14.71787 -14.41738 -14.09033 -13.82407 -13.67213 -13.42232 -13.20706 -13.08865 -12.93348 -12.91077 -12.82620 -12.74483 -12.62995 -12.42199 -12.29142 -12.25386 -12.17714 -12.12885 -12.02066 -11.81719 -11.74291 -11.65640 -11.33668 -10.65611 -10.62361 -9.83725 -9.32304 -9.27295 -9.05035 -8.18547 -6.36908 1.32699 1.33611 1.45260 1.57757 1.84216 2.34907 2.82230 2.87930 3.05924 3.33799 3.42923 3.83189 3.90657 3.95859 3.97316 4.01120 4.07338 4.20122 4.22698 4.24309 4.38192 4.40458 4.44013 4.49082 4.51501 4.52317 4.62177 4.66083 4.70533 4.72794 4.77127 4.78462 4.82796 4.91017 4.99854 5.02113 5.03719 5.09335 5.11823 5.21079 5.22154 5.25739 5.31107 5.36681 5.46275 5.70851 5.92962 5.98227 6.01570 6.02696 6.07090 6.23983 6.40916 6.47837 6.83088 7.19235 7.33831 8.83959 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.018759 B = 0.002440 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.271882 B =11473.774437 C =11804.877509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.049 3.951 3 N -0.539 5.539 4 C 0.039 3.961 5 C 0.107 3.893 6 N -0.614 5.614 7 C 0.516 3.484 8 O -0.568 6.568 9 C 0.068 3.932 10 H 0.085 0.915 11 C -0.137 4.137 12 N -0.539 5.539 13 C 0.079 3.921 14 C 0.073 3.927 15 N -0.537 5.537 16 C 0.200 3.800 17 C -0.554 4.554 18 H 0.049 0.951 19 C 0.013 3.987 20 N -0.924 5.924 21 Si 0.955 3.045 22 H -0.270 1.270 23 H -0.277 1.277 24 H -0.277 1.277 25 C 0.061 3.939 26 C 0.071 3.929 27 C 0.117 3.883 28 C 0.047 3.953 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.050 0.950 32 H 0.025 0.975 33 H 0.089 0.911 34 H 0.113 0.887 35 H 0.025 0.975 36 H 0.096 0.904 37 H 0.104 0.896 38 H 0.088 0.912 39 H 0.091 0.909 40 H 0.051 0.949 41 H 0.046 0.954 42 H 0.063 0.937 43 H 0.014 0.986 44 H 0.058 0.942 45 H 0.010 0.990 46 H 0.007 0.993 47 H 0.266 0.734 48 H 0.016 0.984 49 H 0.074 0.926 50 H 0.104 0.896 51 H 0.053 0.947 52 H 0.071 0.929 53 H 0.086 0.914 54 H 0.019 0.981 55 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.308 -12.481 23.908 32.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.078 4.078 3 N -0.264 5.264 4 C -0.089 4.089 5 C -0.015 4.015 6 N -0.349 5.349 7 C 0.305 3.695 8 O -0.446 6.446 9 C -0.043 4.043 10 H 0.103 0.897 11 C -0.194 4.194 12 N -0.266 5.266 13 C -0.049 4.049 14 C -0.056 4.056 15 N -0.261 5.261 16 C 0.073 3.927 17 C -0.593 4.593 18 H 0.067 0.933 19 C -0.186 4.186 20 N -0.563 5.563 21 Si 0.780 3.220 22 H -0.195 1.195 23 H -0.202 1.202 24 H -0.202 1.202 25 C -0.067 4.067 26 C -0.056 4.056 27 C -0.006 4.006 28 C -0.082 4.082 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.044 0.956 33 H 0.107 0.893 34 H 0.131 0.869 35 H 0.043 0.957 36 H 0.114 0.886 37 H 0.122 0.878 38 H 0.107 0.893 39 H 0.109 0.891 40 H 0.070 0.930 41 H 0.064 0.936 42 H 0.081 0.919 43 H 0.033 0.967 44 H 0.076 0.924 45 H 0.028 0.972 46 H 0.025 0.975 47 H 0.075 0.925 48 H 0.035 0.965 49 H 0.093 0.907 50 H 0.122 0.878 51 H 0.071 0.929 52 H 0.089 0.911 53 H 0.105 0.895 54 H 0.037 0.963 55 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -18.605 -11.944 23.619 32.352 hybrid contribution 0.265 0.396 -2.155 2.207 sum -18.340 -11.549 21.463 30.503 Atomic orbital electron populations 1.21788 0.94071 1.02272 1.02275 1.22148 0.96791 0.87715 1.01153 1.62054 1.13766 1.16581 1.34004 1.22562 0.87504 0.96786 1.02092 1.22173 1.01121 0.90212 0.87990 1.48286 1.09634 1.45760 1.31181 1.20921 0.88092 0.77861 0.82651 1.90709 1.78441 1.49132 1.26276 1.21720 0.89635 1.00731 0.92185 0.89733 1.21838 1.04660 0.96910 0.96019 1.61788 1.12280 1.41415 1.11097 1.21956 0.98474 0.92296 0.92222 1.21794 0.89164 0.98605 0.96020 1.62666 1.10738 1.39839 1.12877 1.19405 0.92014 0.93460 0.87794 1.21929 1.12139 1.15540 1.09701 0.93323 1.25768 0.95334 0.99772 0.97773 1.70051 1.21829 1.42315 1.22142 0.85609 0.78593 0.79907 0.77911 1.19484 1.20197 1.20200 1.22021 0.99343 0.93010 0.92364 1.22232 0.86167 1.01006 0.96185 1.21651 0.81081 0.96329 1.01564 1.22444 1.02072 0.93395 0.90303 0.91236 0.91779 0.93070 0.95627 0.89285 0.86907 0.95686 0.88566 0.87814 0.89291 0.89057 0.93014 0.93641 0.91869 0.96729 0.92352 0.97190 0.97531 0.92524 0.96531 0.90737 0.87765 0.92883 0.91080 0.89537 0.96250 0.88031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.84 71.98 0.71 -0.57 16 2 C 0.05 0.50 5.68 86.31 0.49 0.99 16 3 N -0.54 -6.81 4.63 -895.25 -4.14 -10.95 16 4 C 0.04 0.44 5.62 86.38 0.49 0.92 16 5 C 0.11 1.24 6.23 86.35 0.54 1.77 16 6 N -0.61 -12.04 3.01 -817.95 -2.46 -14.50 16 7 C 0.52 14.01 6.02 87.65 0.53 14.54 16 8 O -0.57 -21.56 14.92 -3.03 -0.05 -21.61 16 9 C 0.07 1.58 1.70 44.17 0.08 1.66 16 10 H 0.09 1.52 6.16 -2.39 -0.01 1.51 16 11 C -0.14 -2.39 8.50 71.98 0.61 -1.78 16 12 N -0.54 -17.32 4.26 -874.87 -3.73 -21.05 16 13 C 0.08 2.80 5.30 86.31 0.46 3.26 16 14 C 0.07 3.26 5.24 86.31 0.45 3.71 16 15 N -0.54 -24.59 4.92 -900.30 -4.43 -29.02 16 16 C 0.20 11.05 5.14 85.56 0.44 11.49 16 17 C -0.55 -32.66 7.66 25.60 0.20 -32.46 16 18 H 0.05 2.94 5.82 -2.91 -0.02 2.92 16 19 C 0.01 0.77 5.46 84.65 0.46 1.23 16 20 N -0.92 -56.62 13.29 21.45 0.28 -56.34 16 21 Si 0.95 46.61 29.54 68.60 2.03 48.64 16 22 H -0.27 -12.63 7.11 99.48 0.71 -11.93 16 23 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 24 H -0.28 -13.59 7.11 99.48 0.71 -12.88 16 25 C 0.06 2.46 5.32 86.31 0.46 2.92 16 26 C 0.07 2.11 5.14 86.31 0.44 2.55 16 27 C 0.12 2.20 6.61 86.35 0.57 2.77 16 28 C 0.05 0.73 5.46 86.38 0.47 1.20 16 29 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.05 0.49 6.40 -2.38 -0.02 0.48 16 32 H 0.03 0.31 8.12 -2.39 -0.02 0.29 16 33 H 0.09 0.69 7.97 -2.39 -0.02 0.67 16 34 H 0.11 0.73 7.99 -2.39 -0.02 0.71 16 35 H 0.02 0.36 8.14 -2.39 -0.02 0.34 16 36 H 0.10 0.83 8.14 -2.38 -0.02 0.81 16 37 H 0.10 0.93 5.48 -2.39 -0.01 0.92 16 38 H 0.09 1.08 7.89 -2.38 -0.02 1.06 16 39 H 0.09 1.25 6.59 -2.39 -0.02 1.24 16 40 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16 41 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.06 2.37 6.40 -2.39 -0.02 2.35 16 43 H 0.01 0.75 6.61 -2.39 -0.02 0.73 16 44 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 45 H 0.01 0.58 8.12 -2.39 -0.02 0.56 16 46 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 47 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 48 H 0.02 0.76 6.78 -2.39 -0.02 0.75 16 49 H 0.07 2.86 8.12 -2.39 -0.02 2.84 16 50 H 0.10 2.50 6.14 -2.39 -0.01 2.49 16 51 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 52 H 0.07 1.71 7.04 -2.39 -0.02 1.70 16 53 H 0.09 1.39 8.14 -2.39 -0.02 1.38 16 54 H 0.02 0.38 8.14 -2.39 -0.02 0.36 16 55 H 0.10 1.32 6.16 -2.39 -0.01 1.30 16 Total: -1.00 -75.60 406.49 -4.25 -79.85 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: 0.85 Total: 10.78 kcal Atomic # 6 Polarization: 6.81 SS G_CDS: 7.39 Total: 14.20 kcal Atomic # 7 Polarization: -117.39 SS G_CDS: -14.47 Total: -131.87 kcal Atomic # 8 Polarization: -21.56 SS G_CDS: -0.05 Total: -21.61 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.64 kcal Total: -75.60 -4.25 -79.85 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611173998.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.780 kcal (2) G-P(sol) polarization free energy of solvation -75.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds