Wall clock time and date at job start Tue Mar 31 2020 22:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46904 * 109.46969 * 2 1 4 4 C 1.46896 * 110.99443 * 66.13031 * 3 2 1 5 5 C 1.53243 * 109.35893 * 187.26357 * 4 3 2 6 6 H 1.09002 * 109.62815 * 186.44424 * 5 4 3 7 7 C 1.53000 * 109.62606 * 66.06259 * 5 4 3 8 8 N 1.47082 * 108.52314 * 306.15982 * 5 4 3 9 9 C 1.34779 * 120.87839 * 231.16209 * 8 5 4 10 10 O 1.21583 * 120.00056 * 354.81714 * 9 8 5 11 11 N 1.34777 * 119.99785 * 174.81509 * 9 8 5 12 12 C 1.46494 * 119.99985 * 175.26746 * 11 9 8 13 13 C 1.53041 * 109.46327 * 275.07033 * 12 11 9 14 14 C 1.53187 * 109.31577 * 178.61485 * 13 12 11 15 15 N 1.46931 * 108.77571 * 54.63469 * 14 13 12 16 16 C 1.36939 * 120.63077 * 126.37152 * 15 14 13 17 17 H 1.07991 * 119.99663 * 202.24132 * 16 15 14 18 18 C 1.38817 * 119.99887 * 22.24141 * 16 15 14 19 19 N 1.31618 * 119.99880 * 28.09161 * 18 16 15 20 20 Si 1.86799 * 119.99591 * 208.09550 * 18 16 15 21 21 H 1.48501 * 109.47125 * 94.99325 * 20 18 16 22 22 H 1.48498 * 109.46685 * 214.99119 * 20 18 16 23 23 H 1.48496 * 109.47589 * 334.99397 * 20 18 16 24 24 C 1.46923 * 118.73917 * 306.39136 * 15 14 13 25 25 C 1.53041 * 109.45810 * 155.00272 * 12 11 9 26 26 C 1.47074 * 118.23623 * 51.17875 * 8 5 4 27 27 C 1.46950 * 111.03783 * 190.41926 * 3 2 1 28 28 H 1.08997 * 109.50830 * 292.74340 * 27 3 2 29 29 C 1.53002 * 109.48133 * 52.79877 * 27 3 2 30 30 H 1.08997 * 109.47535 * 59.99665 * 1 2 3 31 31 H 1.09002 * 109.46887 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47024 * 299.99137 * 1 2 3 33 33 H 1.09006 * 109.46661 * 240.00349 * 2 1 3 34 34 H 1.08997 * 109.47535 * 120.00335 * 2 1 3 35 35 H 1.09003 * 109.49469 * 67.29383 * 4 3 2 36 36 H 1.08997 * 109.49684 * 307.23363 * 4 3 2 37 37 H 1.09004 * 109.47209 * 59.99998 * 7 5 4 38 38 H 1.09000 * 109.46952 * 179.97438 * 7 5 4 39 39 H 1.08995 * 109.47153 * 300.00098 * 7 5 4 40 40 H 0.97003 * 120.00015 * 355.27420 * 11 9 8 41 41 H 1.09004 * 109.46009 * 35.02907 * 12 11 9 42 42 H 1.09003 * 109.49587 * 298.56619 * 13 12 11 43 43 H 1.09002 * 109.49898 * 58.65920 * 13 12 11 44 44 H 1.09002 * 109.58818 * 294.84939 * 14 13 12 45 45 H 1.08997 * 109.58675 * 174.42290 * 14 13 12 46 46 H 0.97004 * 119.99304 * 179.97438 * 19 18 16 47 47 H 1.09004 * 109.58867 * 293.82527 * 24 15 14 48 48 H 1.08999 * 109.70642 * 173.46486 * 24 15 14 49 49 H 1.08994 * 109.49933 * 301.33737 * 25 12 11 50 50 H 1.08997 * 109.49830 * 61.40701 * 25 12 11 51 51 H 1.09006 * 109.62836 * 68.53331 * 26 8 5 52 52 H 1.09001 * 109.62963 * 188.90771 * 26 8 5 53 53 H 1.09004 * 109.47176 * 170.71169 * 29 27 3 54 54 H 1.09003 * 109.47245 * 290.70931 * 29 27 3 55 55 H 1.08999 * 109.47299 * 50.71396 * 29 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6718 2.0662 1.2541 5 6 2.0363 3.5506 1.1440 6 1 1.8871 4.0368 2.1081 7 6 1.1530 4.2197 0.0890 8 7 3.4494 3.6568 0.7503 9 6 4.3039 4.4354 1.4433 10 8 3.8917 5.1342 2.3488 11 7 5.6153 4.4393 1.1324 12 6 6.5271 5.3609 1.8147 13 6 6.5039 6.7179 1.1076 14 6 7.4319 7.6890 1.8442 15 7 8.7669 7.0834 1.9442 16 6 9.8739 7.7581 1.5031 17 1 10.7692 7.2138 1.2416 18 6 9.8451 9.1415 1.3922 19 7 9.0554 9.8480 2.1728 20 14 10.9272 10.0002 0.1348 21 1 10.1492 10.2386 -1.1074 22 1 11.3907 11.2991 0.6855 23 1 12.1019 9.1457 -0.1734 24 6 8.8914 5.7401 2.5261 25 6 7.9470 4.7908 1.7818 26 6 3.9052 2.8911 -0.4198 27 6 3.4673 1.4328 -0.2480 28 1 3.9960 0.9912 0.5966 29 6 3.7930 0.6486 -1.5208 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 2.2253 1.6160 2.0782 36 1 0.6019 1.9671 1.4374 37 1 0.1063 4.1245 0.3780 38 1 1.4140 5.2753 0.0130 39 1 1.3091 3.7361 -0.8753 40 1 5.9554 3.8320 0.4568 41 1 6.2097 5.4856 2.8500 42 1 6.8449 6.5982 0.0792 43 1 5.4878 7.1126 1.1108 44 1 7.0416 7.8802 2.8438 45 1 7.4959 8.6250 1.2895 46 1 9.0356 10.8147 2.0955 47 1 8.6200 5.7723 3.5814 48 1 9.9181 5.3888 2.4235 49 1 7.9581 3.8139 2.2649 50 1 8.2742 4.6888 0.7471 51 1 3.4580 3.3037 -1.3242 52 1 4.9916 2.9442 -0.4916 53 1 4.8338 0.8190 -1.7962 54 1 3.6338 -0.4150 -1.3430 55 1 3.1437 0.9829 -2.3298 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611222505.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:57 Heat of formation + Delta-G solvation = -12.687174 kcal Electronic energy + Delta-G solvation = -31431.011865 eV Core-core repulsion = 27502.936774 eV Total energy + Delta-G solvation = -3928.075092 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.77259 -40.07459 -38.91724 -36.31437 -36.07907 -34.56913 -33.72930 -32.31997 -31.66126 -30.85750 -29.86715 -27.49683 -26.87266 -26.58211 -24.11127 -23.94799 -23.01040 -22.64262 -21.47755 -21.15874 -19.92438 -19.21629 -18.62964 -17.61354 -16.87315 -16.78977 -16.52573 -16.24778 -15.78442 -15.71000 -15.56559 -15.40264 -15.31201 -14.93717 -14.80541 -14.50076 -14.22020 -14.11052 -13.78333 -13.27129 -13.23060 -13.14107 -13.13089 -13.06996 -12.83978 -12.74263 -12.61114 -12.58570 -12.36631 -12.20142 -12.11363 -12.04490 -11.98471 -11.84839 -11.73545 -11.53805 -11.41808 -11.40040 -11.11637 -10.53828 -10.16909 -9.63894 -9.20788 -8.82998 -7.91526 -5.24904 1.46926 1.49903 1.55344 1.58990 2.11280 2.52470 2.83644 2.86226 3.22037 3.63586 3.71911 3.82108 3.84688 3.93579 4.06266 4.10215 4.17427 4.26572 4.32128 4.37936 4.44885 4.45499 4.49661 4.61782 4.63811 4.64491 4.69582 4.77267 4.78710 4.81893 4.84863 4.90935 4.97804 5.01787 5.05979 5.07843 5.10365 5.11086 5.19221 5.28637 5.34098 5.38406 5.41235 5.43040 5.53029 5.57919 5.62098 5.68948 5.90943 6.07245 6.15800 6.33021 6.96604 7.09856 7.55513 7.83910 8.35691 9.16753 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.023310 B = 0.002383 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.918990 B =11745.316437 C =12050.316752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.046 3.954 3 N -0.529 5.529 4 C 0.055 3.945 5 C 0.154 3.846 6 H 0.074 0.926 7 C -0.140 4.140 8 N -0.624 5.624 9 C 0.701 3.299 10 O -0.637 6.637 11 N -0.726 5.726 12 C 0.180 3.820 13 C -0.127 4.127 14 C 0.181 3.819 15 N -0.608 5.608 16 C -0.262 4.262 17 H 0.077 0.923 18 C -0.054 4.054 19 N -0.931 5.931 20 Si 0.960 3.040 21 H -0.288 1.288 22 H -0.299 1.299 23 H -0.263 1.263 24 C 0.142 3.858 25 C -0.119 4.119 26 C 0.118 3.882 27 C 0.070 3.930 28 H 0.035 0.965 29 C -0.141 4.141 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.051 0.949 33 H 0.093 0.907 34 H 0.026 0.974 35 H 0.023 0.977 36 H 0.105 0.895 37 H 0.079 0.921 38 H 0.032 0.968 39 H 0.074 0.926 40 H 0.407 0.593 41 H 0.054 0.946 42 H 0.062 0.938 43 H 0.041 0.959 44 H -0.011 1.011 45 H 0.054 0.946 46 H 0.249 0.751 47 H 0.011 0.989 48 H 0.070 0.930 49 H 0.089 0.911 50 H 0.077 0.923 51 H 0.083 0.917 52 H 0.092 0.908 53 H 0.075 0.925 54 H 0.068 0.932 55 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.282 -24.980 -9.410 31.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.081 4.081 3 N -0.255 5.255 4 C -0.074 4.074 5 C 0.050 3.950 6 H 0.092 0.908 7 C -0.198 4.198 8 N -0.361 5.361 9 C 0.403 3.597 10 O -0.518 6.518 11 N -0.383 5.383 12 C 0.074 3.926 13 C -0.168 4.168 14 C 0.054 3.946 15 N -0.331 5.331 16 C -0.392 4.392 17 H 0.095 0.905 18 C -0.249 4.249 19 N -0.577 5.577 20 Si 0.789 3.211 21 H -0.215 1.215 22 H -0.226 1.226 23 H -0.187 1.187 24 C 0.016 3.984 25 C -0.159 4.159 26 C -0.005 4.005 27 C -0.039 4.039 28 H 0.053 0.947 29 C -0.199 4.199 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.070 0.930 33 H 0.111 0.889 34 H 0.045 0.955 35 H 0.041 0.959 36 H 0.123 0.877 37 H 0.098 0.902 38 H 0.052 0.948 39 H 0.093 0.907 40 H 0.245 0.755 41 H 0.072 0.928 42 H 0.081 0.919 43 H 0.060 0.940 44 H 0.007 0.993 45 H 0.072 0.928 46 H 0.058 0.942 47 H 0.029 0.971 48 H 0.089 0.911 49 H 0.108 0.892 50 H 0.096 0.904 51 H 0.101 0.899 52 H 0.110 0.890 53 H 0.094 0.906 54 H 0.086 0.914 55 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -16.784 -24.087 -9.128 30.744 hybrid contribution 0.988 0.660 0.419 1.260 sum -15.795 -23.427 -8.708 29.566 Atomic orbital electron populations 1.21776 0.94113 1.02158 1.02250 1.22232 0.96660 0.87886 1.01367 1.62062 1.13300 1.16615 1.33475 1.22450 1.02165 0.92426 0.90383 1.21182 0.78946 0.95857 0.99002 0.90788 1.21888 0.99383 0.98870 0.99653 1.47484 1.09189 1.48243 1.31206 1.16099 0.81750 0.80200 0.81653 1.90883 1.77934 1.47550 1.35455 1.45280 1.05613 1.42464 1.44930 1.20518 0.89056 0.87881 0.95102 1.22283 0.98110 0.96390 0.99981 1.20474 0.83713 0.94983 0.95443 1.44443 1.02620 1.15279 1.70799 1.19557 0.94210 0.89201 1.36235 0.90536 1.25661 1.01117 0.97321 1.00825 1.70331 1.44676 1.05338 1.37380 0.85350 0.78793 0.77572 0.79432 1.21528 1.22646 1.18714 1.21032 0.98424 0.84834 0.94112 1.22122 0.92331 0.99003 1.02421 1.21968 0.99972 0.90524 0.88055 1.21988 0.88147 0.94917 0.98851 0.94692 1.21849 1.02727 0.99670 0.95635 0.91951 0.91296 0.93013 0.88926 0.95538 0.95858 0.87727 0.90202 0.94833 0.90688 0.75473 0.92809 0.91897 0.94028 0.99299 0.92801 0.94169 0.97103 0.91125 0.89241 0.90430 0.89897 0.89034 0.90640 0.91353 0.91075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.85 71.98 0.71 -0.55 16 2 C 0.05 0.47 5.38 86.30 0.46 0.93 16 3 N -0.53 -7.05 3.98 -869.91 -3.47 -10.52 16 4 C 0.05 0.90 4.85 86.39 0.42 1.31 16 5 C 0.15 3.37 3.20 44.96 0.14 3.51 16 6 H 0.07 2.03 7.10 -2.39 -0.02 2.01 16 7 C -0.14 -2.64 9.22 71.98 0.66 -1.97 16 8 N -0.62 -14.83 2.71 -811.96 -2.20 -17.03 16 9 C 0.70 22.56 8.27 179.05 1.48 24.04 16 10 O -0.64 -26.90 15.45 -3.98 -0.06 -26.96 16 11 N -0.73 -20.67 4.98 -457.69 -2.28 -22.95 16 12 C 0.18 6.36 2.45 45.02 0.11 6.47 16 13 C -0.13 -5.28 5.65 30.67 0.17 -5.10 16 14 C 0.18 9.29 5.44 86.36 0.47 9.76 16 15 N -0.61 -30.86 3.01 -699.08 -2.11 -32.96 16 16 C -0.26 -14.42 9.57 84.03 0.80 -13.62 16 17 H 0.08 4.02 7.93 -2.92 -0.02 4.00 16 18 C -0.05 -3.04 4.66 84.86 0.40 -2.65 16 19 N -0.93 -57.01 11.53 21.65 0.25 -56.76 16 20 Si 0.96 45.18 29.64 68.60 2.03 47.21 16 21 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 22 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 23 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 24 C 0.14 5.74 6.51 86.37 0.56 6.31 16 25 C -0.12 -3.72 5.55 30.68 0.17 -3.55 16 26 C 0.12 1.89 5.48 86.35 0.47 2.36 16 27 C 0.07 0.92 2.61 44.98 0.12 1.04 16 28 H 0.04 0.55 8.14 -2.39 -0.02 0.53 16 29 C -0.14 -1.16 8.42 71.98 0.61 -0.55 16 30 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.05 0.48 6.41 -2.39 -0.02 0.47 16 33 H 0.09 0.75 5.83 -2.38 -0.01 0.74 16 34 H 0.03 0.30 8.12 -2.39 -0.02 0.28 16 35 H 0.02 0.45 8.14 -2.39 -0.02 0.43 16 36 H 0.10 1.39 6.18 -2.39 -0.01 1.38 16 37 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 38 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.07 1.31 7.09 -2.39 -0.02 1.29 16 40 H 0.41 8.62 6.12 -92.71 -0.57 8.05 16 41 H 0.05 2.25 7.51 -2.39 -0.02 2.23 16 42 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 43 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 44 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 45 H 0.05 3.10 5.98 -2.39 -0.01 3.09 16 46 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 47 H 0.01 0.46 8.14 -2.38 -0.02 0.44 16 48 H 0.07 2.68 7.91 -2.39 -0.02 2.66 16 49 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 50 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 51 H 0.08 1.27 7.62 -2.38 -0.02 1.26 16 52 H 0.09 1.23 5.62 -2.39 -0.01 1.22 16 53 H 0.07 0.50 8.12 -2.38 -0.02 0.48 16 54 H 0.07 0.47 6.68 -2.39 -0.02 0.45 16 55 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 Total: -1.00 -73.05 408.14 0.23 -72.82 By element: Atomic # 1 Polarization: 19.14 SS G_CDS: 0.29 Total: 19.44 kcal Atomic # 6 Polarization: 19.96 SS G_CDS: 7.76 Total: 27.72 kcal Atomic # 7 Polarization: -130.42 SS G_CDS: -9.80 Total: -140.22 kcal Atomic # 8 Polarization: -26.90 SS G_CDS: -0.06 Total: -26.96 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -73.05 0.23 -72.82 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611222505.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.134 kcal (2) G-P(sol) polarization free energy of solvation -73.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds