Wall clock time and date at job start Tue Mar 31 2020 22:24:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46499 * 119.99623 * 2 1 4 4 C 1.53007 * 109.46722 * 90.00580 * 3 2 1 5 5 C 1.53000 * 109.46729 * 179.97438 * 4 3 2 6 6 N 1.46907 * 109.46740 * 180.02562 * 5 4 3 7 7 C 1.48528 * 111.00039 * 52.60102 * 6 5 4 8 8 C 1.54943 * 103.22810 * 159.71679 * 7 6 5 9 9 C 1.54597 * 102.92244 * 322.59040 * 8 7 6 10 10 C 1.47906 * 110.99769 * 169.99787 * 6 5 4 11 11 C 1.34778 * 120.00174 * 180.02562 * 2 1 3 12 12 O 1.21582 * 119.99872 * 179.97438 * 11 2 1 13 13 N 1.34775 * 119.99464 * 359.97438 * 11 2 1 14 14 C 1.46506 * 119.99390 * 180.02562 * 13 11 2 15 15 C 1.53044 * 109.45811 * 275.02315 * 14 13 11 16 16 C 1.53190 * 109.30846 * 178.60229 * 15 14 13 17 17 N 1.46927 * 108.76787 * 54.65698 * 16 15 14 18 18 C 1.36938 * 120.63106 * 126.40058 * 17 16 15 19 19 H 1.07998 * 119.99883 * 331.83358 * 18 17 16 20 20 C 1.38809 * 119.99945 * 151.82502 * 18 17 16 21 21 N 1.31626 * 120.00251 * 343.07784 * 20 18 17 22 22 Si 1.86798 * 119.99916 * 163.07087 * 20 18 17 23 23 H 1.48503 * 109.47068 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.47445 * 120.00434 * 22 20 18 25 25 H 1.48502 * 109.47200 * 240.00312 * 22 20 18 26 26 C 1.46923 * 118.73969 * 306.38139 * 17 16 15 27 27 C 1.53043 * 109.45829 * 154.96866 * 14 13 11 28 28 H 1.08997 * 109.47073 * 89.99822 * 1 2 3 29 29 H 1.08996 * 109.46551 * 209.99788 * 1 2 3 30 30 H 1.09005 * 109.46763 * 329.99224 * 1 2 3 31 31 H 1.08997 * 109.47143 * 210.00119 * 3 2 1 32 32 H 1.08997 * 109.47789 * 330.00682 * 3 2 1 33 33 H 1.08997 * 109.46935 * 299.99666 * 4 3 2 34 34 H 1.08999 * 109.47269 * 59.99947 * 4 3 2 35 35 H 1.09007 * 109.47056 * 299.99665 * 5 4 3 36 36 H 1.08997 * 109.47726 * 60.00136 * 5 4 3 37 37 H 1.09003 * 110.67072 * 278.15545 * 7 6 5 38 38 H 1.09001 * 110.66765 * 41.28787 * 7 6 5 39 39 H 1.08996 * 110.72707 * 204.22640 * 8 7 6 40 40 H 1.09004 * 110.71639 * 80.94665 * 8 7 6 41 41 H 1.09001 * 110.30689 * 263.03973 * 9 8 7 42 42 H 1.08989 * 110.30979 * 140.86874 * 9 8 7 43 43 H 1.09002 * 109.91809 * 333.50718 * 10 6 5 44 44 H 1.08996 * 109.91722 * 94.60555 * 10 6 5 45 45 H 0.96994 * 120.00708 * 359.97438 * 13 11 2 46 46 H 1.08994 * 109.46116 * 34.99664 * 14 13 11 47 47 H 1.09001 * 109.49764 * 298.56700 * 15 14 13 48 48 H 1.08991 * 109.49414 * 58.66702 * 15 14 13 49 49 H 1.09006 * 109.60250 * 294.86703 * 16 15 14 50 50 H 1.09003 * 109.70372 * 174.51136 * 16 15 14 51 51 H 0.96996 * 119.99929 * 179.97438 * 21 20 18 52 52 H 1.08998 * 109.58729 * 293.82504 * 26 17 16 53 53 H 1.08994 * 109.70506 * 173.46472 * 26 17 16 54 54 H 1.08990 * 109.50161 * 301.33572 * 27 14 13 55 55 H 1.08999 * 109.49505 * 61.43849 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4526 1.7103 1.4426 5 6 3.2180 3.0351 1.4426 6 7 3.4635 3.4587 2.8277 7 6 4.1090 2.3735 3.6098 8 6 4.7511 3.1285 4.8007 9 6 5.2460 4.4414 4.1515 10 6 4.4010 4.6018 2.8741 11 6 2.1390 -1.1672 -0.0005 12 8 3.3548 -1.1671 -0.0010 13 7 1.4651 -2.3343 -0.0005 14 6 2.1976 -3.6031 -0.0005 15 6 2.5620 -3.9814 -1.4380 16 6 3.3579 -5.2903 -1.4311 17 7 2.5807 -6.3124 -0.7169 18 6 2.3082 -7.5188 -1.3047 19 1 2.2375 -7.5919 -2.3798 20 6 2.1230 -8.6477 -0.5185 21 7 2.5266 -8.6508 0.7343 22 14 1.3007 -10.1626 -1.2385 23 1 0.9432 -9.9049 -2.6567 24 1 2.2346 -11.3148 -1.1654 25 1 0.0708 -10.4726 -0.4661 26 6 2.1019 -6.0156 0.6400 27 6 1.3203 -4.6984 0.6100 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3632 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5140 31 1 3.1499 1.1385 -0.5138 32 1 1.6084 2.0285 -0.5137 33 1 1.5002 1.8406 1.9564 34 1 3.0417 0.9507 1.9563 35 1 4.1705 2.9043 0.9288 36 1 2.6293 3.7950 0.9288 37 1 3.3654 1.6591 3.9630 38 1 4.8730 1.8728 3.0150 39 1 5.5870 2.5621 5.2110 40 1 4.0086 3.3354 5.5716 41 1 6.3033 4.3630 3.8982 42 1 5.0785 5.2825 4.8239 43 1 5.0477 4.5874 1.9968 44 1 3.8437 5.5378 2.9091 45 1 0.4951 -2.3344 0.0002 46 1 3.1083 -3.4966 0.5889 47 1 1.6509 -4.1125 -2.0218 48 1 3.1673 -3.1901 -1.8801 49 1 4.3110 -5.1361 -0.9250 50 1 3.5370 -5.6169 -2.4555 51 1 2.3968 -9.4396 1.2837 52 1 2.9524 -5.9205 1.3150 53 1 1.4506 -6.8192 0.9838 54 1 1.0417 -4.4175 1.6256 55 1 0.4211 -4.8227 0.0067 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619588380.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:09 Heat of formation + Delta-G solvation = -24.403017 kcal Electronic energy + Delta-G solvation = -30125.022604 eV Core-core repulsion = 26196.439476 eV Total energy + Delta-G solvation = -3928.583129 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.39244 -39.96184 -39.19101 -36.99991 -36.02265 -34.71020 -33.73208 -31.88559 -31.41941 -30.65514 -29.78037 -27.76251 -27.08430 -25.73005 -23.96419 -23.75198 -23.08267 -21.74049 -21.36239 -21.17138 -20.67331 -19.21503 -18.50454 -17.65752 -17.09008 -16.93058 -16.69374 -16.57905 -16.06695 -15.79314 -15.39663 -15.31562 -15.11954 -14.82185 -14.75383 -14.64424 -14.07948 -14.04864 -13.96751 -13.79996 -13.43177 -13.24421 -13.19103 -13.02512 -12.80449 -12.62121 -12.47619 -12.42124 -12.30238 -12.21691 -12.14376 -12.03022 -11.98658 -11.87828 -11.63420 -11.55113 -11.43227 -11.37605 -11.14317 -10.57049 -10.12170 -9.51114 -9.43032 -8.71636 -7.88077 -5.34044 1.47580 1.49409 1.60411 1.65917 2.15546 2.51784 2.93358 3.06916 3.28299 3.65205 3.69084 3.75538 3.88336 3.95283 4.03075 4.06594 4.19041 4.24559 4.30797 4.33263 4.35047 4.42843 4.45587 4.58031 4.63357 4.64474 4.66698 4.69520 4.79159 4.80874 4.84105 4.87852 4.91694 4.93245 4.98327 5.03340 5.05604 5.07831 5.14910 5.17994 5.21256 5.28405 5.29374 5.45794 5.57475 5.61522 5.64525 5.70224 5.88400 5.96357 6.05520 6.38711 7.00464 7.13939 7.59514 7.83085 8.36620 9.19308 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.020945 B = 0.001957 C = 0.001872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.543266 B =14303.598139 C =14953.808314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.631 5.631 3 C 0.136 3.864 4 C -0.122 4.122 5 C 0.054 3.946 6 N -0.526 5.526 7 C 0.032 3.968 8 C -0.124 4.124 9 C -0.130 4.130 10 C 0.031 3.969 11 C 0.697 3.303 12 O -0.636 6.636 13 N -0.727 5.727 14 C 0.181 3.819 15 C -0.122 4.122 16 C 0.145 3.855 17 N -0.608 5.608 18 C -0.262 4.262 19 H 0.068 0.932 20 C -0.051 4.051 21 N -0.936 5.936 22 Si 0.970 3.030 23 H -0.266 1.266 24 H -0.294 1.294 25 H -0.287 1.287 26 C 0.179 3.821 27 C -0.127 4.127 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.097 0.903 31 H 0.058 0.942 32 H 0.110 0.890 33 H 0.077 0.923 34 H 0.037 0.963 35 H 0.028 0.972 36 H 0.096 0.904 37 H 0.073 0.927 38 H 0.030 0.970 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.070 0.930 42 H 0.084 0.916 43 H 0.044 0.956 44 H 0.088 0.912 45 H 0.408 0.592 46 H 0.052 0.948 47 H 0.066 0.934 48 H 0.055 0.945 49 H 0.005 0.995 50 H 0.058 0.942 51 H 0.251 0.749 52 H -0.007 1.007 53 H 0.065 0.935 54 H 0.075 0.925 55 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.902 28.805 3.307 29.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.368 5.368 3 C 0.012 3.988 4 C -0.161 4.161 5 C -0.075 4.075 6 N -0.250 5.250 7 C -0.096 4.096 8 C -0.162 4.162 9 C -0.168 4.168 10 C -0.097 4.097 11 C 0.398 3.602 12 O -0.517 6.517 13 N -0.383 5.383 14 C 0.076 3.924 15 C -0.162 4.162 16 C 0.019 3.981 17 N -0.332 5.332 18 C -0.392 4.392 19 H 0.086 0.914 20 C -0.247 4.247 21 N -0.582 5.582 22 Si 0.798 3.202 23 H -0.190 1.190 24 H -0.222 1.222 25 H -0.214 1.214 26 C 0.053 3.947 27 C -0.167 4.167 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.115 0.885 31 H 0.077 0.923 32 H 0.128 0.872 33 H 0.096 0.904 34 H 0.056 0.944 35 H 0.046 0.954 36 H 0.114 0.886 37 H 0.091 0.909 38 H 0.049 0.951 39 H 0.094 0.906 40 H 0.096 0.904 41 H 0.088 0.912 42 H 0.103 0.897 43 H 0.062 0.938 44 H 0.107 0.893 45 H 0.246 0.754 46 H 0.070 0.930 47 H 0.085 0.915 48 H 0.074 0.926 49 H 0.023 0.977 50 H 0.076 0.924 51 H 0.060 0.940 52 H 0.011 0.989 53 H 0.083 0.917 54 H 0.093 0.907 55 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.574 28.836 3.594 29.416 hybrid contribution 0.497 -1.553 -0.468 1.696 sum -4.077 27.283 3.126 27.762 Atomic orbital electron populations 1.21985 0.77331 1.04477 1.03078 1.47106 1.07868 1.04053 1.77759 1.21324 0.97259 0.83707 0.96460 1.21882 1.00983 0.95932 0.97342 1.22213 0.99010 0.96913 0.89357 1.64844 1.42332 1.05857 1.11993 1.23210 0.96866 0.94460 0.95089 1.22505 1.00474 0.96093 0.97148 1.22414 0.99378 0.98388 0.96579 1.22961 0.93796 0.95157 0.97743 1.16163 0.84974 0.81433 0.77607 1.90877 1.13843 1.86959 1.60058 1.45294 1.10199 1.03807 1.79029 1.20475 0.94465 0.81446 0.96060 1.22164 1.00453 0.96908 0.96689 1.20960 0.92323 0.88754 0.96079 1.44354 1.60526 1.13361 1.14953 1.19554 1.41899 0.85835 0.91885 0.91439 1.25845 1.01564 1.00200 0.97060 1.70197 1.49486 1.29683 1.08858 0.85169 0.77668 0.79078 0.78271 1.19040 1.22169 1.21361 1.20556 0.95020 0.93894 0.85234 1.22251 0.98849 0.94873 1.00681 0.91232 0.90958 0.88477 0.92329 0.87168 0.90421 0.94375 0.95375 0.88593 0.90893 0.95144 0.90574 0.90441 0.91171 0.89701 0.93795 0.89344 0.75448 0.92987 0.91525 0.92595 0.97682 0.92350 0.94005 0.98882 0.91706 0.90656 0.91018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.88 10.20 127.77 1.30 2.18 16 2 N -0.63 -13.26 2.87 -864.90 -2.49 -15.74 16 3 C 0.14 2.49 5.41 86.38 0.47 2.96 16 4 C -0.12 -2.25 5.20 30.60 0.16 -2.09 16 5 C 0.05 0.87 5.03 86.30 0.43 1.30 16 6 N -0.53 -9.12 5.40 -882.97 -4.76 -13.89 16 7 C 0.03 0.60 5.10 86.65 0.44 1.04 16 8 C -0.12 -1.82 7.06 31.80 0.22 -1.60 16 9 C -0.13 -1.60 6.93 31.47 0.22 -1.38 16 10 C 0.03 0.43 6.70 86.45 0.58 1.01 16 11 C 0.70 21.20 8.24 179.05 1.48 22.68 16 12 O -0.64 -25.42 15.58 -3.97 -0.06 -25.48 16 13 N -0.73 -20.46 4.94 -457.67 -2.26 -22.72 16 14 C 0.18 6.45 2.42 45.02 0.11 6.55 16 15 C -0.12 -4.54 5.65 30.67 0.17 -4.37 16 16 C 0.15 6.47 6.52 86.36 0.56 7.04 16 17 N -0.61 -31.20 2.99 -699.10 -2.09 -33.29 16 18 C -0.26 -14.48 9.58 84.03 0.81 -13.68 16 19 H 0.07 3.64 7.88 -2.91 -0.02 3.62 16 20 C -0.05 -2.88 4.92 84.86 0.42 -2.46 16 21 N -0.94 -55.58 11.19 21.65 0.24 -55.34 16 22 Si 0.97 44.69 29.59 68.60 2.03 46.72 16 23 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 24 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 25 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 26 C 0.18 8.70 5.30 86.36 0.46 9.16 16 27 C -0.13 -4.61 5.55 30.67 0.17 -4.44 16 28 H 0.07 0.68 8.14 -2.39 -0.02 0.67 16 29 H 0.07 0.81 6.36 -2.39 -0.02 0.80 16 30 H 0.10 0.74 8.07 -2.38 -0.02 0.72 16 31 H 0.06 1.39 7.42 -2.39 -0.02 1.37 16 32 H 0.11 1.24 8.07 -2.39 -0.02 1.22 16 33 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.04 0.96 6.79 -2.39 -0.02 0.94 16 35 H 0.03 0.51 7.81 -2.38 -0.02 0.49 16 36 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.07 1.48 7.66 -2.39 -0.02 1.47 16 38 H 0.03 0.67 8.00 -2.39 -0.02 0.65 16 39 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.04 0.61 7.57 -2.39 -0.02 0.60 16 44 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 45 H 0.41 8.74 6.33 -92.71 -0.59 8.16 16 46 H 0.05 2.18 7.58 -2.39 -0.02 2.16 16 47 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 48 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 49 H 0.01 0.25 8.14 -2.38 -0.02 0.23 16 50 H 0.06 2.52 7.93 -2.39 -0.02 2.50 16 51 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 52 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 53 H 0.06 3.49 6.06 -2.39 -0.01 3.48 16 54 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 55 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 Total: -1.00 -72.28 419.54 -1.14 -73.42 By element: Atomic # 1 Polarization: 22.16 SS G_CDS: 0.25 Total: 22.41 kcal Atomic # 6 Polarization: 15.91 SS G_CDS: 8.00 Total: 23.91 kcal Atomic # 7 Polarization: -129.62 SS G_CDS: -11.36 Total: -140.98 kcal Atomic # 8 Polarization: -25.42 SS G_CDS: -0.06 Total: -25.48 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -72.28 -1.14 -73.42 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619588380.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.014 kcal (2) G-P(sol) polarization free energy of solvation -72.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds