Wall clock time and date at job start Tue Mar 31 2020 22:42:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31411 * 1
3 3 Si 1.86806 * 120.00155 * 2 1
4 4 H 1.48498 * 109.47514 * 179.97438 * 3 2 1
5 5 H 1.48504 * 109.46914 * 300.00119 * 3 2 1
6 6 H 1.48498 * 109.47071 * 59.99410 * 3 2 1
7 7 C 1.38953 * 120.00268 * 179.97438 * 2 1 3
8 8 H 1.07995 * 119.99955 * 180.02562 * 7 2 1
9 9 N 1.37091 * 119.99712 * 0.02562 * 7 2 1
10 10 C 1.34777 * 120.00108 * 179.97438 * 9 7 2
11 11 O 1.21286 * 119.99822 * 0.02562 * 10 9 7
12 12 C 1.50703 * 120.00161 * 180.02562 * 10 9 7
13 13 S 1.81002 * 109.47178 * 180.02562 * 12 10 9
14 14 C 1.76198 * 100.00092 * 180.02562 * 13 12 10
15 15 N 1.28979 * 124.82021 * 359.70299 * 14 13 12
16 16 C 1.34782 * 117.86409 * 179.77651 * 15 14 13
17 17 C 1.41107 * 128.72652 * 180.16954 * 16 15 14
18 18 C 1.37207 * 120.43649 * 180.32318 * 17 16 15
19 19 C 1.38710 * 120.59714 * 0.02562 * 18 17 16
20 20 N 1.48026 * 120.01265 * 179.97438 * 19 18 17
21 21 O 1.21799 * 119.99896 * 180.02562 * 20 19 18
22 22 O 1.21798 * 119.99977 * 0.02571 * 20 19 18
23 23 C 1.37731 * 119.97636 * 359.97438 * 19 18 17
24 24 C 1.39250 * 120.20923 * 0.02562 * 23 19 18
25 25 S 1.75799 * 124.82257 * 180.02562 * 14 13 12
26 26 H 0.96996 * 119.99832 * 0.02562 * 1 2 3
27 27 H 0.97005 * 120.00430 * 0.02562 * 9 7 2
28 28 H 1.09002 * 109.47152 * 60.00245 * 12 10 9
29 29 H 1.09001 * 109.46980 * 300.00345 * 12 10 9
30 30 H 1.08000 * 119.78044 * 0.29890 * 17 16 15
31 31 H 1.08002 * 119.70312 * 179.97438 * 18 17 16
32 32 H 1.08004 * 119.89601 * 180.02562 * 23 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3141 0.0000 0.0000
3 14 2.2482 1.6178 0.0000
4 1 3.7082 1.3465 0.0006
5 1 1.8894 2.3965 -1.2125
6 1 1.8893 2.3965 1.2124
7 6 2.0089 -1.2033 0.0005
8 1 3.0889 -1.2033 0.0010
9 7 1.3235 -2.3906 0.0005
10 6 1.9973 -3.5578 0.0005
11 8 3.2102 -3.5578 0.0010
12 6 1.2438 -4.8629 0.0000
13 16 2.4200 -6.2387 0.0009
14 6 1.3000 -7.5988 -0.0008
15 7 0.0144 -7.4943 0.0033
16 6 -0.7101 -8.6308 -0.0033
17 6 -2.1128 -8.7835 -0.0041
18 6 -2.6758 -10.0347 -0.0048
19 6 -1.8767 -11.1685 -0.0041
20 7 -2.4978 -12.5122 -0.0042
21 8 -1.7959 -13.5075 -0.0032
22 8 -3.7108 -12.6223 -0.0054
23 6 -0.5051 -11.0436 -0.0033
24 6 0.0836 -9.7817 -0.0027
25 16 1.7759 -9.2912 -0.0001
26 1 -0.4850 0.8400 -0.0004
27 1 0.3534 -2.3906 -0.0002
28 1 0.6175 -4.9205 -0.8903
29 1 0.6168 -4.9208 0.8897
30 1 -2.7475 -7.9097 -0.0038
31 1 -3.7509 -10.1378 -0.0049
32 1 0.1159 -11.9273 -0.0033
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000731156674.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:42:18
Heat of formation + Delta-G solvation = 19.138017 kcal
Electronic energy + Delta-G solvation = -22196.952995 eV
Core-core repulsion = 18378.879555 eV
Total energy + Delta-G solvation = -3818.073440 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 339.018 amu
Computer time = 0.43 seconds
Orbital eigenvalues (eV)
-42.49171 -40.74327 -38.40959 -37.39076 -36.86640 -34.25890 -32.01457 -31.64024
-31.30549 -29.54200 -27.18939 -24.92722 -24.86674 -23.81988 -22.11153 -20.16152
-19.86203 -19.07318 -18.58242 -18.16794 -17.83709 -17.56371 -16.38892 -16.18243
-15.66826 -15.54164 -14.75715 -14.74014 -14.69756 -14.26038 -14.13401 -13.50478
-13.25677 -12.99219 -12.71459 -12.23934 -11.89459 -11.72844 -11.60430 -11.53640
-11.43558 -11.23766 -10.85788 -10.84880 -10.50748 -10.42145 -10.22755 -10.05881
-9.77970 -8.86690 -8.85624 -8.25886 -7.87338 -6.64876 -4.07214 -0.89524
0.26718 0.29467 0.46015 0.93289 1.06882 1.25695 1.61053 1.95316
2.84783 3.00699 3.15348 3.21961 3.53870 3.59247 3.86177 3.98573
4.09992 4.22033 4.48117 4.59331 4.91171 4.98431 5.02655 5.23640
5.33776 5.37799 5.52561 5.63061 5.90993 6.04525 6.84813 7.32594
7.34254 7.76375 8.27681 8.90309 9.21805 9.69073 10.51735
Molecular weight = 339.02amu
Principal moments of inertia in cm(-1)
A = 0.025904 B = 0.002132 C = 0.001972
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1080.663741 B =13131.483822 C =14197.002803
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.892 5.892
2 C 0.027 3.973
3 Si 0.934 3.066
4 H -0.266 1.266
5 H -0.279 1.279
6 H -0.279 1.279
7 C -0.306 4.306
8 H 0.108 0.892
9 N -0.541 5.541
10 C 0.444 3.556
11 O -0.585 6.585
12 C -0.137 4.137
13 S 0.128 5.872
14 C 0.093 3.907
15 N -0.486 5.486
16 C 0.157 3.843
17 C -0.067 4.067
18 C -0.051 4.051
19 C -0.048 4.048
20 N 0.035 4.965
21 O -0.165 6.165
22 O -0.156 6.156
23 C 0.016 3.984
24 C -0.207 4.207
25 S 0.142 5.858
26 H 0.275 0.725
27 H 0.396 0.604
28 H 0.114 0.886
29 H 0.114 0.886
30 H 0.159 0.841
31 H 0.163 0.837
32 H 0.159 0.841
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.886 -18.768 -0.018 19.167
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.532 5.532
2 C -0.176 4.176
3 Si 0.760 3.240
4 H -0.190 1.190
5 H -0.205 1.205
6 H -0.205 1.205
7 C -0.435 4.435
8 H 0.126 0.874
9 N -0.176 5.176
10 C 0.228 3.772
11 O -0.472 6.472
12 C -0.290 4.290
13 S 0.363 5.637
14 C -0.296 4.296
15 N -0.206 5.206
16 C 0.029 3.971
17 C -0.090 4.090
18 C -0.074 4.074
19 C -0.135 4.135
20 N 0.553 4.447
21 O -0.379 6.379
22 O -0.372 6.372
23 C -0.007 4.007
24 C -0.329 4.329
25 S 0.396 5.604
26 H 0.085 0.915
27 H 0.230 0.770
28 H 0.132 0.868
29 H 0.132 0.868
30 H 0.177 0.823
31 H 0.180 0.820
32 H 0.176 0.824
Dipole moment (debyes) X Y Z Total
from point charges -0.791 -17.764 -0.006 17.781
hybrid contribution -2.791 0.422 -0.008 2.823
sum -3.582 -17.342 -0.014 17.708
Atomic orbital electron populations
1.69614 1.06077 1.28662 1.48860 1.25360 0.95701 1.00064 0.96488
0.85731 0.79754 0.80549 0.77942 1.18988 1.20490 1.20496 1.19820
0.93587 0.81715 1.48390 0.87392 1.41751 1.09489 1.04204 1.62128
1.18844 0.87839 0.83733 0.86770 1.90575 1.13119 1.86314 1.57201
1.23889 1.01510 0.95417 1.08234 1.86697 1.02071 0.89619 1.85292
1.30288 0.97356 1.03325 0.98609 1.67185 1.03372 1.28247 1.21777
1.19597 0.95279 0.85984 0.96219 1.20653 0.91022 0.97520 0.99772
1.20686 1.01702 0.89253 0.95769 1.20741 0.93025 0.82872 1.16862
1.43438 1.01020 1.02720 0.97475 1.94551 1.61985 1.27623 1.53735
1.94548 0.96211 1.93181 1.53289 1.19975 0.92276 0.96684 0.91782
1.23490 0.98347 0.97374 1.13720 1.85132 1.00778 0.99235 1.75270
0.91478 0.76992 0.86780 0.86776 0.82304 0.81965 0.82375
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -22.83 13.05 55.50 0.72 -22.11 16
2 C 0.03 0.69 5.50 -17.47 -0.10 0.59 16
3 Si 0.93 19.78 29.55 -169.99 -5.02 14.75 16
4 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16
5 H -0.28 -5.84 7.11 56.52 0.40 -5.43 16
6 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16
7 C -0.31 -7.96 9.68 -14.94 -0.14 -8.11 16
8 H 0.11 2.95 7.16 -52.49 -0.38 2.57 16
9 N -0.54 -12.70 5.29 -10.97 -0.06 -12.76 16
10 C 0.44 9.59 7.80 -10.98 -0.09 9.50 16
11 O -0.59 -14.54 15.44 5.55 0.09 -14.45 16
12 C -0.14 -2.19 5.62 36.01 0.20 -1.99 16
13 S 0.13 1.83 21.44 -107.50 -2.31 -0.47 16
14 C 0.09 1.17 7.64 51.56 0.39 1.56 16
15 N -0.49 -6.21 9.83 -10.59 -0.10 -6.32 16
16 C 0.16 1.75 6.94 -84.90 -0.59 1.16 16
17 C -0.07 -0.59 10.10 -38.87 -0.39 -0.98 16
18 C -0.05 -0.42 9.51 -39.78 -0.38 -0.80 16
19 C -0.05 -0.46 6.85 -79.95 -0.55 -1.01 16
20 N 0.03 0.39 4.45 33.96 0.15 0.54 16
21 O -0.16 -1.97 18.44 -29.46 -0.54 -2.51 16
22 O -0.16 -1.83 18.45 -29.46 -0.54 -2.38 16
23 C 0.02 0.15 9.57 -39.39 -0.38 -0.23 16
24 C -0.21 -2.12 6.52 -38.62 -0.25 -2.37 16
25 S 0.14 1.42 23.38 -107.50 -2.51 -1.09 16
26 H 0.28 6.64 8.31 -40.82 -0.34 6.30 16
27 H 0.40 8.85 7.90 -40.82 -0.32 8.53 16
28 H 0.11 1.67 8.14 -51.92 -0.42 1.25 16
29 H 0.11 1.67 8.14 -51.91 -0.42 1.25 16
30 H 0.16 1.09 8.06 -52.49 -0.42 0.67 16
31 H 0.16 0.99 7.60 -52.49 -0.40 0.59 16
32 H 0.16 1.19 7.60 -52.48 -0.40 0.79 16
LS Contribution 329.27 15.07 4.96 4.96
Total: -1.00 -29.32 329.27 -9.33 -38.66
By element:
Atomic # 1 Polarization: 7.75 SS G_CDS: -1.90 Total: 5.85 kcal
Atomic # 6 Polarization: -0.40 SS G_CDS: -2.27 Total: -2.67 kcal
Atomic # 7 Polarization: -41.36 SS G_CDS: 0.71 Total: -40.65 kcal
Atomic # 8 Polarization: -18.34 SS G_CDS: -1.00 Total: -19.34 kcal
Atomic # 14 Polarization: 19.78 SS G_CDS: -5.02 Total: 14.75 kcal
Atomic # 16 Polarization: 3.26 SS G_CDS: -4.82 Total: -1.56 kcal
Total LS contribution 4.96 Total: 4.96 kcal
Total: -29.32 -9.33 -38.66 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000731156674.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 57.794 kcal
(2) G-P(sol) polarization free energy of solvation -29.323 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.471 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.333 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.656 kcal
(6) G-S(sol) free energy of system = (1) + (5) 19.138 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.43 seconds