Wall clock time and date at job start Tue Mar 31 2020 22:42:16
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31411 * 1
3 3 Si 1.86806 * 120.00155 * 2 1
4 4 H 1.48498 * 109.47514 * 179.97438 * 3 2 1
5 5 H 1.48504 * 109.46914 * 300.00119 * 3 2 1
6 6 H 1.48498 * 109.47071 * 59.99410 * 3 2 1
7 7 C 1.38953 * 120.00268 * 179.97438 * 2 1 3
8 8 H 1.07995 * 119.99955 * 180.02562 * 7 2 1
9 9 N 1.37091 * 119.99712 * 0.02562 * 7 2 1
10 10 C 1.34777 * 120.00108 * 179.97438 * 9 7 2
11 11 O 1.21286 * 119.99822 * 0.02562 * 10 9 7
12 12 C 1.50703 * 120.00161 * 180.02562 * 10 9 7
13 13 S 1.81002 * 109.47178 * 180.02562 * 12 10 9
14 14 C 1.76198 * 100.00092 * 180.02562 * 13 12 10
15 15 N 1.28979 * 124.82021 * 359.70299 * 14 13 12
16 16 C 1.34782 * 117.86409 * 179.77651 * 15 14 13
17 17 C 1.41107 * 128.72652 * 180.16954 * 16 15 14
18 18 C 1.37207 * 120.43649 * 180.32318 * 17 16 15
19 19 C 1.38710 * 120.59714 * 0.02562 * 18 17 16
20 20 N 1.48026 * 120.01265 * 179.97438 * 19 18 17
21 21 O 1.21799 * 119.99896 * 180.02562 * 20 19 18
22 22 O 1.21798 * 119.99977 * 0.02571 * 20 19 18
23 23 C 1.37731 * 119.97636 * 359.97438 * 19 18 17
24 24 C 1.39250 * 120.20923 * 0.02562 * 23 19 18
25 25 S 1.75799 * 124.82257 * 180.02562 * 14 13 12
26 26 H 0.96996 * 119.99832 * 0.02562 * 1 2 3
27 27 H 0.97005 * 120.00430 * 0.02562 * 9 7 2
28 28 H 1.09002 * 109.47152 * 60.00245 * 12 10 9
29 29 H 1.09001 * 109.46980 * 300.00345 * 12 10 9
30 30 H 1.08000 * 119.78044 * 0.29890 * 17 16 15
31 31 H 1.08002 * 119.70312 * 179.97438 * 18 17 16
32 32 H 1.08004 * 119.89601 * 180.02562 * 23 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3141 0.0000 0.0000
3 14 2.2482 1.6178 0.0000
4 1 3.7082 1.3465 0.0006
5 1 1.8894 2.3965 -1.2125
6 1 1.8893 2.3965 1.2124
7 6 2.0089 -1.2033 0.0005
8 1 3.0889 -1.2033 0.0010
9 7 1.3235 -2.3906 0.0005
10 6 1.9973 -3.5578 0.0005
11 8 3.2102 -3.5578 0.0010
12 6 1.2438 -4.8629 0.0000
13 16 2.4200 -6.2387 0.0009
14 6 1.3000 -7.5988 -0.0008
15 7 0.0144 -7.4943 0.0033
16 6 -0.7101 -8.6308 -0.0033
17 6 -2.1128 -8.7835 -0.0041
18 6 -2.6758 -10.0347 -0.0048
19 6 -1.8767 -11.1685 -0.0041
20 7 -2.4978 -12.5122 -0.0042
21 8 -1.7959 -13.5075 -0.0032
22 8 -3.7108 -12.6223 -0.0054
23 6 -0.5051 -11.0436 -0.0033
24 6 0.0836 -9.7817 -0.0027
25 16 1.7759 -9.2912 -0.0001
26 1 -0.4850 0.8400 -0.0004
27 1 0.3534 -2.3906 -0.0002
28 1 0.6175 -4.9205 -0.8903
29 1 0.6168 -4.9208 0.8897
30 1 -2.7475 -7.9097 -0.0038
31 1 -3.7509 -10.1378 -0.0049
32 1 0.1159 -11.9273 -0.0033
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000731156674.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:42:16
Heat of formation + Delta-G solvation = 1.951101 kcal
Electronic energy + Delta-G solvation = -22197.698276 eV
Core-core repulsion = 18378.879555 eV
Total energy + Delta-G solvation = -3818.818721 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 339.018 amu
Computer time = 1.68 seconds
Orbital eigenvalues (eV)
-43.33888 -41.56317 -40.20660 -38.21799 -37.74464 -36.13951 -33.47993 -32.74150
-32.18467 -31.00254 -28.07021 -26.72009 -25.78082 -24.59852 -22.93778 -21.63629
-20.84187 -20.19352 -19.89903 -19.38885 -18.68193 -18.57951 -17.85897 -17.14175
-16.73718 -16.59793 -16.48413 -16.07845 -15.79559 -15.41934 -14.94949 -14.81091
-14.33320 -14.06272 -14.00906 -13.53487 -13.53098 -12.93990 -12.78799 -12.48183
-12.42650 -12.34658 -12.34065 -12.13903 -11.96502 -11.61766 -11.60648 -11.13921
-10.93348 -10.67710 -10.14364 -9.61452 -8.92977 -8.55111 -6.05039 -1.74104
-0.65810 -0.45961 -0.38467 0.08830 0.15480 0.39196 0.76195 0.77354
1.32463 1.42519 1.56044 1.83961 2.07864 2.25378 2.77372 2.97758
3.11470 3.14301 3.38693 3.47020 3.74323 4.03747 4.10475 4.24292
4.28739 4.36059 4.52386 4.64462 4.92390 5.21554 5.35801 5.85968
5.97280 6.41493 6.42017 6.99583 7.37148 7.88787 8.61754
Molecular weight = 339.02amu
Principal moments of inertia in cm(-1)
A = 0.025904 B = 0.002132 C = 0.001972
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1080.663741 B =13131.483822 C =14197.002803
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.913 5.913
2 C -0.008 4.008
3 Si 0.995 3.005
4 H -0.271 1.271
5 H -0.271 1.271
6 H -0.271 1.271
7 C -0.336 4.336
8 H 0.086 0.914
9 N -0.553 5.553
10 C 0.448 3.552
11 O -0.619 6.619
12 C -0.124 4.124
13 S 0.106 5.894
14 C 0.079 3.921
15 N -0.496 5.496
16 C 0.133 3.867
17 C -0.060 4.060
18 C -0.042 4.042
19 C -0.049 4.049
20 N 0.035 4.965
21 O -0.181 6.181
22 O -0.161 6.161
23 C 0.019 3.981
24 C -0.213 4.213
25 S 0.187 5.813
26 H 0.281 0.719
27 H 0.400 0.600
28 H 0.129 0.871
29 H 0.129 0.871
30 H 0.179 0.821
31 H 0.186 0.814
32 H 0.174 0.826
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.923 -19.716 -0.021 20.322
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.553 5.553
2 C -0.209 4.209
3 Si 0.818 3.182
4 H -0.195 1.195
5 H -0.196 1.196
6 H -0.196 1.196
7 C -0.466 4.466
8 H 0.104 0.896
9 N -0.189 5.189
10 C 0.234 3.766
11 O -0.508 6.508
12 C -0.276 4.276
13 S 0.340 5.660
14 C -0.311 4.311
15 N -0.216 5.216
16 C 0.006 3.994
17 C -0.082 4.082
18 C -0.065 4.065
19 C -0.137 4.137
20 N 0.552 4.448
21 O -0.393 6.393
22 O -0.377 6.377
23 C -0.004 4.004
24 C -0.335 4.335
25 S 0.442 5.558
26 H 0.090 0.910
27 H 0.235 0.765
28 H 0.148 0.852
29 H 0.148 0.852
30 H 0.197 0.803
31 H 0.203 0.797
32 H 0.191 0.809
Dipole moment (debyes) X Y Z Total
from point charges -1.847 -18.757 -0.009 18.848
hybrid contribution -2.539 0.495 -0.007 2.587
sum -4.386 -18.263 -0.015 18.782
Atomic orbital electron populations
1.69666 1.06917 1.29662 1.49081 1.26099 0.96540 1.02580 0.95679
0.84840 0.78169 0.76808 0.78375 1.19510 1.19577 1.19590 1.19768
0.92968 0.83419 1.50413 0.89608 1.41796 1.09615 1.04349 1.63127
1.19665 0.87689 0.85047 0.84228 1.90550 1.15005 1.87339 1.57880
1.23597 1.01293 0.93049 1.09698 1.86692 1.02348 0.89875 1.87077
1.29943 0.97310 1.03832 0.99970 1.67148 1.03627 1.29536 1.21239
1.19870 0.96304 0.85724 0.97456 1.20900 0.90260 0.98406 0.98644
1.20944 1.02750 0.88376 0.94400 1.20893 0.93413 0.82354 1.16996
1.43633 1.00939 1.03165 0.97113 1.94552 1.61942 1.28328 1.54429
1.94541 0.96503 1.93409 1.53294 1.20110 0.92395 0.96838 0.91058
1.23615 0.98584 0.97557 1.13770 1.84986 1.00175 0.96614 1.74061
0.90982 0.76530 0.85244 0.85249 0.80350 0.79690 0.80861
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 62.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -46.70 13.05 21.66 0.28 -46.41 16
2 C -0.01 -0.40 5.50 84.93 0.47 0.07 16
3 Si 0.99 40.56 29.55 68.60 2.03 42.58 16
4 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16
5 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16
6 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16
7 C -0.34 -17.94 9.68 84.04 0.81 -17.13 16
8 H 0.09 4.87 7.16 -2.91 -0.02 4.85 16
9 N -0.55 -26.51 5.29 -306.99 -1.62 -28.13 16
10 C 0.45 19.65 7.80 87.66 0.68 20.33 16
11 O -0.62 -31.54 15.44 -3.05 -0.05 -31.59 16
12 C -0.12 -3.90 5.62 71.24 0.40 -3.50 16
13 S 0.11 3.00 21.44 -56.49 -1.21 1.79 16
14 C 0.08 1.87 7.64 130.66 1.00 2.87 16
15 N -0.50 -11.84 9.83 -187.43 -1.84 -13.69 16
16 C 0.13 2.69 6.94 39.77 0.28 2.96 16
17 C -0.06 -0.88 10.10 22.73 0.23 -0.65 16
18 C -0.04 -0.56 9.51 22.14 0.21 -0.35 16
19 C -0.05 -0.83 6.85 36.37 0.25 -0.58 16
20 N 0.03 0.72 4.45 -46.47 -0.21 0.51 16
21 O -0.18 -4.06 18.44 18.89 0.35 -3.71 16
22 O -0.16 -3.46 18.45 18.89 0.35 -3.12 16
23 C 0.02 0.31 9.57 22.39 0.21 0.52 16
24 C -0.21 -3.90 6.52 22.89 0.15 -3.75 16
25 S 0.19 3.41 23.38 -56.49 -1.32 2.09 16
26 H 0.28 13.38 8.31 -92.71 -0.77 12.61 16
27 H 0.40 18.15 7.90 -92.70 -0.73 17.42 16
28 H 0.13 3.68 8.14 -2.39 -0.02 3.66 16
29 H 0.13 3.68 8.14 -2.39 -0.02 3.66 16
30 H 0.18 1.90 8.06 -2.91 -0.02 1.87 16
31 H 0.19 1.61 7.60 -2.91 -0.02 1.59 16
32 H 0.17 2.18 7.60 -2.91 -0.02 2.16 16
Total: -1.00 -63.21 329.27 1.94 -61.27
By element:
Atomic # 1 Polarization: 17.12 SS G_CDS: 0.49 Total: 17.61 kcal
Atomic # 6 Polarization: -3.89 SS G_CDS: 4.69 Total: 0.80 kcal
Atomic # 7 Polarization: -84.33 SS G_CDS: -3.39 Total: -87.72 kcal
Atomic # 8 Polarization: -39.07 SS G_CDS: 0.65 Total: -38.42 kcal
Atomic # 14 Polarization: 40.56 SS G_CDS: 2.03 Total: 42.58 kcal
Atomic # 16 Polarization: 6.41 SS G_CDS: -2.53 Total: 3.88 kcal
Total: -63.21 1.94 -61.27 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000731156674.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 63.220 kcal
(2) G-P(sol) polarization free energy of solvation -63.206 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.014 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.937 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.269 kcal
(6) G-S(sol) free energy of system = (1) + (5) 1.951 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.68 seconds