Wall clock time and date at job start Tue Mar 31 2020 22:46:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 120.00338 * 2 1 4 4 H 1.48496 * 109.46856 * 239.99941 * 3 2 1 5 5 H 1.48497 * 109.46923 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46952 * 119.99957 * 3 2 1 7 7 C 1.38815 * 119.99419 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99345 * 150.87579 * 7 2 1 9 9 N 1.36930 * 119.99950 * 331.14811 * 7 2 1 10 10 C 1.46499 * 120.00206 * 353.42303 * 9 7 2 11 11 C 1.50706 * 109.46941 * 86.82036 * 10 9 7 12 12 O 1.20824 * 119.99800 * 359.97438 * 11 10 9 13 13 O 1.34226 * 119.99810 * 180.02562 * 11 10 9 14 14 S 1.65603 * 119.99813 * 173.43031 * 9 7 2 15 15 O 1.42103 * 106.40232 * 203.54138 * 14 9 7 16 16 O 1.42099 * 106.40057 * 336.45326 * 14 9 7 17 17 C 1.76197 * 107.22010 * 89.99699 * 14 9 7 18 18 C 1.38243 * 119.97596 * 114.72560 * 17 14 9 19 19 C 1.38361 * 120.02383 * 179.76736 * 18 17 14 20 20 F 1.35098 * 120.01158 * 180.25899 * 19 18 17 21 21 C 1.38688 * 119.97781 * 0.52893 * 19 18 17 22 22 F 1.35099 * 120.02202 * 179.70786 * 21 19 18 23 23 C 1.38356 * 119.95566 * 359.72251 * 21 19 18 24 24 C 1.38424 * 119.97721 * 294.99879 * 17 14 9 25 25 F 1.35096 * 119.98813 * 359.97438 * 24 17 14 26 26 H 0.97012 * 119.99582 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.47326 * 206.81370 * 10 9 7 28 28 H 1.08996 * 109.47135 * 326.81980 * 10 9 7 29 29 H 0.96704 * 116.99680 * 179.97438 * 13 11 10 30 30 H 1.08002 * 119.99073 * 0.02562 * 18 17 14 31 31 H 1.07995 * 120.01019 * 180.02562 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6962 -1.2125 5 1 1.2854 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 2.9878 -1.2612 -0.4558 9 7 1.4529 -2.3147 0.5712 10 6 0.1918 -2.2056 1.3087 11 6 -0.9637 -2.3440 0.3512 12 8 -0.7551 -2.5156 -0.8265 13 8 -2.2245 -2.2755 0.8066 14 16 2.2045 -3.7834 0.4291 15 8 1.1952 -4.7690 0.6003 16 8 3.0247 -3.7041 -0.7286 17 6 3.2965 -3.9456 1.8023 18 6 3.0702 -4.9234 2.7530 19 6 3.9298 -5.0547 3.8292 20 9 3.7114 -6.0138 4.7554 21 6 5.0125 -4.1980 3.9599 22 9 5.8490 -4.3216 5.0136 23 6 5.2352 -3.2163 3.0107 24 6 4.3771 -3.0902 1.9315 25 9 4.5943 -2.1319 1.0044 26 1 -0.4850 0.8402 0.0004 27 1 0.1394 -2.9956 2.0578 28 1 0.1416 -1.2343 1.8008 29 1 -2.9325 -2.3695 0.1545 30 1 2.2245 -5.5877 2.6535 31 1 6.0783 -2.5489 3.1114 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739085040.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:01 Heat of formation + Delta-G solvation = -239.770765 kcal Electronic energy + Delta-G solvation = -28414.898878 eV Core-core repulsion = 23568.695947 eV Total energy + Delta-G solvation = -4846.202930 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 339.027 amu Computer time = 2.63 seconds Orbital eigenvalues (eV) -49.68836 -48.97683 -48.72712 -39.01113 -38.59830 -36.32303 -36.02868 -34.91762 -34.61378 -31.74340 -31.29046 -30.04627 -27.82897 -24.40097 -23.85163 -23.11124 -20.92840 -19.12419 -18.55906 -18.08861 -17.96465 -17.13290 -17.06650 -16.73739 -16.54693 -16.29227 -15.51214 -15.39648 -15.13539 -15.07329 -14.77160 -14.63037 -14.49932 -14.39159 -14.36268 -13.69087 -13.45826 -12.55260 -12.31364 -12.14142 -11.97140 -11.93331 -11.84494 -11.37144 -11.22417 -11.06673 -10.88780 -10.59501 -10.52241 -10.35370 -10.19658 -10.03103 -9.47829 -9.17002 -8.79524 -8.43449 -6.73858 -4.00189 0.34514 0.72343 1.07171 2.87072 3.10081 3.15042 3.17942 3.44614 3.62320 3.72702 3.84627 4.10647 4.19590 4.26045 4.29612 4.48999 4.77247 4.87005 5.10584 5.31545 5.36341 5.57990 5.66234 5.76784 5.83284 6.18098 6.40394 6.51630 6.83848 7.27571 7.61049 8.04786 8.54460 8.91496 9.18759 10.32670 Molecular weight = 339.03amu Principal moments of inertia in cm(-1) A = 0.013428 B = 0.005579 C = 0.004615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.627183 B = 5017.683663 C = 6065.395897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.836 5.836 2 C 0.049 3.951 3 Si 0.910 3.090 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.288 4.288 8 H 0.127 0.873 9 N -0.804 5.804 10 C 0.156 3.844 11 C 0.503 3.497 12 O -0.502 6.502 13 O -0.535 6.535 14 S 2.605 3.395 15 O -0.972 6.972 16 O -0.947 6.947 17 C -0.699 4.699 18 C -0.008 4.008 19 C 0.030 3.970 20 F -0.126 7.126 21 C 0.133 3.867 22 F -0.120 7.120 23 C -0.190 4.190 24 C 0.225 3.775 25 F -0.097 7.097 26 H 0.278 0.722 27 H 0.083 0.917 28 H 0.119 0.881 29 H 0.393 0.607 30 H 0.170 0.830 31 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.862 -3.031 8.427 9.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C -0.161 4.161 3 Si 0.735 3.265 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.195 1.195 7 C -0.427 4.427 8 H 0.144 0.856 9 N -0.633 5.633 10 C 0.028 3.972 11 C 0.342 3.658 12 O -0.387 6.387 13 O -0.346 6.346 14 S 2.693 3.307 15 O -0.961 6.961 16 O -0.936 6.936 17 C -0.775 4.775 18 C -0.028 4.028 19 C 0.009 3.991 20 F -0.104 7.104 21 C 0.112 3.888 22 F -0.098 7.098 23 C -0.210 4.210 24 C 0.204 3.796 25 F -0.075 7.075 26 H 0.089 0.911 27 H 0.101 0.899 28 H 0.137 0.863 29 H 0.250 0.750 30 H 0.187 0.813 31 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 4.134 -3.744 7.877 9.652 hybrid contribution 0.447 1.150 0.509 1.335 sum 4.581 -2.594 8.386 9.901 Atomic orbital electron populations 1.69866 1.06544 1.28666 1.42491 1.25131 0.94945 0.99542 0.96487 0.86244 0.79848 0.80745 0.79679 1.19241 1.20765 1.19456 1.19627 1.04578 0.87010 1.31501 0.85571 1.53500 1.23458 1.27550 1.58790 1.20176 0.81395 1.04520 0.91149 1.23205 0.82482 0.70785 0.89291 1.90578 1.84763 1.44904 1.18410 1.84471 1.17505 1.86542 1.46102 1.07357 0.73610 0.73602 0.76133 1.93450 1.57188 1.58392 1.87109 1.93487 1.68816 1.86017 1.45280 1.32654 1.15442 1.03733 1.25626 1.20748 0.97496 0.95397 0.89128 1.17683 0.98001 0.91780 0.91667 1.91536 1.94438 1.60791 1.63681 1.17364 0.89017 0.96199 0.86203 1.91559 1.69325 1.95090 1.53818 1.21011 1.03626 1.01511 0.94864 1.16650 0.91903 0.85235 0.85815 1.91705 1.93659 1.59573 1.62534 0.91069 0.89916 0.86304 0.75031 0.81264 0.82000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 100. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -19.94 8.85 55.49 0.49 -19.45 16 2 C 0.05 1.14 4.82 -17.43 -0.08 1.06 16 3 Si 0.91 18.16 29.64 -169.99 -5.04 13.12 16 4 H -0.27 -5.44 7.11 56.52 0.40 -5.03 16 5 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 6 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 7 C -0.29 -6.89 8.55 -15.06 -0.13 -7.02 16 8 H 0.13 3.02 6.32 -52.48 -0.33 2.69 16 9 N -0.80 -18.14 2.42 -61.08 -0.15 -18.29 16 10 C 0.16 3.24 5.18 -5.19 -0.03 3.21 16 11 C 0.50 11.23 6.26 36.01 0.23 11.45 16 12 O -0.50 -13.07 16.66 -18.75 -0.31 -13.38 16 13 O -0.54 -9.72 13.42 -39.25 -0.53 -10.25 16 14 S 2.60 56.16 5.25 -107.50 -0.56 55.59 16 15 O -0.97 -21.53 15.97 -57.17 -0.91 -22.44 16 16 O -0.95 -23.13 16.29 -57.17 -0.93 -24.06 16 17 C -0.70 -12.20 5.91 -39.51 -0.23 -12.43 16 18 C -0.01 -0.12 9.52 -39.53 -0.38 -0.50 16 19 C 0.03 0.42 7.31 -39.37 -0.29 0.13 16 20 F -0.13 -1.75 17.18 2.25 0.04 -1.71 16 21 C 0.13 1.80 7.31 -39.37 -0.29 1.51 16 22 F -0.12 -1.55 17.18 2.25 0.04 -1.51 16 23 C -0.19 -2.55 10.00 -39.46 -0.39 -2.94 16 24 C 0.23 3.71 7.21 -39.43 -0.28 3.43 16 25 F -0.10 -1.75 14.36 2.25 0.03 -1.72 16 26 H 0.28 6.30 8.31 -40.81 -0.34 5.96 16 27 H 0.08 1.43 7.68 -51.93 -0.40 1.03 16 28 H 0.12 2.41 6.52 -51.93 -0.34 2.07 16 29 H 0.39 5.51 9.10 45.56 0.41 5.93 16 30 H 0.17 2.31 7.33 -52.49 -0.38 1.93 16 31 H 0.16 1.70 8.06 -52.49 -0.42 1.27 16 LS Contribution 303.94 15.07 4.58 4.58 Total: -1.00 -30.07 303.94 -5.73 -35.79 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: -0.60 Total: 5.82 kcal Atomic # 6 Polarization: -0.22 SS G_CDS: -1.88 Total: -2.10 kcal Atomic # 7 Polarization: -38.08 SS G_CDS: 0.34 Total: -37.74 kcal Atomic # 8 Polarization: -67.45 SS G_CDS: -2.68 Total: -70.13 kcal Atomic # 9 Polarization: -5.05 SS G_CDS: 0.11 Total: -4.94 kcal Atomic # 14 Polarization: 18.16 SS G_CDS: -5.04 Total: 13.12 kcal Atomic # 16 Polarization: 56.16 SS G_CDS: -0.56 Total: 55.59 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.07 -5.73 -35.79 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739085040.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -203.977 kcal (2) G-P(sol) polarization free energy of solvation -30.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -234.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -239.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.63 seconds