Wall clock time and date at job start Tue Mar 31 2020 22:42:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31291 * 1 3 3 Si 1.86804 * 119.99717 * 2 1 4 4 H 1.48496 * 109.47255 * 269.99476 * 3 2 1 5 5 H 1.48497 * 109.47089 * 30.00021 * 3 2 1 6 6 H 1.48510 * 109.46865 * 149.99661 * 3 2 1 7 7 C 1.38984 * 120.00266 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00056 * 180.02562 * 7 2 1 9 9 N 1.37323 * 119.99725 * 0.02562 * 7 2 1 10 10 C 1.36495 * 126.06816 * 179.97438 * 9 7 2 11 11 C 1.35678 * 107.51092 * 180.02562 * 10 9 7 12 12 N 1.40588 * 126.08563 * 179.97438 * 11 10 9 13 13 C 1.34773 * 120.00370 * 180.02562 * 12 11 10 14 14 O 1.21306 * 120.00047 * 359.97438 * 13 12 11 15 15 C 1.50702 * 120.00322 * 180.02562 * 13 12 11 16 16 N 1.46499 * 109.47280 * 179.97438 * 15 13 12 17 17 C 1.35006 * 126.03716 * 124.99583 * 16 15 13 18 18 C 1.35371 * 107.73469 * 179.97438 * 17 16 15 19 19 Br 1.89099 * 126.04458 * 179.97438 * 18 17 16 20 20 C 1.39905 * 107.90599 * 359.97438 * 18 17 16 21 21 N 1.30845 * 108.21362 * 359.75993 * 20 18 17 22 22 C 1.40653 * 107.83340 * 359.97438 * 11 10 9 23 23 N 1.30910 * 108.38789 * 0.02562 * 22 11 10 24 24 H 0.97003 * 119.99973 * 0.02562 * 1 2 3 25 25 H 1.07999 * 126.24260 * 359.75876 * 10 9 7 26 26 H 0.97001 * 119.99793 * 359.97438 * 12 11 10 27 27 H 1.09000 * 109.46804 * 299.99604 * 15 13 12 28 28 H 1.09003 * 109.47026 * 59.99515 * 15 13 12 29 29 H 1.08006 * 126.13615 * 359.94328 * 17 16 15 30 30 H 1.07999 * 125.89478 * 179.97438 * 20 18 17 31 31 H 1.07996 * 125.80538 * 180.02562 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2469 1.6178 0.0000 4 1 2.4945 2.0465 -1.4000 5 1 1.4443 2.6527 0.7000 6 1 3.5445 1.4403 0.7002 7 6 2.0079 -1.2036 0.0005 8 1 3.0879 -1.2036 0.0010 9 7 1.3213 -2.3929 0.0005 10 6 1.8750 -3.6405 0.0005 11 6 0.8579 -4.5385 0.0000 12 7 0.9891 -5.9382 -0.0007 13 6 -0.1100 -6.7182 -0.0018 14 8 -1.2126 -6.2125 -0.0017 15 6 0.0308 -8.2186 -0.0020 16 7 -1.2988 -8.8338 -0.0026 17 6 -1.7564 -9.7354 -0.8972 18 6 -3.0251 -10.0544 -0.5491 19 35 -4.1540 -11.2728 -1.4529 20 6 -3.3534 -9.3230 0.5975 21 7 -2.3176 -8.5954 0.9289 22 6 -0.3512 -3.8199 0.0002 23 7 -0.0715 -2.5410 0.0003 24 1 -0.4850 0.8401 -0.0004 25 1 2.9301 -3.8707 -0.0031 26 1 1.8708 -6.3426 -0.0012 27 1 0.5769 -8.5321 -0.8916 28 1 0.5756 -8.5325 0.8884 29 1 -1.2086 -10.1310 -1.7398 30 1 -4.2974 -9.3561 1.1209 31 1 -1.3418 -4.2500 0.0003 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000747430252.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:50 Heat of formation + Delta-G solvation = 143.072075 kcal Electronic energy + Delta-G solvation = -19955.116757 eV Core-core repulsion = 16515.485989 eV Total energy + Delta-G solvation = -3439.630769 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 339.007 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.41840 -39.92582 -38.58748 -34.33957 -33.63150 -33.16694 -31.70737 -30.32834 -29.55678 -28.20496 -26.82452 -24.78963 -22.04688 -21.08273 -21.02956 -20.21423 -19.49017 -17.68694 -17.37089 -16.72644 -15.64664 -15.46734 -15.19716 -14.68454 -14.45213 -13.94521 -13.74137 -13.36141 -13.33440 -13.17877 -12.91389 -12.42127 -11.71606 -11.49081 -11.28961 -11.14297 -11.06085 -10.98875 -10.56108 -10.25266 -10.20296 -9.85431 -9.23272 -9.21561 -8.85262 -8.54696 -8.10589 -6.77521 -6.59015 -4.27058 1.43961 1.62924 2.40305 2.51510 2.66640 2.97694 3.02500 3.08123 3.39744 3.61451 3.82404 4.30128 4.43298 4.49058 4.61898 4.80197 4.89231 4.98914 5.03438 5.32851 5.44999 6.18149 6.25703 6.37162 6.58249 6.82050 6.89976 7.03814 7.18637 7.45684 7.81435 8.05353 8.21423 8.54740 8.73674 9.33318 9.62413 10.36864 Molecular weight = 339.01amu Principal moments of inertia in cm(-1) A = 0.041003 B = 0.002035 C = 0.001982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.713450 B =13758.127441 C =14122.119022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.046 3.954 3 Si 0.935 3.065 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.264 1.264 7 C -0.323 4.323 8 H 0.117 0.883 9 N -0.141 5.141 10 C -0.083 4.083 11 C -0.062 4.062 12 N -0.620 5.620 13 C 0.482 3.518 14 O -0.505 6.505 15 C 0.118 3.882 16 N -0.348 5.348 17 C 0.094 3.906 18 C -0.241 4.241 19 Br -0.028 7.028 20 C 0.069 3.931 21 N -0.246 5.246 22 C -0.031 4.031 23 N -0.260 5.260 24 H 0.275 0.725 25 H 0.146 0.854 26 H 0.397 0.603 27 H 0.125 0.875 28 H 0.116 0.884 29 H 0.183 0.817 30 H 0.190 0.810 31 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.617 -22.128 -2.609 22.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.172 4.172 3 Si 0.759 3.241 4 H -0.196 1.196 5 H -0.200 1.200 6 H -0.188 1.188 7 C -0.456 4.456 8 H 0.134 0.866 9 N 0.091 4.909 10 C -0.234 4.234 11 C -0.167 4.167 12 N -0.264 5.264 13 C 0.265 3.735 14 O -0.379 6.379 15 C -0.008 4.008 16 N -0.129 5.129 17 C -0.055 4.055 18 C -0.333 4.333 19 Br 0.055 6.945 20 C -0.120 4.120 21 N -0.066 5.066 22 C -0.206 4.206 23 N -0.091 5.091 24 H 0.086 0.914 25 H 0.164 0.836 26 H 0.230 0.770 27 H 0.143 0.857 28 H 0.134 0.866 29 H 0.200 0.800 30 H 0.206 0.794 31 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -1.889 -19.914 -2.086 20.111 hybrid contribution 1.263 -0.689 -0.463 1.511 sum -0.626 -20.603 -2.549 20.769 Atomic orbital electron populations 1.70216 1.06156 1.28077 1.35051 1.25657 0.95715 1.00328 0.95464 0.85820 0.79384 0.79912 0.78987 1.19564 1.20049 1.18787 1.19880 0.91664 0.80525 1.53490 0.86566 1.44569 1.04067 1.03330 1.38895 1.21241 0.96794 0.85364 1.20042 1.17205 0.94337 0.80875 1.24308 1.42344 1.07779 1.04715 1.71550 1.20118 0.85357 0.87861 0.80182 1.90705 1.25454 1.73833 1.47943 1.21547 0.80323 0.92696 1.06230 1.48042 1.12017 1.31867 1.20933 1.22361 0.94611 0.93024 0.95553 1.21704 0.96592 1.10422 1.04556 1.96587 1.64032 1.57496 1.76427 1.23889 0.98820 0.94038 0.95215 1.77703 0.95898 1.20397 1.12598 1.24102 0.97996 0.90776 1.07754 1.78279 0.90087 1.15039 1.25721 0.91390 0.83644 0.76951 0.85696 0.86586 0.80031 0.79355 0.80856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.50 11.81 55.49 0.66 -20.84 16 2 C 0.05 1.18 5.50 -17.51 -0.10 1.08 16 3 Si 0.94 18.78 29.55 -169.99 -5.02 13.76 16 4 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 5 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 6 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 7 C -0.32 -8.47 10.25 -14.81 -0.15 -8.62 16 8 H 0.12 2.70 7.83 -52.48 -0.41 2.29 16 9 N -0.14 -3.84 3.74 -11.41 -0.04 -3.88 16 10 C -0.08 -1.91 11.49 -16.39 -0.19 -2.10 16 11 C -0.06 -1.38 6.90 -83.84 -0.58 -1.96 16 12 N -0.62 -10.00 5.47 -10.00 -0.05 -10.06 16 13 C 0.48 7.75 7.83 -10.99 -0.09 7.66 16 14 O -0.51 -10.80 12.87 5.54 0.07 -10.73 16 15 C 0.12 1.18 6.99 -5.19 -0.04 1.15 16 16 N -0.35 -4.38 3.40 -62.51 -0.21 -4.60 16 17 C 0.09 0.98 11.41 -17.18 -0.20 0.79 16 18 C -0.24 -2.76 6.53 -39.98 -0.26 -3.02 16 19 Br -0.03 -0.27 34.08 -68.01 -2.32 -2.59 16 20 C 0.07 0.89 12.01 -17.35 -0.21 0.68 16 21 N -0.25 -3.79 11.66 30.63 0.36 -3.43 16 22 C -0.03 -0.81 10.85 -17.03 -0.18 -1.00 16 23 N -0.26 -7.58 10.40 30.80 0.32 -7.26 16 24 H 0.28 7.05 8.31 -40.82 -0.34 6.71 16 25 H 0.15 2.72 8.06 -52.49 -0.42 2.30 16 26 H 0.40 4.46 8.83 -40.82 -0.36 4.10 16 27 H 0.13 0.70 8.07 -51.93 -0.42 0.28 16 28 H 0.12 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.18 1.20 8.06 -52.48 -0.42 0.78 16 30 H 0.19 1.92 8.06 -52.49 -0.42 1.50 16 31 H 0.17 4.62 5.92 -52.49 -0.31 4.31 16 LS Contribution 305.32 15.07 4.60 4.60 Total: -1.00 -36.39 305.32 -5.96 -42.35 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -2.33 Total: 8.02 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: -1.99 Total: -5.34 kcal Atomic # 7 Polarization: -51.10 SS G_CDS: 1.02 Total: -50.07 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: 0.07 Total: -10.73 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -5.02 Total: 13.76 kcal Atomic # 35 Polarization: -0.27 SS G_CDS: -2.32 Total: -2.59 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -36.39 -5.96 -42.35 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747430252.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.422 kcal (2) G-P(sol) polarization free energy of solvation -36.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 149.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 143.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds