Wall clock time and date at job start Tue Mar 31 2020 22:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31291 * 1 3 3 Si 1.86804 * 119.99717 * 2 1 4 4 H 1.48496 * 109.47255 * 269.99476 * 3 2 1 5 5 H 1.48497 * 109.47089 * 30.00021 * 3 2 1 6 6 H 1.48510 * 109.46865 * 149.99661 * 3 2 1 7 7 C 1.38984 * 120.00266 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00056 * 180.02562 * 7 2 1 9 9 N 1.37323 * 119.99725 * 0.02562 * 7 2 1 10 10 C 1.36495 * 126.06816 * 179.97438 * 9 7 2 11 11 C 1.35678 * 107.51092 * 180.02562 * 10 9 7 12 12 N 1.40588 * 126.08563 * 179.97438 * 11 10 9 13 13 C 1.34773 * 120.00370 * 180.02562 * 12 11 10 14 14 O 1.21306 * 120.00047 * 359.97438 * 13 12 11 15 15 C 1.50702 * 120.00322 * 180.02562 * 13 12 11 16 16 N 1.46499 * 109.47280 * 179.97438 * 15 13 12 17 17 C 1.35006 * 126.03716 * 124.99583 * 16 15 13 18 18 C 1.35371 * 107.73469 * 179.97438 * 17 16 15 19 19 Br 1.89099 * 126.04458 * 179.97438 * 18 17 16 20 20 C 1.39905 * 107.90599 * 359.97438 * 18 17 16 21 21 N 1.30845 * 108.21362 * 359.75993 * 20 18 17 22 22 C 1.40653 * 107.83340 * 359.97438 * 11 10 9 23 23 N 1.30910 * 108.38789 * 0.02562 * 22 11 10 24 24 H 0.97003 * 119.99973 * 0.02562 * 1 2 3 25 25 H 1.07999 * 126.24260 * 359.75876 * 10 9 7 26 26 H 0.97001 * 119.99793 * 359.97438 * 12 11 10 27 27 H 1.09000 * 109.46804 * 299.99604 * 15 13 12 28 28 H 1.09003 * 109.47026 * 59.99515 * 15 13 12 29 29 H 1.08006 * 126.13615 * 359.94328 * 17 16 15 30 30 H 1.07999 * 125.89478 * 179.97438 * 20 18 17 31 31 H 1.07996 * 125.80538 * 180.02562 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2469 1.6178 0.0000 4 1 2.4945 2.0465 -1.4000 5 1 1.4443 2.6527 0.7000 6 1 3.5445 1.4403 0.7002 7 6 2.0079 -1.2036 0.0005 8 1 3.0879 -1.2036 0.0010 9 7 1.3213 -2.3929 0.0005 10 6 1.8750 -3.6405 0.0005 11 6 0.8579 -4.5385 0.0000 12 7 0.9891 -5.9382 -0.0007 13 6 -0.1100 -6.7182 -0.0018 14 8 -1.2126 -6.2125 -0.0017 15 6 0.0308 -8.2186 -0.0020 16 7 -1.2988 -8.8338 -0.0026 17 6 -1.7564 -9.7354 -0.8972 18 6 -3.0251 -10.0544 -0.5491 19 35 -4.1540 -11.2728 -1.4529 20 6 -3.3534 -9.3230 0.5975 21 7 -2.3176 -8.5954 0.9289 22 6 -0.3512 -3.8199 0.0002 23 7 -0.0715 -2.5410 0.0003 24 1 -0.4850 0.8401 -0.0004 25 1 2.9301 -3.8707 -0.0031 26 1 1.8708 -6.3426 -0.0012 27 1 0.5769 -8.5321 -0.8916 28 1 0.5756 -8.5325 0.8884 29 1 -1.2086 -10.1310 -1.7398 30 1 -4.2974 -9.3561 1.1209 31 1 -1.3418 -4.2500 0.0003 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000747430252.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:49 Heat of formation + Delta-G solvation = 115.954840 kcal Electronic energy + Delta-G solvation = -19956.292649 eV Core-core repulsion = 16515.485989 eV Total energy + Delta-G solvation = -3440.806660 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 339.007 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.33048 -41.64499 -40.10285 -35.96095 -35.01644 -34.48668 -32.56173 -32.25579 -30.58725 -29.66532 -28.05083 -26.59283 -23.27311 -22.75605 -21.92821 -21.54427 -21.18002 -19.37192 -18.39308 -17.94778 -17.41244 -16.82025 -16.58681 -15.91596 -15.70169 -15.35337 -15.13970 -14.82176 -14.60135 -14.40422 -14.09263 -13.49476 -13.33173 -13.31055 -12.90855 -12.85704 -12.09587 -11.99734 -11.91567 -11.83227 -11.06375 -11.02483 -10.97509 -10.81310 -10.40949 -10.11615 -9.40770 -8.53887 -8.47649 -6.25382 0.61082 0.80023 1.20380 1.39262 1.49632 1.56450 1.57895 1.61477 1.85284 2.06056 2.28192 2.50053 2.88569 3.08730 3.62340 3.74515 3.89329 4.08726 4.18651 4.43340 4.51990 4.59981 4.62415 4.99334 5.05681 5.28924 5.36457 5.44714 5.81911 5.95564 6.30698 6.55440 6.72889 6.73328 7.38007 7.47129 7.67818 8.51772 Molecular weight = 339.01amu Principal moments of inertia in cm(-1) A = 0.041003 B = 0.002035 C = 0.001982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.713450 B =13758.127441 C =14122.119022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C -0.009 4.009 3 Si 1.020 2.980 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.242 1.242 7 C -0.353 4.353 8 H 0.143 0.857 9 N -0.169 5.169 10 C -0.078 4.078 11 C -0.042 4.042 12 N -0.609 5.609 13 C 0.478 3.522 14 O -0.562 6.562 15 C 0.126 3.874 16 N -0.358 5.358 17 C 0.107 3.893 18 C -0.259 4.259 19 Br -0.015 7.015 20 C 0.062 3.938 21 N -0.304 5.304 22 C -0.062 4.062 23 N -0.314 5.314 24 H 0.275 0.725 25 H 0.193 0.807 26 H 0.425 0.575 27 H 0.183 0.817 28 H 0.150 0.850 29 H 0.225 0.775 30 H 0.200 0.800 31 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.409 -24.067 -3.375 24.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.220 4.220 3 Si 0.838 3.162 4 H -0.188 1.188 5 H -0.204 1.204 6 H -0.165 1.165 7 C -0.484 4.484 8 H 0.161 0.839 9 N 0.062 4.938 10 C -0.228 4.228 11 C -0.148 4.148 12 N -0.256 5.256 13 C 0.264 3.736 14 O -0.440 6.440 15 C 0.002 3.998 16 N -0.139 5.139 17 C -0.042 4.042 18 C -0.350 4.350 19 Br 0.067 6.933 20 C -0.127 4.127 21 N -0.124 5.124 22 C -0.237 4.237 23 N -0.146 5.146 24 H 0.085 0.915 25 H 0.210 0.790 26 H 0.264 0.736 27 H 0.200 0.800 28 H 0.167 0.833 29 H 0.242 0.758 30 H 0.216 0.784 31 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 1.188 -21.926 -2.848 22.142 hybrid contribution 0.273 -0.315 -0.249 0.486 sum 1.461 -22.241 -3.097 22.503 Atomic orbital electron populations 1.70411 1.08527 1.29050 1.37544 1.26912 0.96448 1.04487 0.94171 0.84587 0.78320 0.74012 0.79247 1.18850 1.20433 1.16518 1.20635 0.92997 0.80844 1.53937 0.83922 1.44860 1.03537 1.04983 1.40453 1.22055 0.98948 0.84025 1.17768 1.17266 0.92430 0.83923 1.21170 1.42275 1.09771 1.02089 1.71513 1.21329 0.84111 0.90520 0.77603 1.90702 1.27805 1.75573 1.49898 1.21865 0.80094 0.87231 1.10600 1.48252 1.12354 1.32403 1.20881 1.23050 0.94311 0.91501 0.95387 1.21923 0.97528 1.11003 1.04569 1.96591 1.63882 1.56861 1.75925 1.24210 0.98911 0.93679 0.95861 1.77618 0.97534 1.22295 1.14922 1.24089 0.98995 0.91098 1.09557 1.78165 0.92240 1.16653 1.27529 0.91492 0.79027 0.73624 0.79995 0.83291 0.75835 0.78352 0.82360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -48.36 11.81 21.66 0.26 -48.10 16 2 C -0.01 -0.46 5.50 84.95 0.47 0.00 16 3 Si 1.02 38.51 29.55 68.60 2.03 40.54 16 4 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 5 H -0.28 -10.55 7.11 99.48 0.71 -9.84 16 6 H -0.24 -8.20 7.11 99.48 0.71 -7.50 16 7 C -0.35 -18.53 10.25 84.01 0.86 -17.67 16 8 H 0.14 6.40 7.83 -2.91 -0.02 6.38 16 9 N -0.17 -9.32 3.74 -190.01 -0.71 -10.03 16 10 C -0.08 -3.45 11.49 83.37 0.96 -2.49 16 11 C -0.04 -1.83 6.90 37.73 0.26 -1.57 16 12 N -0.61 -18.12 5.47 -303.93 -1.66 -19.78 16 13 C 0.48 14.51 7.83 87.66 0.69 15.19 16 14 O -0.56 -24.41 12.87 -3.11 -0.04 -24.45 16 15 C 0.13 2.02 6.99 85.63 0.60 2.61 16 16 N -0.36 -8.14 3.40 -351.69 -1.19 -9.33 16 17 C 0.11 1.91 11.41 83.54 0.95 2.86 16 18 C -0.26 -5.52 6.53 22.01 0.14 -5.38 16 19 Br -0.02 -0.27 34.08 -20.37 -0.69 -0.97 16 20 C 0.06 1.58 12.01 85.24 1.02 2.60 16 21 N -0.30 -9.25 11.66 -57.00 -0.66 -9.91 16 22 C -0.06 -3.42 10.85 85.42 0.93 -2.49 16 23 N -0.31 -19.13 10.40 -56.46 -0.59 -19.72 16 24 H 0.28 14.84 8.31 -92.71 -0.77 14.07 16 25 H 0.19 6.44 8.06 -2.91 -0.02 6.42 16 26 H 0.43 7.68 8.83 -92.71 -0.82 6.87 16 27 H 0.18 0.85 8.07 -2.39 -0.02 0.83 16 28 H 0.15 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.23 1.83 8.06 -2.91 -0.02 1.80 16 30 H 0.20 4.17 8.06 -2.91 -0.02 4.15 16 31 H 0.16 9.05 5.92 -2.91 -0.02 9.03 16 Total: -1.00 -87.28 305.32 3.99 -83.28 By element: Atomic # 1 Polarization: 24.43 SS G_CDS: 0.38 Total: 24.81 kcal Atomic # 6 Polarization: -13.22 SS G_CDS: 6.88 Total: -6.34 kcal Atomic # 7 Polarization: -112.32 SS G_CDS: -4.56 Total: -116.88 kcal Atomic # 8 Polarization: -24.41 SS G_CDS: -0.04 Total: -24.45 kcal Atomic # 14 Polarization: 38.51 SS G_CDS: 2.03 Total: 40.54 kcal Atomic # 35 Polarization: -0.27 SS G_CDS: -0.69 Total: -0.97 kcal Total: -87.28 3.99 -83.28 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747430252.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 199.236 kcal (2) G-P(sol) polarization free energy of solvation -87.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds